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Started by upstream project "BIOFORMATS-test-repo" build number 131 originally caused by: Started by upstream project "Trigger" build number 148 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins6582078557269428781.sh + '[' micromanager = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_20561_merge_ci -v /uod/idr/repos/curated/micromanager:/data -v /uod/idr-scratch/merge-ci/curated/micromanager:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:01:11,364 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:01:11,366 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 02:01:11,366 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:01:11,367 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:01:11,368 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:01:11,368 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:01:11,368 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:01:11,368 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:01:11,370 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:01:11,371 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:01:11,371 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:01:11,371 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:01:11,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:01:11,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:01:11,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:01:11,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:01:11,646 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:01:11,646 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:01:11,646 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:01:11,647 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:01:11,647 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 02:01:11,647 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 02:01:11,648 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 278 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-24 02:01:11,656] [main] java.version = 17.0.2 [testng] 02:01:11,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:01:11,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:11,700 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-24_02-01-11.log] [testng] 02:01:11,701 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-07-24 02:01:11,704] [main] testng.directory = /data [testng] [2024-07-24 02:01:11,704] [main] testng.configDirectory = /config [testng] [2024-07-24 02:01:11,712] [main] testng.multiplier = 1.0 [testng] [2024-07-24 02:01:11,713] [main] testng.in-memory = false [testng] [2024-07-24 02:01:11,713] [main] testng.allow-missing = false [testng] [2024-07-24 02:01:11,713] [main] user.language = en [testng] [2024-07-24 02:01:11,713] [main] user.country = ${user.country} [testng] [2024-07-24 02:01:11,713] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-24 02:01:20,694] [main] ---------------------------------------- [testng] [2024-07-24 02:01:20,695] [main] Total files: 1686 [testng] [2024-07-24 02:01:20,695] [main] Scan time: 8.981 s (5 ms/file) [testng] [2024-07-24 02:01:20,695] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 49 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-24 02:07:46,263] [pool-1-thread-1] Initializing /data/david/img_000000000_white_000.tif: [testng] 02:07:46,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:07:46,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:46,266 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-24_02-07-46.log] [testng] 02:07:46,266 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c98e195 - End of configuration. [testng] [2024-07-24 02:07:49,061] [pool-1-thread-12] Initializing /data/qa-17040/hyper2.0_1_MMStack_1-Pos_000_000_metadata.txt: [testng] 02:07:49,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:07:49,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:49,062 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-24_02-07-49.log] [testng] 02:07:49,062 |-INFO in ch.qos.logback.core.sift.SiftProcessor@443ff176 - End of configuration. [testng] [2024-07-24 02:07:49,104] [pool-1-thread-11] Initializing /data/public/1.4.16/serge/Pos5/img_000000000_00-BF0_000.tif: [testng] 02:07:49,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:07:49,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:49,105 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-24_02-07-49.log] [testng] 02:07:49,105 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62f22739 - End of configuration. [testng] [2024-07-24 02:07:49,272] [pool-1-thread-10] Initializing /data/scott/EMoffchanfurst2Time_0/img_000000000_491_000.tif: [testng] 02:07:49,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:07:49,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:49,273 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-24_02-07-49.log] [testng] 02:07:49,273 |-INFO in ch.qos.logback.core.sift.SiftProcessor@109d39db - End of configuration. [testng] [2024-07-24 02:07:49,314] [pool-1-thread-9] Initializing /data/scott/EMonchanfurst2Time_0/img_000000000_491_000.tif: [testng] 02:07:49,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:07:49,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:49,315 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-24_02-07-49.log] [testng] 02:07:49,315 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f6d3abd - End of configuration. [testng] [2024-07-24 02:07:49,396] [pool-1-thread-8] Initializing /data/eric/GFP-Aladin mCh-Tub_2/Acqusition.xml: [testng] 02:07:49,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:07:49,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:49,398 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-24_02-07-49.log] [testng] 02:07:49,398 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b93ed36 - End of configuration. [testng] [2024-07-24 02:07:49,450] [pool-1-thread-7] Initializing /data/david/trial 2 part 3 40x_0/Acqusition.xml: [testng] 02:07:49,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:07:49,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:49,451 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-24_02-07-49.log] [testng] 02:07:49,451 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3aed48d9 - End of configuration. [testng] [2024-07-24 02:07:49,479] [pool-1-thread-6] Initializing /data/public/1.4.16/serge/Pos3/img_000000000_00-BF0_000.tif: [testng] 02:07:49,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:07:49,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:49,480 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-24_02-07-49.log] [testng] 02:07:49,480 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46334f3f - End of configuration. [testng] [2024-07-24 02:07:49,642] [pool-1-thread-5] Initializing /data/pr-3253/img_000000000__000.tif: [testng] 02:07:49,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:07:49,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:49,643 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-24_02-07-49.log] [testng] 02:07:49,643 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21d86700 - End of configuration. [testng] [2024-07-24 02:07:49,685] [pool-1-thread-4] Initializing /data/nico/test-ASI-Z_181/img_000000004_FITC_009.tif: [testng] 02:07:49,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:07:49,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:49,686 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-24_02-07-49.log] [testng] 02:07:49,686 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16d8915a - End of configuration. [testng] [2024-07-24 02:07:49,794] [pool-1-thread-4] Used files list does not include base file [testng] [2024-07-24 02:07:49,797] [pool-1-thread-3] Initializing /data/david/res test/res test.tif: [testng] 02:07:49,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:07:49,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:49,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-24_02-07-49.log] [testng] 02:07:49,798 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ec50b26 - End of configuration. [testng] [2024-07-24 02:07:49,850] [pool-1-thread-2] Initializing /data/scott/EMoffslicefurst2Time_0/img_000000000_491_000.tif: [testng] 02:07:49,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:07:49,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:49,851 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-24_02-07-49.log] [testng] 02:07:49,851 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d2fb6a3 - End of configuration. [testng] [2024-07-24 02:07:50,702] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:50,925] [pool-1-thread-7] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:51,441] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:51,478] [pool-1-thread-2] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:51,491] [pool-1-thread-10] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:51,724] [pool-1-thread-12] Initializing /data/nico/test2/img_000000000_Cy5_000.tif: [testng] [2024-07-24 02:07:51,779] [pool-1-thread-7] Initializing /data/qa-17040/hyper2.0_1_MMStack_1-Pos_001_000_metadata.txt: [testng] [2024-07-24 02:07:51,854] [pool-1-thread-3] Initializing /data/public/1.4.16/serge/Pos4/img_000000000_00-BF0_000.tif: [testng] [2024-07-24 02:07:52,164] [pool-1-thread-8] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:07:52,214] [pool-1-thread-5] Initializing /data/nico/test-ASI-Z_181/img_000000004_Cy3_009.tif: [testng] [2024-07-24 02:07:52,334] [pool-1-thread-5] Used files list does not include base file [testng] [2024-07-24 02:07:52,614] [pool-1-thread-9] Initializing /data/qa-17040/hyper2.0_1_MMStack_1-Pos_001_001_metadata.txt: [testng] [2024-07-24 02:07:52,700] [pool-1-thread-10] Initializing /data/nico/test-ASI-Z_181/img_000000004_FITC_008.tif: [testng] [2024-07-24 02:07:52,796] [pool-1-thread-10] Used files list does not include base file [testng] [2024-07-24 02:07:52,798] [pool-1-thread-2] Initializing /data/public/1.4.22/sebastien/Test_Dataset_MultiPosition_Stack_1_MMStack_Pos0_metadata.txt: [testng] [2024-07-24 02:08:13,490] [pool-1-thread-1] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:13,541] [pool-1-thread-8] Initializing /data/public/1.4.22/thomas/test/test2_sep/Pos0/metadata.txt: [testng] [2024-07-24 02:08:13,681] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:13,933] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:13,960] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:13,967] [pool-1-thread-7] Initializing /data/eric/GFP-Aladin mCh-Tub_5/Acqusition.xml: [testng] [2024-07-24 02:08:14,515] [pool-1-thread-6] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:14,515] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:14,536] [pool-1-thread-12] Initializing /data/eric/GFP-Aladin mCh-Tub_0/Acqusition.xml: [testng] [2024-07-24 02:08:15,062] [pool-1-thread-8] Initializing /data/nico/test-ASI-Z_181/img_000000004_Cy3_007.tif: [testng] [2024-07-24 02:08:15,178] [pool-1-thread-8] Used files list does not include base file [testng] [2024-07-24 02:08:15,192] [pool-1-thread-9] Initializing /data/eric/GFP-Aladin mCh-Tub_1/Acqusition.xml: [testng] [2024-07-24 02:08:15,434] [pool-1-thread-5] Initializing /data/nico/test-ASI-Z_181/img_000000004_FITC_007.tif: [testng] [2024-07-24 02:08:15,568] [pool-1-thread-5] Used files list does not include base file [testng] [2024-07-24 02:08:15,570] [pool-1-thread-4] Initializing /data/colin/20121205_H_rel_3c_0nm_1/img_000000000_Cy5_000.tif: [testng] [2024-07-24 02:08:16,631] [pool-1-thread-11] Initializing /data/nico/MM_test_0/img_0_Cy5_0.tif: [testng] [2024-07-24 02:08:16,686] [pool-1-thread-6] Initializing /data/public/1.4.22/thomas/test/test_sep/Pos0/img_000000000_FITC_000.tif: [testng] [2024-07-24 02:08:16,812] [pool-1-thread-3] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:16,883] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:17,339] [pool-1-thread-9] Initializing /data/public/1.4.16/serge/Pos0/img_000000000_00-BF0_000.tif: [testng] [2024-07-24 02:08:17,741] [pool-1-thread-6] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:17,896] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:17,955] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:17,994] [pool-1-thread-6] Initializing /data/stanislav/s105-GFP-_0/img_000000000_GFP_000.tif: [testng] [2024-07-24 02:08:18,270] [pool-1-thread-11] Initializing /data/eik/1-Pos_000_000/img_000000000_Blue_002.tif: [testng] [2024-07-24 02:08:18,742] [pool-1-thread-12] Initializing /data/nico/Untitled_4_multi_file/img_000000000_gfpFast_000.tif: [testng] [2024-07-24 02:08:19,455] [pool-1-thread-10] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:08:19,535] [pool-1-thread-3] Initializing /data/pr-3229/1.4-large-acq-take-2_1_MMStack_Pos0_metadata.txt: [testng] [2024-07-24 02:11:15,455] [pool-1-thread-6] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:11:15,516] [pool-1-thread-8] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:11:15,523] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:11:15,538] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:11:15,610] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:11:15,692] [pool-1-thread-10] Initializing /data/public/1.4.23/jens/fucci_GFP-geminin_RFP-cdt1_2_MMStack_Pos0_metadata.txt: [testng] [2024-07-24 02:11:16,179] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:11:16,179] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:11:16,253] [pool-1-thread-6] Initializing /data/public/1.4.16/serge/Pos1/img_000000000_00-BF0_000.tif: [testng] [2024-07-24 02:11:16,542] [pool-1-thread-8] Initializing /data/public/1.4.16/serge/Pos2/img_000000000_00-BF0_000.tif: [testng] [2024-07-24 02:11:16,700] [pool-1-thread-7] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:11:16,713] [pool-1-thread-5] Initializing /data/nico/test-ASI-Z_181/img_000000004_Cy3_006.tif: [testng] [2024-07-24 02:11:16,812] [pool-1-thread-5] Used files list does not include base file [testng] [2024-07-24 02:11:16,909] [pool-1-thread-11] Initializing /data/nico/S2-GFP-Histone-Cherry-tub_9_Great2/metadata.txt: [testng] [2024-07-24 02:11:17,810] [pool-1-thread-12] Initializing /data/nico/test_1/Acqusition.xml: [testng] [2024-07-24 02:11:18,675] [pool-1-thread-9] Initializing /data/nico/test-ASI-Z_181/img_000000004_Cy3_008.tif: [testng] [2024-07-24 02:11:18,803] [pool-1-thread-9] Used files list does not include base file [testng] [2024-07-24 02:11:18,934] [pool-1-thread-4] Initializing /data/qa-4984/img_000000000__000.tif: [testng] [2024-07-24 02:11:19,112] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:11:19,439] [pool-1-thread-12] Initializing /data/eric/GFP-Aladin mCh-Tub_3/Acqusition.xml: [testng] [2024-07-24 02:11:19,660] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:11:19,990] [pool-1-thread-7] Initializing /data/kally/img_000000000_Brightfield_000.tif: [testng] [2024-07-24 02:11:21,807] [pool-1-thread-1] Initializing /data/public/1.4.22/thomas/test/test2_stack/MMStack_Pos0_metadata.txt: [testng] [2024-07-24 02:11:21,994] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:11:21,998] [pool-1-thread-4] Initializing /data/eric/GFP-Aladin mCh-Tub_4/Acqusition.xml: [testng] [2024-07-24 02:11:22,647] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:11:22,880] [pool-1-thread-8] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:11:22,907] [pool-1-thread-6] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:11:22,932] [pool-1-thread-1] Initializing /data/public/1.4.22/thomas/test/test_stack/test_stack_MMStack_Pos0_metadata.txt: [testng] [2024-07-24 02:11:23,146] [pool-1-thread-12] Initializing /data/nico/test-ASI-Z_181/img_000000004_FITC_006.tif: [testng] [2024-07-24 02:11:23,251] [pool-1-thread-12] Used files list does not include base file [testng] [2024-07-24 02:11:23,272] [pool-1-thread-5] Initializing /data/qa-17040/hyper2.0_1_MMStack_1-Pos_000_001_metadata.txt: [testng] [2024-07-24 02:11:23,500] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:11:23,689] [pool-1-thread-1] Initializing /data/scott/EMonslicefurst2Time_0/img_000000000_491_000.tif: [testng] [2024-07-24 02:11:24,851] [pool-1-thread-1] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:11:26,485] [pool-1-thread-7] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:11:26,813] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-24 02:11:34,434] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2597, Failures: 37, Skips: 0 [testng] =============================================== [testng] [testng] The tests failed. BUILD FAILED /bio-formats-build/bioformats/components/test-suite/build.xml:270: if=failedTest Total time: 34 minutes 19 seconds Build step 'Execute shell' marked build as failure Finished: FAILURE