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Started by upstream project "BIOFORMATS-test-repo" build number 133 originally caused by: Started by upstream project "Trigger" build number 153 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins16016047484486888810.sh + '[' apng = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_20928_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:29:44,371 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:29:44,373 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:29:44,373 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:29:44,374 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:29:44,374 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:29:44,374 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:29:44,375 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:29:44,375 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:29:44,375 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:29:44,376 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:29:44,376 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:29:44,376 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:29:44,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:29:44,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:29:44,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:29:44,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:29:44,737 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:29:44,737 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:29:44,737 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:29:44,737 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:29:44,738 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:29:44,739 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:29:44,739 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 364 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-26 02:29:44,756] [main] java.version = 1.8.0_342 [testng] 02:29:44,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:29:44,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:44,824 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-26_02-29-44.log] [testng] 02:29:44,826 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-26 02:29:44,829] [main] testng.directory = /data [testng] [2024-07-26 02:29:44,829] [main] testng.configDirectory = /config [testng] [2024-07-26 02:29:44,844] [main] testng.multiplier = 1.0 [testng] [2024-07-26 02:29:44,845] [main] testng.in-memory = false [testng] [2024-07-26 02:29:44,845] [main] testng.allow-missing = false [testng] [2024-07-26 02:29:44,845] [main] user.language = en [testng] [2024-07-26 02:29:44,845] [main] user.country = ${user.country} [testng] [2024-07-26 02:29:44,845] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-26 02:29:45,319] [main] ---------------------------------------- [testng] [2024-07-26 02:29:45,319] [main] Total files: 21 [testng] [2024-07-26 02:29:45,320] [main] Scan time: 0.474 s (22 ms/file) [testng] [2024-07-26 02:29:45,320] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-26 02:29:46,899] [pool-1-thread-1] Initializing /data/samples/Sun.png: [testng] 02:29:46,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:29:46,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:46,900 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-26_02-29-46.log] [testng] 02:29:46,900 |-INFO in ch.qos.logback.core.sift.SiftProcessor@568a0f76 - End of configuration. [testng] [2024-07-26 02:29:46,949] [pool-1-thread-12] Initializing /data/samples/atom.png: [testng] 02:29:46,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:29:46,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:46,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-26_02-29-46.log] [testng] 02:29:46,950 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a09e342 - End of configuration. [testng] [2024-07-26 02:29:46,954] [pool-1-thread-11] Initializing /data/samples/orbit.png: [testng] 02:29:46,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:29:46,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:46,955 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-26_02-29-46.log] [testng] 02:29:46,956 |-INFO in ch.qos.logback.core.sift.SiftProcessor@643bac97 - End of configuration. [testng] [2024-07-26 02:29:46,961] [pool-1-thread-10] Initializing /data/samples/monkey_apng.png: [testng] 02:29:46,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:29:46,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:46,962 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-26_02-29-46.log] [testng] 02:29:46,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47b19949 - End of configuration. [testng] [2024-07-26 02:29:46,971] [pool-1-thread-9] Initializing /data/qa-7473/x.png: [testng] 02:29:46,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:29:46,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:46,972 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-26_02-29-46.log] [testng] 02:29:46,972 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a603d2f - End of configuration. [testng] [2024-07-26 02:29:46,985] [pool-1-thread-8] Initializing /data/samples/william_wong04.png: [testng] 02:29:46,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:29:46,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:46,986 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-26_02-29-46.log] [testng] 02:29:46,987 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7acefbd7 - End of configuration. [testng] [2024-07-26 02:29:46,994] [pool-1-thread-7] Initializing /data/samples/daniel_coltri_two.png: [testng] 02:29:46,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:29:46,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:46,995 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-26_02-29-46.log] [testng] 02:29:46,996 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e866581 - End of configuration. [testng] [2024-07-26 02:29:47,003] [pool-1-thread-6] Initializing /data/qa-7473/n.tif: [testng] 02:29:47,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:29:47,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:47,004 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-26_02-29-47.log] [testng] 02:29:47,005 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c43f26 - End of configuration. [testng] [2024-07-26 02:29:47,039] [pool-1-thread-5] Initializing /data/samples/MoonPhases.png: [testng] 02:29:47,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:29:47,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:47,040 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-26_02-29-47.log] [testng] 02:29:47,041 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d07845f - End of configuration. [testng] [2024-07-26 02:29:47,049] [pool-1-thread-4] Initializing /data/samples/joanna_viera01.png: [testng] 02:29:47,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:29:47,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:47,050 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-26_02-29-47.log] [testng] 02:29:47,050 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3522a6ff - End of configuration. [testng] [2024-07-26 02:29:47,056] [pool-1-thread-3] Initializing /data/samples/Matrix.png: [testng] 02:29:47,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:29:47,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:47,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-26_02-29-47.log] [testng] 02:29:47,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30ab4ee6 - End of configuration. [testng] [2024-07-26 02:29:47,062] [pool-1-thread-2] Initializing /data/samples/phug_logo.png: [testng] 02:29:47,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:29:47,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:47,063 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-26_02-29-47.log] [testng] 02:29:47,064 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d84095c - End of configuration. [testng] [2024-07-26 02:29:48,723] [pool-1-thread-4] Initializing /data/samples/william_wong02.png: [testng] [2024-07-26 02:29:48,733] [pool-1-thread-8] Initializing /data/samples/spinfox.png: [testng] [2024-07-26 02:29:48,738] [pool-1-thread-12] Initializing /data/samples/william_wong01.png: [testng] [2024-07-26 02:29:48,743] [pool-1-thread-11] Initializing /data/samples/william_wong05.png: [testng] [2024-07-26 02:29:48,755] [pool-1-thread-3] Initializing /data/colin/test.sfstdge.png: [testng] [2024-07-26 02:29:48,760] [pool-1-thread-2] Initializing /data/samples/daniel_coltri_one.png: [testng] [2024-07-26 02:29:48,768] [pool-1-thread-5] Initializing /data/samples/PhugAnimation3.png: [testng] [2024-07-26 02:29:48,776] [pool-1-thread-10] Initializing /data/samples/chompy2.png: [testng] [2024-07-26 02:29:48,782] [pool-1-thread-1] Initializing /data/samples/StarV838.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 10 seconds Finished: SUCCESS