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Started by upstream project "BIOFORMATS-test-repo" build number 132 originally caused by: Started by upstream project "Trigger" build number 152 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins17214316397816156054.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_20653_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 10:58:58,195 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 10:58:58,196 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 10:58:58,196 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 10:58:58,197 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 10:58:58,197 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 10:58:58,198 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 10:58:58,198 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 10:58:58,198 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 10:58:58,199 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 10:58:58,199 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 10:58:58,200 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 10:58:58,200 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 10:58:58,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 10:58:58,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 10:58:58,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 10:58:58,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 10:58:58,407 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 10:58:58,407 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 10:58:58,407 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 10:58:58,408 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 10:58:58,408 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 10:58:58,409 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 10:58:58,409 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 210 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-25 10:58:58,419] [main] java.version = 21 [testng] 10:58:58,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 10:58:58,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:58:58,467 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-25_10-58-58.log] [testng] 10:58:58,469 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-07-25 10:58:58,471] [main] testng.directory = /data [testng] [2024-07-25 10:58:58,471] [main] testng.configDirectory = /config [testng] [2024-07-25 10:58:58,481] [main] testng.multiplier = 1.0 [testng] [2024-07-25 10:58:58,482] [main] testng.in-memory = false [testng] [2024-07-25 10:58:58,482] [main] testng.allow-missing = false [testng] [2024-07-25 10:58:58,482] [main] user.language = en [testng] [2024-07-25 10:58:58,482] [main] user.country = ${user.country} [testng] [2024-07-25 10:58:58,482] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-25 10:58:59,578] [main] ---------------------------------------- [testng] [2024-07-25 10:58:59,578] [main] Total files: 21 [testng] [2024-07-25 10:58:59,578] [main] Scan time: 1.096 s (52 ms/file) [testng] [2024-07-25 10:58:59,579] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-25 10:59:01,899] [pool-1-thread-1] Initializing /data/stefan/001_q15.txt: [testng] 10:59:01,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 10:59:01,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:59:01,901 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-25_10-59-01.log] [testng] 10:59:01,902 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6666a7dc - End of configuration. [testng] [2024-07-25 10:59:01,967] [pool-1-thread-12] Initializing /data/stefan/001_q12.txt: [testng] 10:59:01,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 10:59:01,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:59:01,968 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-25_10-59-01.log] [testng] 10:59:01,969 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7536054e - End of configuration. [testng] [2024-07-25 10:59:02,062] [pool-1-thread-11] Initializing /data/stefan/001_q13.txt: [testng] 10:59:02,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 10:59:02,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:59:02,064 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-25_10-59-02.log] [testng] 10:59:02,065 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cdf5884 - End of configuration. [testng] [2024-07-25 10:59:02,127] [pool-1-thread-10] Initializing /data/stefan/001_q08.txt: [testng] 10:59:02,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 10:59:02,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:59:02,129 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-25_10-59-02.log] [testng] 10:59:02,130 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5efa9810 - End of configuration. [testng] [2024-07-25 10:59:02,231] [pool-1-thread-9] Initializing /data/stefan/001_q06.txt: [testng] 10:59:02,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 10:59:02,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:59:02,233 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-25_10-59-02.log] [testng] 10:59:02,234 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ef8da72 - End of configuration. [testng] [2024-07-25 10:59:02,270] [pool-1-thread-8] Initializing /data/stefan/001_q04.txt: [testng] 10:59:02,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 10:59:02,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:59:02,272 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-25_10-59-02.log] [testng] 10:59:02,272 |-INFO in ch.qos.logback.core.sift.SiftProcessor@433165ce - End of configuration. [testng] [2024-07-25 10:59:02,304] [pool-1-thread-7] Initializing /data/stefan/001_q03.txt: [testng] 10:59:02,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 10:59:02,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:59:02,306 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-25_10-59-02.log] [testng] 10:59:02,306 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26bf0497 - End of configuration. [testng] [2024-07-25 10:59:02,342] [pool-1-thread-6] Initializing /data/stefan/001_q10.txt: [testng] 10:59:02,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 10:59:02,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:59:02,344 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-25_10-59-02.log] [testng] 10:59:02,345 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6facb0fd - End of configuration. [testng] [2024-07-25 10:59:02,427] [pool-1-thread-5] Initializing /data/stefan/001_q14.txt: [testng] 10:59:02,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 10:59:02,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:59:02,430 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-25_10-59-02.log] [testng] 10:59:02,431 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76c434db - End of configuration. [testng] [2024-07-25 10:59:02,483] [pool-1-thread-4] Initializing /data/stefan/001_q11.txt: [testng] 10:59:02,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 10:59:02,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:59:02,484 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-25_10-59-02.log] [testng] 10:59:02,485 |-INFO in ch.qos.logback.core.sift.SiftProcessor@595b920f - End of configuration. [testng] [2024-07-25 10:59:02,605] [pool-1-thread-3] Initializing /data/stefan/001_q18.txt: [testng] 10:59:02,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 10:59:02,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:59:02,606 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-25_10-59-02.log] [testng] 10:59:02,606 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c58ceb6 - End of configuration. [testng] [2024-07-25 10:59:02,703] [pool-1-thread-2] Initializing /data/stefan/001_q01.txt: [testng] 10:59:02,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 10:59:02,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:59:02,705 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-25_10-59-02.log] [testng] 10:59:02,705 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e93d58d - End of configuration. [testng] [2024-07-25 10:59:05,257] [pool-1-thread-5] Initializing /data/stefan/001_q05.txt: [testng] [2024-07-25 10:59:05,282] [pool-1-thread-8] Initializing /data/stefan/001_q17.txt: [testng] [2024-07-25 10:59:05,357] [pool-1-thread-7] Initializing /data/stefan/001_q02.txt: [testng] [2024-07-25 10:59:05,378] [pool-1-thread-1] Initializing /data/stefan/001_q07.txt: [testng] [2024-07-25 10:59:05,461] [pool-1-thread-11] Initializing /data/stefan/001_q09.txt: [testng] [2024-07-25 10:59:05,534] [pool-1-thread-10] Initializing /data/stefan/001_q16.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 13 seconds Finished: SUCCESS