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Started by upstream project "BIOFORMATS-test-repo" build number 136 originally caused by: Started by upstream project "Trigger" build number 156 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins7217540429995206911.sh + '[' mrw = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_21388_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:07:44,199 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:07:44,202 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:07:44,202 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:07:44,203 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:07:44,204 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:07:44,204 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:07:44,204 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:07:44,204 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:07:44,205 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:07:44,205 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:07:44,205 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:07:44,206 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:07:44,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:07:44,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:07:44,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:07:44,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:07:44,492 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:07:44,492 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:07:44,492 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:07:44,493 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:07:44,493 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:07:44,494 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:07:44,494 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 289 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-29 02:07:44,504] [main] java.version = 1.8.0_342 [testng] 02:07:44,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:07:44,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:44,556 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-29_02-07-44.log] [testng] 02:07:44,558 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-29 02:07:44,560] [main] testng.directory = /data [testng] [2024-07-29 02:07:44,561] [main] testng.configDirectory = /config [testng] [2024-07-29 02:07:44,574] [main] testng.multiplier = 1.0 [testng] [2024-07-29 02:07:44,574] [main] testng.in-memory = false [testng] [2024-07-29 02:07:44,575] [main] testng.allow-missing = false [testng] [2024-07-29 02:07:44,575] [main] user.language = fr [testng] [2024-07-29 02:07:44,575] [main] user.country = FR [testng] [2024-07-29 02:07:44,575] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-29 02:07:45,008] [main] ---------------------------------------- [testng] [2024-07-29 02:07:45,008] [main] Total files: 19 [testng] [2024-07-29 02:07:45,009] [main] Scan time: 0.433 s (22 ms/file) [testng] [2024-07-29 02:07:45,009] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 19 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-29 02:07:46,444] [pool-1-thread-1] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw: [testng] 02:07:46,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:07:46,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:46,445 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-29_02-07-46.log] [testng] 02:07:46,446 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a784d65 - End of configuration. [testng] [2024-07-29 02:07:46,478] [pool-1-thread-12] Initializing /data/samples/05-Aug-21_duperele_0353.mrw: [testng] 02:07:46,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:07:46,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:46,479 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-29_02-07-46.log] [testng] 02:07:46,480 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64c15fbe - End of configuration. [testng] [2024-07-29 02:07:46,551] [pool-1-thread-11] Initializing /data/samples/05-Sep-07_nyc_0531.mrw: [testng] 02:07:46,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:07:46,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:46,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-29_02-07-46.log] [testng] 02:07:46,554 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61661015 - End of configuration. [testng] [2024-07-29 02:07:46,615] [pool-1-thread-10] Initializing /data/samples/100R PICT0001.MRW: [testng] 02:07:46,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:07:46,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:46,617 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-29_02-07-46.log] [testng] 02:07:46,618 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47a6a28f - End of configuration. [testng] [2024-07-29 02:07:46,662] [pool-1-thread-9] Initializing /data/samples/05-Sep-22_statua_0800.mrw: [testng] 02:07:46,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:07:46,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:46,664 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-29_02-07-46.log] [testng] 02:07:46,665 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c9625fc - End of configuration. [testng] [2024-07-29 02:07:46,713] [pool-1-thread-8] Initializing /data/samples/200R PICT0002.MRW: [testng] 02:07:46,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:07:46,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:46,715 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-29_02-07-46.log] [testng] 02:07:46,715 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25c92fa2 - End of configuration. [testng] [2024-07-29 02:07:46,904] [pool-1-thread-7] Initializing /data/samples/1600R PICT0005.MRW: [testng] 02:07:46,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:07:46,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:46,906 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-29_02-07-46.log] [testng] 02:07:46,907 |-INFO in ch.qos.logback.core.sift.SiftProcessor@109db1f7 - End of configuration. [testng] [2024-07-29 02:07:46,941] [pool-1-thread-6] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw: [testng] 02:07:46,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:07:46,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:46,943 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-29_02-07-46.log] [testng] 02:07:46,944 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f2c7139 - End of configuration. [testng] [2024-07-29 02:07:46,972] [pool-1-thread-5] Initializing /data/samples/05-Sep-14_sigma_0698.mrw: [testng] 02:07:46,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:07:46,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:46,974 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-29_02-07-46.log] [testng] 02:07:46,975 |-INFO in ch.qos.logback.core.sift.SiftProcessor@560badc - End of configuration. [testng] [2024-07-29 02:07:47,008] [pool-1-thread-4] Initializing /data/samples/400R PICT0003.MRW: [testng] 02:07:47,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:07:47,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:47,010 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-29_02-07-47.log] [testng] 02:07:47,011 |-INFO in ch.qos.logback.core.sift.SiftProcessor@353f44fd - End of configuration. [testng] [2024-07-29 02:07:47,056] [pool-1-thread-3] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw: [testng] 02:07:47,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:07:47,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:47,059 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-29_02-07-47.log] [testng] 02:07:47,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@211e6417 - End of configuration. [testng] [2024-07-29 02:07:47,467] [pool-1-thread-2] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw: [testng] 02:07:47,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:07:47,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:47,470 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-29_02-07-47.log] [testng] 02:07:47,472 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a473ed6 - End of configuration. [testng] [2024-07-29 02:07:57,197] [pool-1-thread-10] Initializing /data/samples/05-Sep-22_statua_0818.mrw: [testng] [2024-07-29 02:07:57,218] [pool-1-thread-9] Initializing /data/samples/800R PICT0010.MRW: [testng] [2024-07-29 02:07:57,234] [pool-1-thread-3] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw: [testng] [2024-07-29 02:07:57,257] [pool-1-thread-1] Initializing /data/samples/05-Sep-03_duperele_0472.mrw: [testng] [2024-07-29 02:07:57,281] [pool-1-thread-12] Initializing /data/samples/05-Sep-22_statua_0837.mrw: [testng] [2024-07-29 02:07:57,299] [pool-1-thread-5] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw: [testng] [2024-07-29 02:07:57,318] [pool-1-thread-4] Initializing /data/samples/3200R PICT0006.MRW: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1007, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 seconds Finished: SUCCESS