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Started by upstream project "BIOFORMATS-test-repo" build number 132 originally caused by: Started by upstream project "Trigger" build number 152 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins14618911812228350738.sh + '[' nikon-jp2 = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_20783_merge_ci -v /uod/idr/repos/curated/nikon-jp2:/data -v /uod/idr-scratch/merge-ci/curated/nikon-jp2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 12:12:15,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 12:12:15,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 12:12:15,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 12:12:15,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 12:12:15,413 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 12:12:15,414 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 12:12:15,414 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 12:12:15,414 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 12:12:15,415 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@428640fa - End of configuration. [testng] 12:12:15,415 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6bd61f98 - Registering current configuration as safe fallback point [testng] 12:12:15,416 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48aca48b - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 489 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-25 12:12:15,425] [main] java.version = 21 [testng] 12:12:15,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 12:12:15,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:12:15,545 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-25_12-12-15.log] [testng] 12:12:15,547 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-07-25 12:12:15,548] [main] testng.directory = /data [testng] [2024-07-25 12:12:15,549] [main] testng.configDirectory = /config [testng] [2024-07-25 12:12:15,570] [main] testng.multiplier = 1.0 [testng] [2024-07-25 12:12:15,571] [main] testng.in-memory = false [testng] [2024-07-25 12:12:15,571] [main] testng.allow-missing = false [testng] [2024-07-25 12:12:15,571] [main] user.language = en [testng] [2024-07-25 12:12:15,571] [main] user.country = ${user.country} [testng] [2024-07-25 12:12:15,571] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-25 12:12:16,237] [main] ---------------------------------------- [testng] [2024-07-25 12:12:16,237] [main] Total files: 11 [testng] [2024-07-25 12:12:16,237] [main] Scan time: 0.665 s (60 ms/file) [testng] [2024-07-25 12:12:16,238] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 11 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-25 12:12:18,196] [pool-1-thread-1] Initializing /data/kira/DapiFitcTexRed005.bmp: [testng] 12:12:18,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 12:12:18,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:12:18,199 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-25_12-12-18.log] [testng] 12:12:18,200 |-INFO in ch.qos.logback.core.sift.SiftProcessor@279ff569 - End of configuration. [testng] [2024-07-25 12:12:18,218] [pool-1-thread-11] Initializing /data/kira/DapiFitcTexRed008B.tif: [testng] 12:12:18,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 12:12:18,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:12:18,219 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-25_12-12-18.log] [testng] 12:12:18,219 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c1ff958 - End of configuration. [testng] [2024-07-25 12:12:18,281] [pool-1-thread-10] Initializing /data/kira/DapiFitcTexRed008BGR.tif: [testng] 12:12:18,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 12:12:18,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:12:18,283 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-25_12-12-18.log] [testng] 12:12:18,283 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a0a49fa - End of configuration. [testng] [2024-07-25 12:12:18,357] [pool-1-thread-9] Initializing /data/kira/DapiFitcTexRed007.gif: [testng] 12:12:18,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 12:12:18,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:12:18,358 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-25_12-12-18.log] [testng] 12:12:18,358 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18f8579 - End of configuration. [testng] [2024-07-25 12:12:18,380] [pool-1-thread-8] Initializing /data/kira/DapiFitcTexRed008.jp2: [testng] 12:12:18,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 12:12:18,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:12:18,381 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-25_12-12-18.log] [testng] 12:12:18,381 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a0512b4 - End of configuration. [testng] [2024-07-25 12:12:18,508] [pool-1-thread-7] Initializing /data/kira/DapiFitcTexRed003.jpg: [testng] 12:12:18,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 12:12:18,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:12:18,510 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-25_12-12-18.log] [testng] 12:12:18,510 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e0fbd05 - End of configuration. [testng] [2024-07-25 12:12:18,587] [pool-1-thread-6] Initializing /data/kira/DapiFitcTexRed008R.tif: [testng] 12:12:18,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 12:12:18,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:12:18,588 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-25_12-12-18.log] [testng] 12:12:18,589 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e6f929b - End of configuration. [testng] [2024-07-25 12:12:18,666] [pool-1-thread-5] Initializing /data/kira/DapiFitcTexRed008G.tif: [testng] 12:12:18,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 12:12:18,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:12:18,667 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-25_12-12-18.log] [testng] 12:12:18,667 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55e8dae0 - End of configuration. [testng] [2024-07-25 12:12:18,738] [pool-1-thread-4] Initializing /data/kira/DapiFitcTexRed006.png: [testng] 12:12:18,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 12:12:18,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:12:18,739 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-25_12-12-18.log] [testng] 12:12:18,740 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1641f0c1 - End of configuration. [testng] [2024-07-25 12:12:18,751] [pool-1-thread-3] Initializing /data/kira/DapiFitcTexRed004.tif: [testng] 12:12:18,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 12:12:18,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:12:18,753 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-25_12-12-18.log] [testng] 12:12:18,753 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31263295 - End of configuration. [testng] [2024-07-25 12:12:18,840] [pool-1-thread-2] Initializing /data/kira/DapiFitcTexRed001.jp2: [testng] 12:12:18,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 12:12:18,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:12:18,841 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-25_12-12-18.log] [testng] 12:12:18,842 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73e54831 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 583, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 seconds Finished: SUCCESS