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Started by upstream project "BIOFORMATS-test-repo" build number 134 originally caused by: Started by upstream project "Trigger" build number 154 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins17852851653283680394.sh + '[' psd = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_21098_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 02:19:18,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:19:18,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:19:18,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:19:18,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:19:18,086 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:19:18,087 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:19:18,087 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:19:18,088 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:19:18,089 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@41a0aa7d - End of configuration. [testng] 02:19:18,090 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6574a52c - Registering current configuration as safe fallback point [testng] 02:19:18,091 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c1a5b54 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 454 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-27 02:19:18,111] [main] java.version = 11.0.16 [testng] 02:19:18,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:19:18,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:18,192 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-27_02-19-18.log] [testng] 02:19:18,194 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-07-27 02:19:18,196] [main] testng.directory = /data [testng] [2024-07-27 02:19:18,196] [main] testng.configDirectory = /config [testng] [2024-07-27 02:19:18,214] [main] testng.multiplier = 1.0 [testng] [2024-07-27 02:19:18,216] [main] testng.in-memory = false [testng] [2024-07-27 02:19:18,217] [main] testng.allow-missing = false [testng] [2024-07-27 02:19:18,217] [main] user.language = en [testng] [2024-07-27 02:19:18,217] [main] user.country = ${user.country} [testng] [2024-07-27 02:19:18,217] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-27 02:19:18,895] [main] ---------------------------------------- [testng] [2024-07-27 02:19:18,896] [main] Total files: 18 [testng] [2024-07-27 02:19:18,896] [main] Scan time: 0.678 s (37 ms/file) [testng] [2024-07-27 02:19:18,896] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-27 02:19:20,666] [pool-1-thread-1] Initializing /data/qa-4117/caspase gel-1.psd: [testng] 02:19:20,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:19:20,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:20,671 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-27_02-19-20.log] [testng] 02:19:20,672 |-INFO in ch.qos.logback.core.sift.SiftProcessor@771a0411 - End of configuration. [testng] [2024-07-27 02:19:20,738] [pool-1-thread-12] Initializing /data/misc/glossy_buttons.psd: [testng] 02:19:20,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:19:20,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:20,749 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-27_02-19-20.log] [testng] 02:19:20,750 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ba6bd9b - End of configuration. [testng] [2024-07-27 02:19:20,782] [pool-1-thread-11] Initializing /data/misc/smilie.psd: [testng] 02:19:20,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:19:20,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:20,784 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-27_02-19-20.log] [testng] 02:19:20,785 |-INFO in ch.qos.logback.core.sift.SiftProcessor@aa02857 - End of configuration. [testng] [2024-07-27 02:19:20,801] [pool-1-thread-10] Initializing /data/ascb/423.psd: [testng] 02:19:20,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:19:20,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:20,803 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-27_02-19-20.log] [testng] 02:19:20,803 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4455ff72 - End of configuration. [testng] [2024-07-27 02:19:20,895] [pool-1-thread-9] Initializing /data/ascb/thin&thick fill.2.psd: [testng] 02:19:20,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:19:20,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:20,897 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-27_02-19-20.log] [testng] 02:19:20,897 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52a8d9ca - End of configuration. [testng] [2024-07-27 02:19:20,959] [pool-1-thread-8] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] 02:19:20,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:19:20,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:20,961 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-27_02-19-20.log] [testng] 02:19:20,961 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b30aa9c - End of configuration. [testng] [2024-07-27 02:19:20,994] [pool-1-thread-7] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 02:19:20,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:19:20,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:20,996 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-27_02-19-20.log] [testng] 02:19:20,997 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a53f342 - End of configuration. [testng] [2024-07-27 02:19:21,066] [pool-1-thread-6] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 02:19:21,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:19:21,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:21,068 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-27_02-19-21.log] [testng] 02:19:21,069 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7616bded - End of configuration. [testng] [2024-07-27 02:19:21,097] [pool-1-thread-5] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 02:19:21,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:19:21,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:21,111 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-27_02-19-21.log] [testng] 02:19:21,113 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15c47c58 - End of configuration. [testng] [2024-07-27 02:19:21,163] [pool-1-thread-4] Initializing /data/cris/house.tif: [testng] 02:19:21,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:19:21,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:21,165 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-27_02-19-21.log] [testng] 02:19:21,166 |-INFO in ch.qos.logback.core.sift.SiftProcessor@aa33245 - End of configuration. [testng] [2024-07-27 02:19:21,269] [pool-1-thread-3] Initializing /data/big-images/8kx8k.psd: [testng] 02:19:21,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:19:21,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:21,273 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-27_02-19-21.log] [testng] 02:19:21,274 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32219053 - End of configuration. [testng] [2024-07-27 02:19:21,309] [pool-1-thread-2] Initializing /data/ascb/607x.psd: [testng] 02:19:21,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:19:21,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:19:21,310 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-27_02-19-21.log] [testng] 02:19:21,311 |-INFO in ch.qos.logback.core.sift.SiftProcessor@632feee0 - End of configuration. [testng] [2024-07-27 02:19:24,427] [pool-1-thread-4] Initializing /data/misc/vig_drawing_1.psd: [testng] [2024-07-27 02:19:24,919] [pool-1-thread-6] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] [2024-07-27 02:19:24,935] [pool-1-thread-11] Initializing /data/misc/glossy_orbs.psd: [testng] [2024-07-27 02:19:24,953] [pool-1-thread-12] Initializing /data/misc/venus_composite_8bit.psd: [testng] [2024-07-27 02:19:25,463] [pool-1-thread-8] Initializing /data/simon/colour_separated_image.psd: [testng] [2024-07-27 02:19:25,487] [pool-1-thread-5] Initializing /data/misc/venus_composite.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 40 seconds Finished: SUCCESS