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Started by upstream project "BIOFORMATS-test-repo" build number 133 originally caused by: Started by upstream project "Trigger" build number 153 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins14241742990021995554.sh + '[' pict = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_20852_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:33:14,555 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:33:14,557 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:33:14,557 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:33:14,558 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:33:14,558 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:33:14,559 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:33:14,559 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:33:14,559 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:33:14,559 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:33:14,560 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:33:14,560 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:33:14,560 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:33:14,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:33:14,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:33:14,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:33:14,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:33:14,829 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:33:14,829 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:33:14,829 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:33:14,830 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:33:14,830 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:33:14,831 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:33:14,831 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 272 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-26 01:33:14,841] [main] java.version = 1.8.0_342 [testng] 01:33:14,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:33:14,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:14,891 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-26_01-33-14.log] [testng] 01:33:14,893 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-26 01:33:14,895] [main] testng.directory = /data [testng] [2024-07-26 01:33:14,895] [main] testng.configDirectory = /config [testng] [2024-07-26 01:33:14,909] [main] testng.multiplier = 1.0 [testng] [2024-07-26 01:33:14,909] [main] testng.in-memory = false [testng] [2024-07-26 01:33:14,909] [main] testng.allow-missing = false [testng] [2024-07-26 01:33:14,909] [main] user.language = en [testng] [2024-07-26 01:33:14,909] [main] user.country = ${user.country} [testng] [2024-07-26 01:33:14,909] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-26 01:33:15,323] [main] ---------------------------------------- [testng] [2024-07-26 01:33:15,323] [main] Total files: 25 [testng] [2024-07-26 01:33:15,323] [main] Scan time: 0.412 s (16 ms/file) [testng] [2024-07-26 01:33:15,323] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-26 01:33:17,547] [pool-1-thread-1] Initializing /data/brian/images/BLU.PCT: [testng] 01:33:17,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:33:17,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:17,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-26_01-33-17.log] [testng] 01:33:17,549 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55c62e12 - End of configuration. [testng] [2024-07-26 01:33:17,579] [pool-1-thread-12] Initializing /data/brian/images/TRU256.PCT: [testng] 01:33:17,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:33:17,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:17,580 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-26_01-33-17.log] [testng] 01:33:17,581 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63fb5fb9 - End of configuration. [testng] [2024-07-26 01:33:17,598] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] 01:33:17,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:33:17,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:17,599 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-26_01-33-17.log] [testng] 01:33:17,600 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68b752e4 - End of configuration. [testng] [2024-07-26 01:33:17,618] [pool-1-thread-10] Initializing /data/brian/images/FLAG_B32.pct: [testng] 01:33:17,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:33:17,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:17,627 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-26_01-33-17.log] [testng] 01:33:17,627 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68fbca23 - End of configuration. [testng] [2024-07-26 01:33:17,660] [pool-1-thread-9] Initializing /data/brian/images/MARBLES_B32.pct: [testng] 01:33:17,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:33:17,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:17,662 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-26_01-33-17.log] [testng] 01:33:17,662 |-INFO in ch.qos.logback.core.sift.SiftProcessor@287cddbf - End of configuration. [testng] [2024-07-26 01:33:17,830] [pool-1-thread-8] Initializing /data/jqd/sixteenBit.pict: [testng] 01:33:17,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:33:17,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:17,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-26_01-33-17.log] [testng] 01:33:17,832 |-INFO in ch.qos.logback.core.sift.SiftProcessor@205ca225 - End of configuration. [testng] [2024-07-26 01:33:17,844] [pool-1-thread-7] Initializing /data/jqd/mire32.pict: [testng] 01:33:17,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:33:17,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:17,845 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-26_01-33-17.log] [testng] 01:33:17,846 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33526587 - End of configuration. [testng] [2024-07-26 01:33:17,857] [pool-1-thread-6] Initializing /data/jqd/mireSixteen.pict: [testng] 01:33:17,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:33:17,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:17,858 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-26_01-33-17.log] [testng] 01:33:17,858 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7571cc91 - End of configuration. [testng] [2024-07-26 01:33:17,866] [pool-1-thread-5] Initializing /data/wayne/PotatoMeristem.pict: [testng] 01:33:17,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:33:17,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:17,867 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-26_01-33-17.log] [testng] 01:33:17,868 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3207e1ac - End of configuration. [testng] [2024-07-26 01:33:17,910] [pool-1-thread-4] Initializing /data/brian/images/BLK.PCT: [testng] 01:33:17,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:33:17,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:17,911 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-26_01-33-17.log] [testng] 01:33:17,911 |-INFO in ch.qos.logback.core.sift.SiftProcessor@274d977d - End of configuration. [testng] [2024-07-26 01:33:17,932] [pool-1-thread-3] Initializing /data/brian/images/YEL.PCT: [testng] 01:33:17,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:33:17,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:17,933 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-26_01-33-17.log] [testng] 01:33:17,934 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22cbb6ac - End of configuration. [testng] [2024-07-26 01:33:17,956] [pool-1-thread-2] Initializing /data/brian/images/RED.PCT: [testng] 01:33:17,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:33:17,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:17,957 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-26_01-33-17.log] [testng] 01:33:17,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c443043 - End of configuration. [testng] [2024-07-26 01:33:19,462] [pool-1-thread-6] Initializing /data/jqd/32bit.pict: [testng] [2024-07-26 01:33:19,562] [pool-1-thread-8] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-07-26 01:33:19,591] [pool-1-thread-10] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] [2024-07-26 01:33:19,637] [pool-1-thread-7] Initializing /data/brian/images/VENUS.pct: [testng] [2024-07-26 01:33:19,669] [pool-1-thread-11] Initializing /data/misc/planet.png: [testng] [2024-07-26 01:33:19,679] [pool-1-thread-12] Initializing /data/misc/swlogo.pict: [testng] [2024-07-26 01:33:20,008] [pool-1-thread-3] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2024-07-26 01:33:20,020] [pool-1-thread-2] Initializing /data/misc/planet2.pict: [testng] [2024-07-26 01:33:20,042] [pool-1-thread-1] Initializing /data/misc/planet.pict: [testng] [2024-07-26 01:33:20,076] [pool-1-thread-4] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2024-07-26 01:33:20,156] [pool-1-thread-5] Initializing /data/brian/images/GRN.PCT: [testng] [2024-07-26 01:33:20,397] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] [2024-07-26 01:33:20,918] [pool-1-thread-12] Initializing /data/brian/images/WHT.PCT: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 10 seconds Finished: SUCCESS