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Started by upstream project "BIOFORMATS-test-repo" build number 132 originally caused by: Started by upstream project "Trigger" build number 152 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins2741699389899543705.sh + '[' apng = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_20764_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 11:55:44,951 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 11:55:44,953 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 11:55:44,953 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:55:44,954 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:55:44,954 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 11:55:44,954 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 11:55:44,955 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 11:55:44,955 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:55:44,955 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:55:44,956 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 11:55:44,956 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 11:55:44,956 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 11:55:45,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 11:55:45,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 11:55:45,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 11:55:45,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 11:55:45,167 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 11:55:45,167 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 11:55:45,168 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 11:55:45,168 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 11:55:45,168 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 11:55:45,169 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 11:55:45,169 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 214 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-25 11:55:45,182] [main] java.version = 21 [testng] 11:55:45,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:55:45,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:55:45,226 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-25_11-55-45.log] [testng] 11:55:45,227 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-07-25 11:55:45,229] [main] testng.directory = /data [testng] [2024-07-25 11:55:45,229] [main] testng.configDirectory = /config [testng] [2024-07-25 11:55:45,237] [main] testng.multiplier = 1.0 [testng] [2024-07-25 11:55:45,238] [main] testng.in-memory = false [testng] [2024-07-25 11:55:45,238] [main] testng.allow-missing = false [testng] [2024-07-25 11:55:45,238] [main] user.language = en [testng] [2024-07-25 11:55:45,238] [main] user.country = ${user.country} [testng] [2024-07-25 11:55:45,238] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-25 11:55:45,566] [main] ---------------------------------------- [testng] [2024-07-25 11:55:45,566] [main] Total files: 21 [testng] [2024-07-25 11:55:45,566] [main] Scan time: 0.328 s (15 ms/file) [testng] [2024-07-25 11:55:45,566] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-25 11:55:46,609] [pool-1-thread-1] Initializing /data/samples/william_wong05.png: [testng] 11:55:46,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 11:55:46,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:55:46,610 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-25_11-55-46.log] [testng] 11:55:46,611 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7232c983 - End of configuration. [testng] [2024-07-25 11:55:46,624] [pool-1-thread-12] Initializing /data/samples/daniel_coltri_two.png: [testng] 11:55:46,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:55:46,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:55:46,626 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-25_11-55-46.log] [testng] 11:55:46,626 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20cb239 - End of configuration. [testng] [2024-07-25 11:55:46,631] [pool-1-thread-11] Initializing /data/samples/MoonPhases.png: [testng] 11:55:46,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:55:46,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:55:46,632 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-25_11-55-46.log] [testng] 11:55:46,632 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66aae360 - End of configuration. [testng] [2024-07-25 11:55:46,643] [pool-1-thread-10] Initializing /data/samples/william_wong04.png: [testng] 11:55:46,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 11:55:46,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:55:46,644 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-25_11-55-46.log] [testng] 11:55:46,645 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f9b6eb0 - End of configuration. [testng] [2024-07-25 11:55:46,653] [pool-1-thread-9] Initializing /data/samples/Matrix.png: [testng] 11:55:46,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 11:55:46,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:55:46,655 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-25_11-55-46.log] [testng] 11:55:46,655 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16186c34 - End of configuration. [testng] [2024-07-25 11:55:46,660] [pool-1-thread-8] Initializing /data/samples/orbit.png: [testng] 11:55:46,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 11:55:46,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:55:46,661 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-25_11-55-46.log] [testng] 11:55:46,662 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67da1ccb - End of configuration. [testng] [2024-07-25 11:55:46,667] [pool-1-thread-7] Initializing /data/samples/monkey_apng.png: [testng] 11:55:46,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 11:55:46,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:55:46,668 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-25_11-55-46.log] [testng] 11:55:46,669 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5517ae99 - End of configuration. [testng] [2024-07-25 11:55:46,675] [pool-1-thread-6] Initializing /data/samples/william_wong02.png: [testng] 11:55:46,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 11:55:46,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:55:46,676 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-25_11-55-46.log] [testng] 11:55:46,677 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44a8ec3b - End of configuration. [testng] [2024-07-25 11:55:46,684] [pool-1-thread-5] Initializing /data/qa-7473/n.tif: [testng] 11:55:46,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 11:55:46,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:55:46,686 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-25_11-55-46.log] [testng] 11:55:46,686 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74801161 - End of configuration. [testng] [2024-07-25 11:55:46,719] [pool-1-thread-4] Initializing /data/samples/chompy2.png: [testng] 11:55:46,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:55:46,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:55:46,720 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-25_11-55-46.log] [testng] 11:55:46,721 |-INFO in ch.qos.logback.core.sift.SiftProcessor@453f54fc - End of configuration. [testng] [2024-07-25 11:55:46,727] [pool-1-thread-3] Initializing /data/samples/spinfox.png: [testng] 11:55:46,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 11:55:46,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:55:46,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-25_11-55-46.log] [testng] 11:55:46,729 |-INFO in ch.qos.logback.core.sift.SiftProcessor@569bd599 - End of configuration. [testng] [2024-07-25 11:55:46,737] [pool-1-thread-2] Initializing /data/samples/joanna_viera01.png: [testng] 11:55:46,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 11:55:46,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:55:46,739 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-25_11-55-46.log] [testng] 11:55:46,740 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65393c1e - End of configuration. [testng] [2024-07-25 11:55:47,947] [pool-1-thread-2] Initializing /data/samples/phug_logo.png: [testng] [2024-07-25 11:55:47,952] [pool-1-thread-12] Initializing /data/qa-7473/x.png: [testng] [2024-07-25 11:55:47,957] [pool-1-thread-1] Initializing /data/samples/atom.png: [testng] [2024-07-25 11:55:48,241] [pool-1-thread-10] Initializing /data/samples/PhugAnimation3.png: [testng] [2024-07-25 11:55:48,301] [pool-1-thread-8] Initializing /data/samples/StarV838.png: [testng] [2024-07-25 11:55:48,305] [pool-1-thread-6] Initializing /data/samples/daniel_coltri_one.png: [testng] [2024-07-25 11:55:48,313] [pool-1-thread-9] Initializing /data/colin/test.sfstdge.png: [testng] [2024-07-25 11:55:48,322] [pool-1-thread-4] Initializing /data/samples/Sun.png: [testng] [2024-07-25 11:55:48,330] [pool-1-thread-3] Initializing /data/samples/william_wong01.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 seconds Finished: SUCCESS