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Started by upstream project "BIOFORMATS-test-repo" build number 133 originally caused by: Started by upstream project "Trigger" build number 153 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins12351158694258232530.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_20886_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:00:18,236 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:00:18,238 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:00:18,238 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:00:18,239 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:00:18,239 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:00:18,239 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:00:18,240 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:00:18,240 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:00:18,240 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:00:18,241 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:00:18,241 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:00:18,241 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:00:18,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:00:18,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:00:18,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:00:18,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:00:18,523 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:00:18,523 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:00:18,523 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:00:18,524 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:00:18,524 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:00:18,525 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:00:18,525 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 285 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-26 02:00:18,536] [main] java.version = 1.8.0_342 [testng] 02:00:18,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:00:18,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:18,589 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-26_02-00-18.log] [testng] 02:00:18,591 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-26 02:00:18,593] [main] testng.directory = /data [testng] [2024-07-26 02:00:18,594] [main] testng.configDirectory = /config [testng] [2024-07-26 02:00:18,607] [main] testng.multiplier = 1.0 [testng] [2024-07-26 02:00:18,607] [main] testng.in-memory = false [testng] [2024-07-26 02:00:18,608] [main] testng.allow-missing = false [testng] [2024-07-26 02:00:18,608] [main] user.language = en [testng] [2024-07-26 02:00:18,608] [main] user.country = ${user.country} [testng] [2024-07-26 02:00:18,608] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-26 02:07:40,370] [main] ---------------------------------------- [testng] [2024-07-26 02:07:40,370] [main] Total files: 7329 [testng] [2024-07-26 02:07:40,370] [main] Scan time: 441.762 s (60 ms/file) [testng] [2024-07-26 02:07:40,371] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-26 02:10:37,545] [pool-1-thread-1] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] 02:10:37,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:10:37,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:10:37,546 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-26_02-10-37.log] [testng] 02:10:37,547 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7714a6c4 - End of configuration. [testng] [2024-07-26 02:10:37,606] [pool-1-thread-12] Initializing /data/samples/zserSixteen.stk: [testng] 02:10:37,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:10:37,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:10:37,607 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-26_02-10-37.log] [testng] 02:10:37,607 |-INFO in ch.qos.logback.core.sift.SiftProcessor@325b8f34 - End of configuration. [testng] [2024-07-26 02:10:37,641] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] 02:10:37,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:10:37,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:10:37,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-26_02-10-37.log] [testng] 02:10:37,642 |-INFO in ch.qos.logback.core.sift.SiftProcessor@741231f - End of configuration. [testng] [2024-07-26 02:10:37,712] [pool-1-thread-10] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] 02:10:37,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:10:37,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:10:37,713 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-26_02-10-37.log] [testng] 02:10:37,713 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11196573 - End of configuration. [testng] [2024-07-26 02:10:37,802] [pool-1-thread-9] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] 02:10:37,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:10:37,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:10:37,803 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-26_02-10-37.log] [testng] 02:10:37,803 |-INFO in ch.qos.logback.core.sift.SiftProcessor@182e29a0 - End of configuration. [testng] [2024-07-26 02:10:37,935] [pool-1-thread-8] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] 02:10:37,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:10:37,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:10:37,935 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-26_02-10-37.log] [testng] 02:10:37,936 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b063fb6 - End of configuration. [testng] [2024-07-26 02:10:37,972] [pool-1-thread-7] Initializing /data/grant/XYZ_Image.STK: [testng] 02:10:37,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:10:37,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:10:37,973 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-26_02-10-37.log] [testng] 02:10:37,973 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5be1f9a3 - End of configuration. [testng] [2024-07-26 02:10:38,065] [pool-1-thread-6] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] 02:10:38,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:10:38,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:10:38,066 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-26_02-10-38.log] [testng] 02:10:38,067 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a46fc68 - End of configuration. [testng] [2024-07-26 02:10:38,205] [pool-1-thread-5] Initializing /data/ascb/C1 Stack.stk: [testng] 02:10:38,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:10:38,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:10:38,206 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-26_02-10-38.log] [testng] 02:10:38,206 |-INFO in ch.qos.logback.core.sift.SiftProcessor@413d2281 - End of configuration. [testng] [2024-07-26 02:10:38,253] [pool-1-thread-4] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] 02:10:38,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:10:38,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:10:38,254 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-26_02-10-38.log] [testng] 02:10:38,254 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b6b275 - End of configuration. [testng] [2024-07-26 02:10:38,352] [pool-1-thread-3] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] 02:10:38,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:10:38,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:10:38,353 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-26_02-10-38.log] [testng] 02:10:38,353 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a6c16b4 - End of configuration. [testng] [2024-07-26 02:10:38,529] [pool-1-thread-2] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] 02:10:38,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:10:38,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:10:38,530 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-26_02-10-38.log] [testng] 02:10:38,530 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78d29a03 - End of configuration. [testng] [2024-07-26 02:10:40,831] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-07-26 02:10:41,434] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-07-26 02:10:41,748] [pool-1-thread-6] Initializing /data/josh/2101to600b.stk: [testng] [2024-07-26 02:10:43,563] [pool-1-thread-11] Initializing /data/samples/10xcalib.stk: [testng] [2024-07-26 02:10:43,604] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-07-26 02:10:43,672] [pool-1-thread-5] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-07-26 02:10:44,382] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-07-26 02:10:44,511] [pool-1-thread-1] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-07-26 02:10:44,536] [pool-1-thread-10] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-07-26 02:10:44,888] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-07-26 02:10:45,070] [pool-1-thread-11] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-07-26 02:10:45,447] [pool-1-thread-1] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-07-26 02:10:46,029] [pool-1-thread-2] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-07-26 02:10:46,149] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-07-26 02:10:46,203] [pool-1-thread-4] Used files list does not include base file [testng] [2024-07-26 02:10:46,291] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-07-26 02:10:46,610] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-07-26 02:10:46,959] [pool-1-thread-1] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-07-26 02:10:48,267] [pool-1-thread-10] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-07-26 02:10:48,559] [pool-1-thread-2] Initializing /data/steve/Experiment2.tif: [testng] [2024-07-26 02:10:49,139] [pool-1-thread-12] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-07-26 02:10:49,258] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-07-26 02:10:49,342] [pool-1-thread-8] Used files list does not include base file [testng] [2024-07-26 02:10:49,566] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-07-26 02:10:49,888] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-07-26 02:10:49,913] [pool-1-thread-2] Used files list does not include base file [testng] [2024-07-26 02:10:50,007] [pool-1-thread-12] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-07-26 02:10:50,264] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-07-26 02:10:50,358] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-07-26 02:10:50,516] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-07-26 02:10:50,568] [pool-1-thread-4] Used files list does not include base file [testng] [2024-07-26 02:10:50,780] [pool-1-thread-3] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-07-26 02:10:50,841] [pool-1-thread-7] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-07-26 02:10:50,906] [pool-1-thread-10] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-07-26 02:10:51,245] [pool-1-thread-5] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-07-26 02:10:52,009] [pool-1-thread-7] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2024-07-26 02:10:52,081] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-07-26 02:10:52,337] [pool-1-thread-10] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-07-26 02:10:52,499] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-07-26 02:10:52,522] [pool-1-thread-3] Used files list does not include base file [testng] [2024-07-26 02:10:52,658] [pool-1-thread-2] Initializing 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-07-26 02:11:03,508] [pool-1-thread-12] Initializing /data/josh/2101to800.stk: [testng] [2024-07-26 02:11:04,259] [pool-1-thread-11] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-07-26 02:11:04,453] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-07-26 02:11:04,494] [pool-1-thread-7] Initializing /data/jerome/deconv.STK: [testng] [2024-07-26 02:11:04,666] [pool-1-thread-5] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-07-26 02:11:05,081] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-07-26 02:11:05,207] [pool-1-thread-7] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-07-26 02:11:05,433] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-07-26 02:11:05,787] [pool-1-thread-9] Initializing /data/david/tl4.tif: [testng] [2024-07-26 02:11:06,264] [pool-1-thread-6] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-26 02:11:06,500] [pool-1-thread-3] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-07-26 02:11:07,023] [pool-1-thread-5] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-07-26 02:11:07,537] [pool-1-thread-7] Initializing /data/alex/Selected FITC.stk: [testng] [2024-07-26 02:11:07,585] [pool-1-thread-11] Initializing /data/josh/2101to400astk.stk: [testng] [2024-07-26 02:11:10,290] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-26 02:11:10,582] [pool-1-thread-7] Initializing /data/steve/Experiment2.stk: [testng] [2024-07-26 02:11:11,254] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-26 02:11:11,333] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-26 02:11:11,453] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-07-26 02:11:11,476] [pool-1-thread-8] Used files list does not include base file [testng] [2024-07-26 02:11:11,571] [pool-1-thread-6] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-07-26 02:11:12,572] [pool-1-thread-12] Initializing /data/jae/RGB_s34.tif: [testng] [2024-07-26 02:11:13,135] [pool-1-thread-8] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-07-26 02:11:14,031] [pool-1-thread-4] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-07-26 02:11:14,614] [pool-1-thread-9] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-07-26 02:11:14,837] [pool-1-thread-7] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-07-26 02:11:14,957] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-07-26 02:11:14,984] [pool-1-thread-9] Used files list does not include base file [testng] [2024-07-26 02:11:15,004] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-26 02:11:15,935] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-07-26 02:11:16,179] [pool-1-thread-4] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-07-26 02:11:16,826] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-07-26 02:11:16,884] [pool-1-thread-12] Used files list does not include base file [testng] [2024-07-26 02:11:17,232] [pool-1-thread-9] Initializing 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02:11:28,167] [pool-1-thread-7] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-07-26 02:11:28,328] [pool-1-thread-10] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-07-26 02:11:28,768] [pool-1-thread-3] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-07-26 02:11:28,948] [pool-1-thread-4] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-07-26 02:11:29,464] [pool-1-thread-11] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-07-26 02:11:29,527] [pool-1-thread-7] Initializing /data/samples/diatoms3d.stk: [testng] [2024-07-26 02:11:29,962] [pool-1-thread-7] Initializing /data/qa-16915/m-02.tif: [testng] [2024-07-26 02:11:30,507] [pool-1-thread-3] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-07-26 02:11:31,319] [pool-1-thread-4] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-07-26 02:11:31,520] [pool-1-thread-3] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-07-26 02:11:34,523] [pool-1-thread-11] Initializing /data/qa-16915/m-04.tif: [testng] [2024-07-26 02:11:35,438] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-07-26 02:11:36,030] [pool-1-thread-10] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-07-26 02:11:36,977] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-26 02:11:37,350] [pool-1-thread-4] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-07-26 02:11:38,381] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-07-26 02:11:38,717] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-07-26 02:11:39,034] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-07-26 02:11:39,304] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-07-26 02:11:41,842] [pool-1-thread-6] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-07-26 02:11:43,672] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-07-26 02:11:44,202] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-07-26 02:11:44,434] [pool-1-thread-4] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-07-26 02:11:45,879] [pool-1-thread-10] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-07-26 02:11:45,965] [pool-1-thread-4] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-07-26 02:11:46,132] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] 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02:12:02,742] [pool-1-thread-7] Initializing /data/samples/10xcalib.tif: [testng] [2024-07-26 02:12:02,779] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-07-26 02:12:02,871] [pool-1-thread-5] Used files list does not include base file [testng] [2024-07-26 02:12:02,873] [pool-1-thread-10] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-07-26 02:12:03,070] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-07-26 02:12:05,588] [pool-1-thread-11] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-07-26 02:12:05,811] [pool-1-thread-7] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-07-26 02:12:05,890] [pool-1-thread-2] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-07-26 02:12:06,024] [pool-1-thread-10] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-07-26 02:12:06,399] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-07-26 02:12:06,920] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-07-26 02:12:07,555] [pool-1-thread-2] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-07-26 02:12:07,624] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-07-26 02:12:07,716] [pool-1-thread-4] Initializing /data/josh/2101to600e.stk: [testng] [2024-07-26 02:12:08,348] [pool-1-thread-7] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-07-26 02:12:08,799] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-07-26 02:12:08,898] [pool-1-thread-2] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-07-26 02:12:09,311] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-26 02:12:09,617] [pool-1-thread-7] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-07-26 02:12:09,747] [pool-1-thread-2] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-07-26 02:12:10,150] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-07-26 02:12:10,194] [pool-1-thread-12] Used files list does not include base file [testng] [2024-07-26 02:12:10,255] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-26 02:12:10,599] [pool-1-thread-10] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-07-26 02:12:11,062] [pool-1-thread-5] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-07-26 02:12:11,125] [pool-1-thread-9] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-07-26 02:12:11,352] [pool-1-thread-2] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-07-26 02:12:11,738] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-07-26 02:12:11,757] [pool-1-thread-9] Used files list does not include base file [testng] [2024-07-26 02:12:11,912] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-07-26 02:12:11,977] [pool-1-thread-7] Used files list does not include base file [testng] [2024-07-26 02:12:12,110] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-07-26 02:12:12,155] [pool-1-thread-10] Used files list does not include base file [testng] [2024-07-26 02:12:12,165] [pool-1-thread-9] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-07-26 02:12:12,686] [pool-1-thread-4] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-07-26 02:12:12,738] [pool-1-thread-5] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-07-26 02:12:13,009] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-07-26 02:12:13,202] [pool-1-thread-4] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-07-26 02:12:13,315] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-26 02:12:13,367] [pool-1-thread-2] Initializing /data/ascb/mt aim.tif: [testng] [2024-07-26 02:12:13,416] [pool-1-thread-5] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-07-26 02:12:14,069] [pool-1-thread-4] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-07-26 02:12:14,556] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-07-26 02:12:14,597] [pool-1-thread-2] Used files list does not include base file [testng] [2024-07-26 02:12:14,838] [pool-1-thread-7] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-07-26 02:12:14,892] [pool-1-thread-12] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-07-26 02:12:15,152] [pool-1-thread-9] Initializing /data/samples/zser24.stk: [testng] [2024-07-26 02:12:15,204] [pool-1-thread-10] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-07-26 02:12:15,408] [pool-1-thread-5] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-07-26 02:12:15,644] [pool-1-thread-11] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-07-26 02:12:15,730] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-26 02:12:16,137] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-07-26 02:12:16,222] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-07-26 02:12:16,636] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-07-26 02:12:16,978] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-07-26 02:12:17,238] [pool-1-thread-7] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-07-26 02:12:19,549] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-07-26 02:12:19,613] [pool-1-thread-12] Used files list does not include base file [testng] [2024-07-26 02:12:19,686] [pool-1-thread-9] Initializing /data/thomas/t_test2001.tif: [testng] [2024-07-26 02:12:19,822] [pool-1-thread-2] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-07-26 02:12:19,892] [pool-1-thread-10] Initializing /data/grant/X.STK: [testng] [2024-07-26 02:12:20,039] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-07-26 02:12:20,608] [pool-1-thread-9] Initializing /data/qa-16915/m-01.tif: [testng] [2024-07-26 02:12:21,385] [pool-1-thread-2] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-07-26 02:12:21,901] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-07-26 02:12:22,442] [pool-1-thread-8] Initializing /data/aaron/metamorph.stk: [testng] [2024-07-26 02:12:22,955] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-07-26 02:12:23,117] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-07-26 02:12:23,673] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-26 02:12:24,083] [pool-1-thread-9] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-07-26 02:12:24,200] [pool-1-thread-12] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-07-26 02:12:24,264] [pool-1-thread-10] Initializing /data/thomas/test.tif: [testng] [2024-07-26 02:12:24,895] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-07-26 02:12:24,937] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-07-26 02:12:25,198] [pool-1-thread-9] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-07-26 02:12:25,476] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-07-26 02:12:25,615] [pool-1-thread-5] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-07-26 02:12:25,684] [pool-1-thread-11] Initializing /data/qa-16887/m-01.tif: [testng] [2024-07-26 02:12:26,085] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 20 minutes 22 seconds Finished: SUCCESS