Skip to content
[Jenkins]Jenkins
log in

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 134
originally caused by:
 Started by upstream project "Trigger" build number 154
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins4970260668053019735.sh
+ '[' fluoview = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_21064_merge_ci -v /uod/idr/repos/curated/fluoview:/data -v /uod/idr-scratch/merge-ci/curated/fluoview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 02:02:49,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:02:49,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:02:49,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:02:49,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:02:49,850 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:02:49,850 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:02:49,850 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:02:49,851 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:02:49,851 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@41a0aa7d - End of configuration.
   [testng] 02:02:49,852 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6574a52c - Registering current configuration as safe fallback point
   [testng] 02:02:49,852 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c1a5b54 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 582 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-07-27 02:02:49,863] [main] java.version = 11.0.16
   [testng] 02:02:49,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:02:49,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:02:50,051 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-27_02-02-49.log]
   [testng] 02:02:50,053 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-07-27 02:02:50,103] [main] testng.directory = /data
   [testng] [2024-07-27 02:02:50,104] [main] testng.configDirectory = /config
   [testng] [2024-07-27 02:02:50,176] [main] testng.multiplier = 1.0
   [testng] [2024-07-27 02:02:50,179] [main] testng.in-memory = false
   [testng] [2024-07-27 02:02:50,179] [main] testng.allow-missing = false
   [testng] [2024-07-27 02:02:50,179] [main] user.language = en
   [testng] [2024-07-27 02:02:50,179] [main] user.country = ${user.country}
   [testng] [2024-07-27 02:02:50,179] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-07-27 02:02:51,082] [main] ----------------------------------------
   [testng] [2024-07-27 02:02:51,082] [main] Total files: 14
   [testng] [2024-07-27 02:02:51,082] [main] Scan time: 0.903 s (64 ms/file)
   [testng] [2024-07-27 02:02:51,083] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 13 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-07-27 02:02:56,879] [pool-1-thread-1] Initializing /data/timg/LiveThree-xyzt.tif: 
   [testng] 02:02:56,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:02:56,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:02:56,881 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-27_02-02-56.log]
   [testng] 02:02:56,882 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55c81cec - End of configuration.
   [testng] [2024-07-27 02:02:57,000] [pool-1-thread-12] Initializing /data/shalin/40xNA0.6-512x512.tif: 
   [testng] 02:02:57,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:02:57,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:02:57,012 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-27_02-02-57.log]
   [testng] 02:02:57,012 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10afdf7 - End of configuration.
   [testng] [2024-07-27 02:02:57,108] [pool-1-thread-11] Initializing /data/timg/LiveOne.tif: 
   [testng] 02:02:57,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:02:57,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:02:57,109 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-27_02-02-57.log]
   [testng] 02:02:57,109 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52e94a03 - End of configuration.
   [testng] [2024-07-27 02:02:57,145] [pool-1-thread-10] Initializing /data/timg/eric-three.tif: 
   [testng] 02:02:57,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:02:57,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:02:57,147 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-27_02-02-57.log]
   [testng] 02:02:57,147 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73eeeee3 - End of configuration.
   [testng] [2024-07-27 02:02:57,225] [pool-1-thread-9] Initializing /data/timg/eric-three-projection.tif: 
   [testng] 02:02:57,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:02:57,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:02:57,226 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-27_02-02-57.log]
   [testng] 02:02:57,226 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f374ff8 - End of configuration.
   [testng] [2024-07-27 02:02:57,289] [pool-1-thread-8] Initializing /data/timg/eric-one-3d.tif: 
   [testng] 02:02:57,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:02:57,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:02:57,290 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-27_02-02-57.log]
   [testng] 02:02:57,291 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c941a53 - End of configuration.
   [testng] [2024-07-27 02:02:57,422] [pool-1-thread-7] Initializing /data/jae/BrdU.1c-1.z.Live1-25-2005_11-58-40_AM.tif: 
   [testng] 02:02:57,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:02:57,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:02:57,423 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-27_02-02-57.log]
   [testng] 02:02:57,424 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e936439 - End of configuration.
   [testng] [2024-07-27 02:02:57,486] [pool-1-thread-6] Initializing /data/brian/DBTRG 2X 1a-1.tif: 
   [testng] 02:02:57,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:02:57,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:02:57,487 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-27_02-02-57.log]
   [testng] 02:02:57,488 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bc96c7d - End of configuration.
   [testng] [2024-07-27 02:02:57,625] [pool-1-thread-5] Initializing /data/aaron/olympus_fv500.tif: 
   [testng] 02:02:57,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:02:57,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:02:57,626 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-27_02-02-57.log]
   [testng] 02:02:57,627 |-INFO in ch.qos.logback.core.sift.SiftProcessor@426602e - End of configuration.
   [testng] [2024-07-27 02:02:57,798] [pool-1-thread-4] Initializing /data/brian/DBTRG 2X 1a-1_DSP.TIF: 
   [testng] 02:02:57,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:02:57,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:02:57,799 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-27_02-02-57.log]
   [testng] 02:02:57,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30e1e4a4 - End of configuration.
   [testng] [2024-07-27 02:02:57,865] [pool-1-thread-3] Initializing /data/timg/eric-one.tif: 
   [testng] 02:02:57,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:02:57,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:02:57,866 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-27_02-02-57.log]
   [testng] 02:02:57,867 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f484c66 - End of configuration.
   [testng] [2024-07-27 02:02:57,986] [pool-1-thread-2] Initializing /data/timg/LiveTwo.tif: 
   [testng] 02:02:57,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:02:57,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:02:57,987 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-27_02-02-57.log]
   [testng] 02:02:57,988 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70b9c9a7 - End of configuration.
   [testng] [2024-07-27 02:03:00,617] [pool-1-thread-11] Initializing /data/timg/E1-v2(11 som).tif: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 689, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 18 seconds
Finished: SUCCESS