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Started by upstream project "BIOFORMATS-test-repo" build number 17 originally caused by: Started by upstream project "Trigger" build number 20 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins5071276711357536876.sh + '[' psd = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_2073_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:20:50,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:20:50,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:20:50,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:20:50,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:20:50,864 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:20:50,865 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:20:50,865 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:20:50,866 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:20:50,866 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@41a0aa7d - End of configuration. [testng] 01:20:50,867 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6574a52c - Registering current configuration as safe fallback point [testng] 01:20:50,867 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c1a5b54 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 597 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-30 01:20:50,880] [main] java.version = 11.0.16 [testng] 01:20:50,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:20:50,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:51,083 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-30_01-20-51.log] [testng] 01:20:51,085 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-03-30 01:20:51,087] [main] testng.directory = /data [testng] [2024-03-30 01:20:51,088] [main] testng.configDirectory = /config [testng] [2024-03-30 01:20:51,119] [main] testng.multiplier = 1.0 [testng] [2024-03-30 01:20:51,121] [main] testng.in-memory = false [testng] [2024-03-30 01:20:51,121] [main] testng.allow-missing = false [testng] [2024-03-30 01:20:51,121] [main] user.language = en [testng] [2024-03-30 01:20:51,121] [main] user.country = ${user.country} [testng] [2024-03-30 01:20:51,121] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-03-30 01:20:51,840] [main] ---------------------------------------- [testng] [2024-03-30 01:20:51,840] [main] Total files: 18 [testng] [2024-03-30 01:20:51,840] [main] Scan time: 0.719 s (39 ms/file) [testng] [2024-03-30 01:20:51,841] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-30 01:20:53,805] [pool-1-thread-1] Initializing /data/qa-4117/caspase gel-1.psd: [testng] 01:20:53,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:20:53,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:53,810 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-30_01-20-53.log] [testng] 01:20:53,811 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74a1b162 - End of configuration. [testng] [2024-03-30 01:20:53,851] [pool-1-thread-12] Initializing /data/misc/glossy_buttons.psd: [testng] 01:20:53,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:20:53,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:53,861 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-30_01-20-53.log] [testng] 01:20:53,861 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6af7d626 - End of configuration. [testng] [2024-03-30 01:20:53,900] [pool-1-thread-11] Initializing /data/misc/smilie.psd: [testng] 01:20:53,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:20:53,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:53,902 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-30_01-20-53.log] [testng] 01:20:53,902 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d417f86 - End of configuration. [testng] [2024-03-30 01:20:53,920] [pool-1-thread-10] Initializing /data/ascb/423.psd: [testng] 01:20:53,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:20:53,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:53,922 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-30_01-20-53.log] [testng] 01:20:53,922 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b4fb4dd - End of configuration. [testng] [2024-03-30 01:20:53,989] [pool-1-thread-9] Initializing /data/ascb/thin&thick fill.2.psd: [testng] 01:20:53,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:20:53,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:53,990 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-30_01-20-53.log] [testng] 01:20:53,991 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7496284a - End of configuration. [testng] [2024-03-30 01:20:54,048] [pool-1-thread-8] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] 01:20:54,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:20:54,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:54,049 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-30_01-20-54.log] [testng] 01:20:54,049 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61d5776a - End of configuration. [testng] [2024-03-30 01:20:54,086] [pool-1-thread-7] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 01:20:54,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:20:54,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:54,087 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-30_01-20-54.log] [testng] 01:20:54,088 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42e283d8 - End of configuration. [testng] [2024-03-30 01:20:54,150] [pool-1-thread-6] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 01:20:54,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:20:54,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:54,151 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-30_01-20-54.log] [testng] 01:20:54,152 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79bbe030 - End of configuration. [testng] [2024-03-30 01:20:54,175] [pool-1-thread-5] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 01:20:54,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:20:54,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:54,177 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-30_01-20-54.log] [testng] 01:20:54,178 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32219053 - End of configuration. [testng] [2024-03-30 01:20:54,272] [pool-1-thread-4] Initializing /data/cris/house.tif: [testng] 01:20:54,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:20:54,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:54,275 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-30_01-20-54.log] [testng] 01:20:54,275 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24de38e3 - End of configuration. [testng] [2024-03-30 01:20:54,389] [pool-1-thread-3] Initializing /data/big-images/8kx8k.psd: [testng] 01:20:54,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:20:54,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:54,391 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-30_01-20-54.log] [testng] 01:20:54,392 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7355781b - End of configuration. [testng] [2024-03-30 01:20:54,456] [pool-1-thread-2] Initializing /data/ascb/607x.psd: [testng] 01:20:54,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:20:54,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:54,458 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-30_01-20-54.log] [testng] 01:20:54,459 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6689024a - End of configuration. [testng] [2024-03-30 01:20:58,177] [pool-1-thread-12] Initializing /data/misc/vig_drawing_1.psd: [testng] [2024-03-30 01:20:58,220] [pool-1-thread-4] Initializing /data/misc/glossy_orbs.psd: [testng] [2024-03-30 01:20:58,231] [pool-1-thread-6] Initializing /data/misc/venus_composite_8bit.psd: [testng] [2024-03-30 01:20:58,289] [pool-1-thread-11] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] [2024-03-30 01:20:58,804] [pool-1-thread-5] Initializing /data/simon/colour_separated_image.psd: [testng] [2024-03-30 01:20:58,830] [pool-1-thread-8] Initializing /data/misc/venus_composite.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 41 seconds Finished: SUCCESS