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Started by upstream project "BIOFORMATS-test-repo" build number 135
originally caused by:
 Started by upstream project "Trigger" build number 155
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins18023012726133537846.sh
+ '[' afi = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_21210_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 01:48:13,874 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:48:13,876 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
   [testng] 01:48:13,876 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:48:13,877 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:48:13,877 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:48:13,877 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:48:13,878 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:48:13,878 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:48:13,878 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:48:13,879 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:48:13,879 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:48:13,879 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:48:14,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:48:14,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:48:14,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:48:14,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:48:14,106 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:48:14,107 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:48:14,107 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:48:14,107 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:48:14,107 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
   [testng] 01:48:14,108 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
   [testng] 01:48:14,108 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 230 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-07-28 01:48:14,118] [main] java.version = 17.0.2
   [testng] 01:48:14,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:48:14,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:48:14,182 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-28_01-48-14.log]
   [testng] 01:48:14,185 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
   [testng] [2024-07-28 01:48:14,188] [main] testng.directory = /data
   [testng] [2024-07-28 01:48:14,189] [main] testng.configDirectory = /config
   [testng] [2024-07-28 01:48:14,203] [main] testng.multiplier = 1.0
   [testng] [2024-07-28 01:48:14,205] [main] testng.in-memory = false
   [testng] [2024-07-28 01:48:14,205] [main] testng.allow-missing = false
   [testng] [2024-07-28 01:48:14,205] [main] user.language = en
   [testng] [2024-07-28 01:48:14,205] [main] user.country = ${user.country}
   [testng] [2024-07-28 01:48:14,205] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-07-28 01:48:14,804] [main] ----------------------------------------
   [testng] [2024-07-28 01:48:14,805] [main] Total files: 16
   [testng] [2024-07-28 01:48:14,805] [main] Scan time: 0.599 s (37 ms/file)
   [testng] [2024-07-28 01:48:14,805] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-07-28 01:48:25,871] [pool-1-thread-1] Initializing /data/samples/5347.afi: 
   [testng] 01:48:25,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:48:25,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:48:25,873 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-28_01-48-25.log]
   [testng] 01:48:25,873 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c288c98 - End of configuration.
   [testng] [2024-07-28 01:48:25,989] [pool-1-thread-12] Initializing /data/samples/5414.afi: 
   [testng] 01:48:25,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:48:25,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:48:26,000 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-28_01-48-26.log]
   [testng] 01:48:26,001 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77fce3be - End of configuration.
   [testng] [2024-07-28 01:48:26,206] [pool-1-thread-11] Initializing /data/samples/5407.afi: 
   [testng] 01:48:26,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:48:26,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:48:26,207 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-28_01-48-26.log]
   [testng] 01:48:26,208 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55a2a1c8 - End of configuration.
   [testng] [2024-07-28 01:48:26,301] [pool-1-thread-10] Initializing /data/samples/5351.afi: 
   [testng] 01:48:26,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:48:26,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:48:26,304 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-28_01-48-26.log]
   [testng] 01:48:26,305 |-INFO in ch.qos.logback.core.sift.SiftProcessor@299832eb - End of configuration.
   [testng] [2024-07-28 01:48:26,467] [pool-1-thread-9] Initializing /data/samples/5343.afi: 
   [testng] 01:48:26,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:48:26,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:48:26,468 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-28_01-48-26.log]
   [testng] 01:48:26,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@431bd6ce - End of configuration.
   [testng] [2024-07-28 01:48:26,580] [pool-1-thread-8] Initializing /data/samples/5383.afi: 
   [testng] 01:48:26,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:48:26,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:48:26,581 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-28_01-48-26.log]
   [testng] 01:48:26,582 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f50db82 - End of configuration.
   [testng] [2024-07-28 01:48:26,680] [pool-1-thread-7] Initializing /data/samples/5440.afi: 
   [testng] 01:48:26,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:48:26,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:48:26,681 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-28_01-48-26.log]
   [testng] 01:48:26,681 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7297af8f - End of configuration.
   [testng] [2024-07-28 01:48:26,785] [pool-1-thread-6] Initializing /data/samples/5358.afi: 
   [testng] 01:48:26,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:48:26,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:48:26,786 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-28_01-48-26.log]
   [testng] 01:48:26,787 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c3959aa - End of configuration.
   [testng] [2024-07-28 01:48:26,889] [pool-1-thread-5] Initializing /data/samples/5365.afi: 
   [testng] 01:48:26,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:48:26,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:48:26,892 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-28_01-48-26.log]
   [testng] 01:48:26,892 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e7498d - End of configuration.
   [testng] [2024-07-28 01:48:27,024] [pool-1-thread-4] Initializing /data/samples/5446.afi: 
   [testng] 01:48:27,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:48:27,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:48:27,025 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-28_01-48-27.log]
   [testng] 01:48:27,026 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a506c95 - End of configuration.
   [testng] [2024-07-28 01:48:27,142] [pool-1-thread-3] Initializing /data/samples/5371.afi: 
   [testng] 01:48:27,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:48:27,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:48:27,143 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-28_01-48-27.log]
   [testng] 01:48:27,143 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6656d1f1 - End of configuration.
   [testng] [2024-07-28 01:48:27,282] [pool-1-thread-2] Initializing /data/samples/5387.afi: 
   [testng] 01:48:27,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:48:27,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:48:27,284 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-28_01-48-27.log]
   [testng] 01:48:27,285 |-INFO in ch.qos.logback.core.sift.SiftProcessor@166a5f9b - End of configuration.
   [testng] [2024-07-28 01:49:26,488] [pool-1-thread-6] Initializing /data/samples/5306.afi: 
   [testng] [2024-07-28 01:49:28,177] [pool-1-thread-4] Initializing /data/samples/5400.afi: 
   [testng] [2024-07-28 01:49:29,575] [pool-1-thread-5] Initializing /data/samples/5339.afi: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 795, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 2 minutes 23 seconds
Finished: SUCCESS