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Started by upstream project "BIOFORMATS-test-repo" build number 18 originally caused by: Started by upstream project "Trigger" build number 21 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins3791484964178167282.sh + '[' pict = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_2155_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:29:01,099 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:29:01,100 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 00:29:01,100 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:29:01,101 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:29:01,102 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:29:01,103 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:29:01,103 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:29:01,103 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:29:01,104 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:29:01,106 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:29:01,106 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:29:01,107 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:29:01,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:29:01,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:29:01,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:29:01,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:29:01,413 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:29:01,414 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:29:01,414 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:29:01,415 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:29:01,415 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 00:29:01,416 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 00:29:01,416 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 312 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-31 00:29:01,437] [main] java.version = 17.0.2 [testng] 00:29:01,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:29:01,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:01,522 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-31_00-29-01.log] [testng] 00:29:01,524 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-03-31 00:29:01,527] [main] testng.directory = /data [testng] [2024-03-31 00:29:01,528] [main] testng.configDirectory = /config [testng] [2024-03-31 00:29:01,542] [main] testng.multiplier = 1.0 [testng] [2024-03-31 00:29:01,544] [main] testng.in-memory = false [testng] [2024-03-31 00:29:01,544] [main] testng.allow-missing = false [testng] [2024-03-31 00:29:01,544] [main] user.language = en [testng] [2024-03-31 00:29:01,544] [main] user.country = ${user.country} [testng] [2024-03-31 00:29:01,545] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-03-31 00:29:02,001] [main] ---------------------------------------- [testng] [2024-03-31 00:29:02,001] [main] Total files: 25 [testng] [2024-03-31 00:29:02,002] [main] Scan time: 0.456 s (18 ms/file) [testng] [2024-03-31 00:29:02,002] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-31 00:29:04,361] [pool-1-thread-1] Initializing /data/wayne/PotatoMeristem.pict: [testng] 00:29:04,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:29:04,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:04,364 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-31_00-29-04.log] [testng] 00:29:04,365 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e061947 - End of configuration. [testng] [2024-03-31 00:29:04,496] [pool-1-thread-12] Initializing /data/misc/planet.pict: [testng] 00:29:04,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:29:04,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:04,504 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-31_00-29-04.log] [testng] 00:29:04,505 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d51cb2e - End of configuration. [testng] [2024-03-31 00:29:04,546] [pool-1-thread-11] Initializing /data/jqd/32bit.pict: [testng] 00:29:04,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:29:04,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:04,547 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-31_00-29-04.log] [testng] 00:29:04,548 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d67eb11 - End of configuration. [testng] [2024-03-31 00:29:04,595] [pool-1-thread-10] Initializing /data/brian/images/RED.PCT: [testng] 00:29:04,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:29:04,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:04,597 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-31_00-29-04.log] [testng] 00:29:04,597 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69b41ea6 - End of configuration. [testng] [2024-03-31 00:29:04,630] [pool-1-thread-9] Initializing /data/misc/planet.png: [testng] 00:29:04,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:29:04,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:04,631 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-31_00-29-04.log] [testng] 00:29:04,632 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1df1b2e2 - End of configuration. [testng] [2024-03-31 00:29:04,641] [pool-1-thread-8] Initializing /data/jqd/mireSixteen.pict: [testng] 00:29:04,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:29:04,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:04,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-31_00-29-04.log] [testng] 00:29:04,643 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46126742 - End of configuration. [testng] [2024-03-31 00:29:04,656] [pool-1-thread-7] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 00:29:04,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:29:04,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:04,658 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-31_00-29-04.log] [testng] 00:29:04,658 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39dbc034 - End of configuration. [testng] [2024-03-31 00:29:04,704] [pool-1-thread-6] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] 00:29:04,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:29:04,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:04,705 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-31_00-29-04.log] [testng] 00:29:04,706 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bbbb7ef - End of configuration. [testng] [2024-03-31 00:29:04,719] [pool-1-thread-5] Initializing /data/brian/images/FLAG_RGB.pct: [testng] 00:29:04,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:29:04,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:04,720 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-31_00-29-04.log] [testng] 00:29:04,720 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4eaef7c8 - End of configuration. [testng] [2024-03-31 00:29:04,727] [pool-1-thread-4] Initializing /data/brian/images/MARBLES_B32.pct: [testng] 00:29:04,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:29:04,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:04,728 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-31_00-29-04.log] [testng] 00:29:04,728 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5331fd25 - End of configuration. [testng] [2024-03-31 00:29:04,900] [pool-1-thread-3] Initializing /data/brian/images/FLAG_B32.pct: [testng] 00:29:04,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:29:04,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:04,901 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-31_00-29-04.log] [testng] 00:29:04,901 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b2968db - End of configuration. [testng] [2024-03-31 00:29:04,918] [pool-1-thread-2] Initializing /data/misc/planet2.pict: [testng] 00:29:04,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:29:04,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:04,920 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-31_00-29-04.log] [testng] 00:29:04,920 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69d1e59 - End of configuration. [testng] [2024-03-31 00:29:06,360] [pool-1-thread-5] Initializing /data/jqd/sixteenBit.pict: [testng] [2024-03-31 00:29:06,370] [pool-1-thread-3] Initializing /data/brian/images/GRN.PCT: [testng] [2024-03-31 00:29:06,390] [pool-1-thread-8] Initializing /data/brian/images/WHT.PCT: [testng] [2024-03-31 00:29:06,442] [pool-1-thread-6] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-03-31 00:29:06,568] [pool-1-thread-9] Initializing /data/brian/images/VENUS.pct: [testng] [2024-03-31 00:29:06,814] [pool-1-thread-10] Initializing /data/misc/swlogo.pict: [testng] [2024-03-31 00:29:06,828] [pool-1-thread-12] Initializing /data/brian/images/BLU.PCT: [testng] [2024-03-31 00:29:06,842] [pool-1-thread-2] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] [2024-03-31 00:29:07,147] [pool-1-thread-1] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2024-03-31 00:29:07,176] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-03-31 00:29:07,342] [pool-1-thread-5] Initializing /data/brian/images/BLK.PCT: [testng] [2024-03-31 00:29:07,360] [pool-1-thread-6] Initializing /data/brian/images/YEL.PCT: [testng] [2024-03-31 00:29:07,503] [pool-1-thread-7] Initializing /data/jqd/mire32.pict: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 13 seconds Finished: SUCCESS