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Started by upstream project "BIOFORMATS-test-repo" build number 134 originally caused by: Started by upstream project "Trigger" build number 154 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins225541002923461182.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_21050_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:49:11,377 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:49:11,379 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:49:11,379 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:49:11,380 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:49:11,381 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:49:11,381 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:49:11,382 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:49:11,382 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:49:11,382 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:49:11,383 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:49:11,383 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:49:11,383 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:49:11,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:49:11,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:49:11,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:49:11,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:49:11,632 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:49:11,632 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:49:11,632 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:49:11,633 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:49:11,633 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:49:11,634 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:49:11,634 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 252 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-27 01:49:11,643] [main] java.version = 11.0.16 [testng] 01:49:11,646 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:49:11,646 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:11,690 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-27_01-49-11.log] [testng] 01:49:11,691 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-07-27 01:49:11,694] [main] testng.directory = /data [testng] [2024-07-27 01:49:11,694] [main] testng.configDirectory = /config [testng] [2024-07-27 01:49:11,704] [main] testng.multiplier = 1.0 [testng] [2024-07-27 01:49:11,706] [main] testng.in-memory = false [testng] [2024-07-27 01:49:11,707] [main] testng.allow-missing = false [testng] [2024-07-27 01:49:11,707] [main] user.language = en [testng] [2024-07-27 01:49:11,707] [main] user.country = ${user.country} [testng] [2024-07-27 01:49:11,707] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-27 01:56:45,395] [main] ---------------------------------------- [testng] [2024-07-27 01:56:45,395] [main] Total files: 7329 [testng] [2024-07-27 01:56:45,395] [main] Scan time: 453.688 s (61 ms/file) [testng] [2024-07-27 01:56:45,396] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-27 01:59:31,759] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] 01:59:31,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:59:31,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:31,762 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-27_01-59-31.log] [testng] 01:59:31,763 |-INFO in ch.qos.logback.core.sift.SiftProcessor@949cd49 - End of configuration. [testng] [2024-07-27 01:59:31,985] [pool-1-thread-1] Used files list does not include base file [testng] [2024-07-27 01:59:31,994] [pool-1-thread-12] Initializing /data/josh/2101to600e.stk: [testng] 01:59:31,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:59:31,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:31,995 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-27_01-59-31.log] [testng] 01:59:31,995 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ec960d9 - End of configuration. [testng] [2024-07-27 01:59:32,737] [pool-1-thread-11] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] 01:59:32,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:59:32,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:32,738 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-27_01-59-32.log] [testng] 01:59:32,739 |-INFO in ch.qos.logback.core.sift.SiftProcessor@632cb66e - End of configuration. [testng] [2024-07-27 01:59:32,847] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] 01:59:32,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:59:32,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:32,848 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-27_01-59-32.log] [testng] 01:59:32,849 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7592d7f6 - End of configuration. [testng] [2024-07-27 01:59:32,944] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] 01:59:32,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:59:32,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:32,944 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-27_01-59-32.log] [testng] 01:59:32,945 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58905f25 - End of configuration. [testng] [2024-07-27 01:59:33,007] [pool-1-thread-9] Used files list does not include base file [testng] [2024-07-27 01:59:33,009] [pool-1-thread-8] Initializing /data/dave/Z Series.stk: [testng] 01:59:33,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:59:33,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:33,010 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-27_01-59-33.log] [testng] 01:59:33,010 |-INFO in ch.qos.logback.core.sift.SiftProcessor@95a37a7 - End of configuration. [testng] [2024-07-27 01:59:33,088] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] 01:59:33,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:59:33,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:33,089 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-27_01-59-33.log] [testng] 01:59:33,089 |-INFO in ch.qos.logback.core.sift.SiftProcessor@475d8e74 - End of configuration. [testng] [2024-07-27 01:59:33,135] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] 01:59:33,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:59:33,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:33,136 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-27_01-59-33.log] [testng] 01:59:33,137 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e5d7720 - End of configuration. [testng] [2024-07-27 01:59:33,231] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] 01:59:33,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:59:33,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:33,232 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-27_01-59-33.log] [testng] 01:59:33,232 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cd13ab1 - End of configuration. [testng] [2024-07-27 01:59:33,304] [pool-1-thread-5] Used files list does not include base file [testng] [2024-07-27 01:59:33,311] [pool-1-thread-4] Initializing /data/qa-31304/Well _C6_1.tif: [testng] 01:59:33,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:59:33,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:33,312 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-27_01-59-33.log] [testng] 01:59:33,313 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e04d38f - End of configuration. [testng] [2024-07-27 01:59:33,456] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] 01:59:33,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:59:33,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:33,457 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-27_01-59-33.log] [testng] 01:59:33,458 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22636665 - End of configuration. [testng] [2024-07-27 01:59:33,553] [pool-1-thread-2] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] 01:59:33,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:59:33,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:33,554 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-27_01-59-33.log] [testng] 01:59:33,554 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12718845 - End of configuration. [testng] [2024-07-27 01:59:35,508] [pool-1-thread-7] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-07-27 01:59:35,900] [pool-1-thread-8] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-07-27 01:59:36,122] [pool-1-thread-11] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-07-27 01:59:36,286] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-07-27 01:59:36,354] [pool-1-thread-10] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-07-27 01:59:36,861] [pool-1-thread-6] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-07-27 01:59:37,087] [pool-1-thread-4] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-07-27 01:59:37,210] [pool-1-thread-7] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-07-27 01:59:37,690] [pool-1-thread-11] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-07-27 01:59:38,166] [pool-1-thread-3] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-07-27 01:59:38,594] [pool-1-thread-7] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-07-27 01:59:38,708] [pool-1-thread-1] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-07-27 01:59:38,775] [pool-1-thread-4] Initializing /data/samples/zseries.stk: [testng] [2024-07-27 01:59:38,940] [pool-1-thread-5] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-07-27 01:59:39,175] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-07-27 01:59:39,213] [pool-1-thread-9] Used files list does not include base file [testng] [2024-07-27 01:59:39,315] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-07-27 01:59:39,408] [pool-1-thread-11] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-07-27 01:59:39,478] [pool-1-thread-6] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-07-27 01:59:40,177] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-07-27 01:59:40,296] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-07-27 01:59:40,432] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-07-27 01:59:40,695] [pool-1-thread-9] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-07-27 01:59:40,754] [pool-1-thread-4] Initializing /data/steve/Experiment2.stk: [testng] [2024-07-27 01:59:40,871] [pool-1-thread-3] Initializing /data/josh/2101to600f.stk: [testng] [2024-07-27 01:59:43,528] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-07-27 01:59:43,587] [pool-1-thread-12] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-07-27 01:59:43,929] [pool-1-thread-9] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-07-27 01:59:44,315] [pool-1-thread-8] Initializing /data/david/tl4.tif: [testng] [2024-07-27 01:59:44,745] [pool-1-thread-1] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-07-27 01:59:45,007] [pool-1-thread-7] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-07-27 01:59:45,083] [pool-1-thread-4] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-07-27 01:59:45,196] [pool-1-thread-10] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-07-27 01:59:45,691] [pool-1-thread-5] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-07-27 01:59:46,698] [pool-1-thread-11] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-07-27 01:59:46,763] [pool-1-thread-1] Initializing /data/samples/zserEight.stk: [testng] [2024-07-27 01:59:47,145] [pool-1-thread-12] Initializing /data/aaron/metamorph.stk: [testng] [2024-07-27 01:59:47,426] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-27 01:59:47,524] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-07-27 01:59:47,880] [pool-1-thread-11] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-07-27 01:59:51,151] [pool-1-thread-10] Initializing /data/alex/Selected FITC.stk: [testng] [2024-07-27 01:59:51,217] [pool-1-thread-12] Initializing /data/samples/zser24.stk: [testng] [2024-07-27 01:59:51,436] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-07-27 01:59:51,607] [pool-1-thread-7] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-07-27 01:59:51,797] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-27 01:59:52,039] [pool-1-thread-4] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-07-27 01:59:52,390] [pool-1-thread-10] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-07-27 01:59:52,774] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-07-27 01:59:53,363] [pool-1-thread-4] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-07-27 01:59:53,957] [pool-1-thread-10] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-07-27 01:59:57,111] [pool-1-thread-6] Initializing 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[pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-07-27 01:59:59,065] [pool-1-thread-6] Used files list does not include base file [testng] [2024-07-27 01:59:59,377] [pool-1-thread-9] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-07-27 01:59:59,645] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-27 01:59:59,727] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-07-27 01:59:59,815] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-07-27 02:00:01,182] [pool-1-thread-9] Initializing /data/josh/2101to400astk.stk: [testng] [2024-07-27 02:00:03,195] [pool-1-thread-8] Initializing /data/qa-16887/m-01.tif: [testng] [2024-07-27 02:00:03,712] [pool-1-thread-1] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-07-27 02:00:03,816] 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-07-27 02:00:05,108] [pool-1-thread-6] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-07-27 02:00:05,673] [pool-1-thread-10] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-07-27 02:00:05,927] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-07-27 02:00:06,028] [pool-1-thread-1] Used files list does not include base file [testng] [2024-07-27 02:00:06,159] [pool-1-thread-6] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-07-27 02:00:06,770] [pool-1-thread-3] Initializing /data/samples/10xcalib.stk: [testng] [2024-07-27 02:00:07,209] [pool-1-thread-8] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-07-27 02:00:07,485] [pool-1-thread-10] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-27 02:00:07,568] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-07-27 02:00:07,789] [pool-1-thread-3] Initializing /data/josh/2101to600b.stk: [testng] [2024-07-27 02:00:09,558] [pool-1-thread-6] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-07-27 02:00:10,368] [pool-1-thread-4] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-07-27 02:00:10,599] [pool-1-thread-8] Initializing /data/cumol-test-series/23.001: [testng] [2024-07-27 02:00:11,014] [pool-1-thread-10] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-07-27 02:00:11,749] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-07-27 02:00:11,788] [pool-1-thread-4] Used files list does not include base file [testng] [2024-07-27 02:00:11,789] [pool-1-thread-2] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-07-27 02:00:11,848] [pool-1-thread-6] Initializing 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[pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-07-27 02:00:28,066] [pool-1-thread-12] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-07-27 02:00:28,408] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-07-27 02:00:28,756] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-27 02:00:29,377] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-07-27 02:00:29,998] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-07-27 02:00:31,103] [pool-1-thread-9] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-07-27 02:00:32,001] [pool-1-thread-6] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-07-27 02:00:32,464] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-07-27 02:00:33,057] [pool-1-thread-3] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-07-27 02:00:33,157] [pool-1-thread-8] Initializing /data/steve/Experiment2.tif: [testng] [2024-07-27 02:00:33,827] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-07-27 02:00:34,075] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-07-27 02:00:34,401] [pool-1-thread-5] Initializing /data/jerome/deconv.STK: [testng] [2024-07-27 02:00:34,961] [pool-1-thread-3] Initializing /data/qa-16915/m-04.tif: [testng] [2024-07-27 02:00:35,575] [pool-1-thread-8] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-07-27 02:00:35,846] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full 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[pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-27 02:00:41,505] [pool-1-thread-3] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-07-27 02:00:42,632] [pool-1-thread-8] Initializing /data/thomas/test.tif: [testng] [2024-07-27 02:00:42,822] [pool-1-thread-1] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-07-27 02:00:42,925] [pool-1-thread-6] Initializing /data/qa-16915/m-02.tif: [testng] [2024-07-27 02:00:44,245] [pool-1-thread-8] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-07-27 02:00:44,644] [pool-1-thread-1] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-07-27 02:00:45,101] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-07-27 02:00:45,192] [pool-1-thread-2] Used files list does not include base file [testng] [2024-07-27 02:00:45,233] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-07-27 02:00:47,776] [pool-1-thread-5] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-07-27 02:00:47,913] [pool-1-thread-10] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-07-27 02:00:48,804] [pool-1-thread-12] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-07-27 02:00:49,003] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-07-27 02:00:49,914] [pool-1-thread-10] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-07-27 02:00:50,171] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-07-27 02:00:50,670] [pool-1-thread-6] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-07-27 02:00:52,577] [pool-1-thread-12] Initializing 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02:00:55,841] [pool-1-thread-2] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-07-27 02:00:56,693] [pool-1-thread-12] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-07-27 02:00:57,213] [pool-1-thread-2] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-07-27 02:00:57,400] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-27 02:00:57,805] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-07-27 02:00:58,119] [pool-1-thread-2] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-07-27 02:00:58,403] [pool-1-thread-10] Initializing /data/thomas/t_test2001.tif: [testng] [2024-07-27 02:00:58,539] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-07-27 02:00:58,620] [pool-1-thread-1] Used files list does not include base file [testng] [2024-07-27 02:00:59,014] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-07-27 02:00:59,051] [pool-1-thread-3] Used files list does not include base file [testng] [2024-07-27 02:00:59,166] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-07-27 02:00:59,319] [pool-1-thread-10] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-07-27 02:00:59,916] [pool-1-thread-3] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-07-27 02:01:00,209] [pool-1-thread-2] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-07-27 02:01:00,633] [pool-1-thread-12] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-07-27 02:01:01,269] [pool-1-thread-3] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-07-27 02:01:08,108] [pool-1-thread-2] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-07-27 02:01:08,178] [pool-1-thread-9] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-07-27 02:01:09,067] [pool-1-thread-12] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-07-27 02:01:09,153] [pool-1-thread-1] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-07-27 02:01:09,434] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-07-27 02:01:09,523] [pool-1-thread-5] Used files list does not include base file [testng] [2024-07-27 02:01:09,707] [pool-1-thread-2] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-07-27 02:01:10,763] [pool-1-thread-2] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-07-27 02:01:10,933] [pool-1-thread-9] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-07-27 02:01:11,642] [pool-1-thread-12] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-07-27 02:01:12,918] [pool-1-thread-2] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-07-27 02:01:13,290] [pool-1-thread-9] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-07-27 02:01:13,374] [pool-1-thread-12] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-07-27 02:01:13,636] [pool-1-thread-5] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-07-27 02:01:14,673] [pool-1-thread-9] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-07-27 02:01:14,868] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-07-27 02:01:15,226] [pool-1-thread-8] Initializing /data/qa-16915/m-01.tif: [testng] [2024-07-27 02:01:16,275] [pool-1-thread-9] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-07-27 02:01:16,674] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-07-27 02:01:16,757] [pool-1-thread-12] Used files list does not include base file [testng] [2024-07-27 02:01:17,428] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-07-27 02:01:17,483] [pool-1-thread-5] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-07-27 02:01:18,142] [pool-1-thread-9] Initializing /data/jae/RGB_s34.tif: [testng] [2024-07-27 02:01:19,729] [pool-1-thread-8] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-07-27 02:01:19,763] [pool-1-thread-2] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-07-27 02:01:20,762] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-07-27 02:01:20,827] [pool-1-thread-5] Used files list does not include base file [testng] [2024-07-27 02:01:21,179] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-07-27 02:01:21,420] [pool-1-thread-8] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-07-27 02:01:21,699] [pool-1-thread-12] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-07-27 02:01:22,493] [pool-1-thread-8] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-07-27 02:01:22,955] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-07-27 02:01:23,242] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-27 02:01:24,329] [pool-1-thread-10] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-07-27 02:01:24,682] [pool-1-thread-5] Initializing /data/ascb/mt aim.tif: [testng] [2024-07-27 02:01:25,176] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-07-27 02:01:25,709] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-07-27 02:01:26,047] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-07-27 02:01:26,284] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-27 02:01:26,748] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-07-27 02:01:27,105] [pool-1-thread-10] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-07-27 02:01:28,532] [pool-1-thread-2] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-07-27 02:01:28,664] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-07-27 02:01:28,847] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-07-27 02:01:29,056] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-07-27 02:01:29,105] [pool-1-thread-8] Used files list does not include base file [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 20 minutes 46 seconds Finished: SUCCESS