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Started by upstream project "BIOFORMATS-test-repo" build number 2 originally caused by: Started by upstream project "Trigger" build number 3 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins7737773346853737952.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_219_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:07:48,518 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:07:48,520 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:07:48,520 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:07:48,521 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:07:48,521 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:07:48,521 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:07:48,522 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:07:48,522 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:07:48,522 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:07:48,523 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:07:48,523 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:07:48,523 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:07:48,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:07:48,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:07:48,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:07:48,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:07:48,803 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:07:48,803 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:07:48,803 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:07:48,804 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:07:48,804 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:07:48,805 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:07:48,805 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 283 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-15 01:07:48,816] [main] java.version = 1.8.0_342 [testng] 01:07:48,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:07:48,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:07:48,867 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-15_01-07-48.log] [testng] 01:07:48,868 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-03-15 01:07:48,871] [main] testng.directory = /data [testng] [2024-03-15 01:07:48,871] [main] testng.configDirectory = /config [testng] [2024-03-15 01:07:48,885] [main] testng.multiplier = 1.0 [testng] [2024-03-15 01:07:48,885] [main] testng.in-memory = false [testng] [2024-03-15 01:07:48,885] [main] testng.allow-missing = false [testng] [2024-03-15 01:07:48,885] [main] user.language = en [testng] [2024-03-15 01:07:48,885] [main] user.country = ${user.country} [testng] [2024-03-15 01:07:48,885] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-03-15 01:15:30,090] [main] ---------------------------------------- [testng] [2024-03-15 01:15:30,090] [main] Total files: 7329 [testng] [2024-03-15 01:15:30,091] [main] Scan time: 461.205 s (62 ms/file) [testng] [2024-03-15 01:15:30,091] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-15 01:21:29,315] [pool-1-thread-1] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] 01:21:29,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:21:29,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:29,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-15_01-21-29.log] [testng] 01:21:29,317 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47b9903d - End of configuration. [testng] [2024-03-15 01:21:29,984] [pool-1-thread-12] Initializing /data/samples/zserSixteen.stk: [testng] 01:21:29,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:21:29,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:29,985 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-15_01-21-29.log] [testng] 01:21:29,986 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ad4b54a - End of configuration. [testng] [2024-03-15 01:21:30,497] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] 01:21:30,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:21:30,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:30,498 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-15_01-21-30.log] [testng] 01:21:30,498 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17baa314 - End of configuration. [testng] [2024-03-15 01:21:31,325] [pool-1-thread-10] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] 01:21:31,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:21:31,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:31,326 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-15_01-21-31.log] [testng] 01:21:31,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11351872 - End of configuration. [testng] [2024-03-15 01:21:31,867] [pool-1-thread-9] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] 01:21:31,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:21:31,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:31,868 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-15_01-21-31.log] [testng] 01:21:31,869 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73ef5da7 - End of configuration. [testng] [2024-03-15 01:21:34,123] [pool-1-thread-8] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] 01:21:34,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:21:34,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:34,124 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-15_01-21-34.log] [testng] 01:21:34,124 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c9d1597 - End of configuration. [testng] [2024-03-15 01:21:34,592] [pool-1-thread-7] Initializing /data/grant/XYZ_Image.STK: [testng] 01:21:34,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:21:34,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:34,593 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-15_01-21-34.log] [testng] 01:21:34,593 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dc4d851 - End of configuration. [testng] [2024-03-15 01:21:35,011] [pool-1-thread-6] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] 01:21:35,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:21:35,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:35,012 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-15_01-21-35.log] [testng] 01:21:35,013 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3506652e - End of configuration. [testng] [2024-03-15 01:21:35,618] [pool-1-thread-5] Initializing /data/ascb/C1 Stack.stk: [testng] 01:21:35,618 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:21:35,618 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:35,619 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-15_01-21-35.log] [testng] 01:21:35,619 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ff9173 - End of configuration. [testng] [2024-03-15 01:21:36,165] [pool-1-thread-4] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] 01:21:36,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:21:36,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:36,166 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-15_01-21-36.log] [testng] 01:21:36,167 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14608433 - End of configuration. [testng] [2024-03-15 01:21:36,919] [pool-1-thread-3] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] 01:21:36,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:21:36,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:36,920 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-15_01-21-36.log] [testng] 01:21:36,920 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34665b6f - End of configuration. [testng] [2024-03-15 01:21:38,150] [pool-1-thread-2] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] 01:21:38,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:21:38,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:38,150 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-15_01-21-38.log] [testng] 01:21:38,151 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b828e72 - End of configuration. [testng] [2024-03-15 01:21:43,625] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-03-15 01:21:46,923] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-03-15 01:21:47,597] [pool-1-thread-5] Initializing /data/josh/2101to600b.stk: [testng] [2024-03-15 01:21:52,074] [pool-1-thread-4] Initializing /data/samples/10xcalib.stk: [testng] [2024-03-15 01:21:52,538] [pool-1-thread-11] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-03-15 01:21:56,674] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-03-15 01:21:57,331] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-03-15 01:21:58,377] [pool-1-thread-4] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-03-15 01:21:58,807] [pool-1-thread-6] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-03-15 01:21:59,892] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-03-15 01:22:01,371] [pool-1-thread-1] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-03-15 01:22:03,500] [pool-1-thread-4] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-03-15 01:22:04,161] [pool-1-thread-7] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-03-15 01:22:05,097] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-03-15 01:22:05,916] [pool-1-thread-10] Used files list does not include base file [testng] [2024-03-15 01:22:07,637] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-03-15 01:22:08,762] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-03-15 01:22:09,527] [pool-1-thread-2] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-03-15 01:22:17,170] [pool-1-thread-7] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-03-15 01:22:18,159] [pool-1-thread-6] Initializing /data/steve/Experiment2.tif: [testng] [2024-03-15 01:22:19,452] [pool-1-thread-12] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-03-15 01:22:21,159] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-03-15 01:22:21,799] [pool-1-thread-11] Used files list does not include base file [testng] [2024-03-15 01:22:22,200] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-03-15 01:22:24,018] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-03-15 01:22:24,805] [pool-1-thread-12] Used files list does not include base file [testng] [2024-03-15 01:22:24,822] [pool-1-thread-6] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-03-15 01:22:27,950] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-03-15 01:22:28,523] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-03-15 01:22:31,539] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-03-15 01:22:32,511] [pool-1-thread-5] Used files list does not include base file [testng] [2024-03-15 01:22:32,512] [pool-1-thread-6] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-03-15 01:22:33,553] [pool-1-thread-12] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-03-15 01:22:34,276] [pool-1-thread-7] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-03-15 01:22:37,285] [pool-1-thread-1] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-03-15 01:22:38,347] [pool-1-thread-12] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2024-03-15 01:22:39,184] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-03-15 01:22:39,279] [pool-1-thread-4] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-03-15 01:22:41,412] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-03-15 01:22:42,127] [pool-1-thread-10] Used files list does not include base file [testng] [2024-03-15 01:22:42,970] [pool-1-thread-6] Initializing 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-03-15 01:23:06,969] [pool-1-thread-11] Initializing /data/josh/2101to800.stk: [testng] [2024-03-15 01:23:09,748] [pool-1-thread-3] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-03-15 01:23:10,828] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-03-15 01:23:12,943] [pool-1-thread-5] Initializing /data/jerome/deconv.STK: [testng] [2024-03-15 01:23:13,728] [pool-1-thread-10] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-03-15 01:23:16,741] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-03-15 01:23:18,194] [pool-1-thread-3] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-03-15 01:23:19,000] [pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-03-15 01:23:23,446] [pool-1-thread-5] Initializing /data/david/tl4.tif: [testng] [2024-03-15 01:23:26,164] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-15 01:23:26,955] [pool-1-thread-1] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-03-15 01:23:29,818] [pool-1-thread-7] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-03-15 01:23:33,229] [pool-1-thread-11] Initializing /data/alex/Selected FITC.stk: [testng] [2024-03-15 01:23:34,842] [pool-1-thread-8] Initializing /data/josh/2101to400astk.stk: [testng] [2024-03-15 01:23:44,046] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-15 01:23:44,797] [pool-1-thread-5] Initializing /data/steve/Experiment2.stk: [testng] [2024-03-15 01:23:46,424] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-15 01:23:49,014] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-15 01:23:50,588] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-03-15 01:23:51,185] [pool-1-thread-5] Used files list does not include base file [testng] [2024-03-15 01:23:51,200] [pool-1-thread-11] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-03-15 01:24:00,029] [pool-1-thread-5] Initializing /data/jae/RGB_s34.tif: [testng] [2024-03-15 01:24:01,028] [pool-1-thread-12] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-03-15 01:24:03,895] [pool-1-thread-10] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-03-15 01:24:05,047] [pool-1-thread-3] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-03-15 01:24:06,907] [pool-1-thread-3] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-03-15 01:24:11,678] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-03-15 01:24:12,424] [pool-1-thread-1] Used files list does not include base file [testng] [2024-03-15 01:24:12,425] [pool-1-thread-10] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-03-15 01:24:13,119] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-15 01:24:17,023] [pool-1-thread-10] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-03-15 01:24:23,731] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-03-15 01:24:24,503] [pool-1-thread-11] Used files list does not include base file [testng] [2024-03-15 01:24:24,518] [pool-1-thread-5] Initializing 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01:24:55,400] [pool-1-thread-5] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-03-15 01:24:56,612] [pool-1-thread-11] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-03-15 01:24:59,339] [pool-1-thread-6] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-03-15 01:24:59,962] [pool-1-thread-5] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-03-15 01:25:06,466] [pool-1-thread-6] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-03-15 01:25:07,095] [pool-1-thread-5] Initializing /data/samples/diatoms3d.stk: [testng] [2024-03-15 01:25:09,952] [pool-1-thread-5] Initializing /data/qa-16915/m-02.tif: [testng] [2024-03-15 01:25:13,063] [pool-1-thread-11] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-03-15 01:25:16,455] [pool-1-thread-5] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-03-15 01:25:17,255] [pool-1-thread-6] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-03-15 01:25:23,362] [pool-1-thread-11] Initializing /data/qa-16915/m-04.tif: [testng] [2024-03-15 01:25:29,037] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-03-15 01:25:29,682] [pool-1-thread-11] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-03-15 01:25:32,215] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-15 01:25:34,818] [pool-1-thread-5] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-03-15 01:25:35,601] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-03-15 01:25:40,052] [pool-1-thread-11] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-03-15 01:25:40,848] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-03-15 01:25:44,116] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-03-15 01:25:48,719] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-03-15 01:25:54,524] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-03-15 01:25:55,347] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-03-15 01:25:58,325] [pool-1-thread-11] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-03-15 01:26:00,270] [pool-1-thread-10] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-03-15 01:26:01,133] [pool-1-thread-1] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-03-15 01:26:03,983] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] 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01:26:58,203] [pool-1-thread-3] Initializing /data/samples/10xcalib.tif: [testng] [2024-03-15 01:26:58,663] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-03-15 01:26:59,369] [pool-1-thread-1] Used files list does not include base file [testng] [2024-03-15 01:27:00,050] [pool-1-thread-5] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-03-15 01:27:00,624] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-03-15 01:27:07,894] [pool-1-thread-3] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-03-15 01:27:09,060] [pool-1-thread-10] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-03-15 01:27:09,573] [pool-1-thread-7] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-03-15 01:27:10,345] [pool-1-thread-5] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-03-15 01:27:13,932] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-03-15 01:27:14,494] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-03-15 01:27:15,260] [pool-1-thread-4] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-03-15 01:27:16,158] [pool-1-thread-11] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-03-15 01:27:18,786] [pool-1-thread-5] Initializing /data/josh/2101to600e.stk: [testng] [2024-03-15 01:27:21,976] [pool-1-thread-4] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-03-15 01:27:22,584] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-03-15 01:27:23,641] [pool-1-thread-11] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-03-15 01:27:25,213] [pool-1-thread-10] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-15 01:27:25,842] [pool-1-thread-1] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-03-15 01:27:28,676] [pool-1-thread-11] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-03-15 01:27:29,393] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-03-15 01:27:30,318] [pool-1-thread-4] Used files list does not include base file [testng] [2024-03-15 01:27:30,983] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-15 01:27:31,709] [pool-1-thread-1] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-03-15 01:27:35,328] [pool-1-thread-11] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-03-15 01:27:37,266] [pool-1-thread-1] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-03-15 01:27:39,361] [pool-1-thread-10] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-03-15 01:27:41,673] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-03-15 01:27:42,234] [pool-1-thread-1] Used files list does not include base file [testng] [2024-03-15 01:27:44,145] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-03-15 01:27:44,895] [pool-1-thread-7] Used files list does not include base file [testng] [2024-03-15 01:27:44,930] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-03-15 01:27:45,626] [pool-1-thread-5] Used files list does not include base file [testng] [2024-03-15 01:27:48,086] [pool-1-thread-11] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-03-15 01:27:49,788] [pool-1-thread-1] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-03-15 01:27:52,260] [pool-1-thread-11] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-03-15 01:27:52,815] [pool-1-thread-10] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-03-15 01:27:53,362] [pool-1-thread-8] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-03-15 01:27:54,675] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-15 01:27:56,159] [pool-1-thread-11] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-03-15 01:27:57,527] [pool-1-thread-8] Initializing /data/ascb/mt aim.tif: [testng] [2024-03-15 01:27:59,411] [pool-1-thread-1] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-03-15 01:28:16,778] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-03-15 01:28:17,363] [pool-1-thread-4] Used files list does not include base file [testng] [2024-03-15 01:28:18,715] [pool-1-thread-8] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-03-15 01:28:19,246] [pool-1-thread-11] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-03-15 01:28:20,046] [pool-1-thread-10] Initializing /data/samples/zser24.stk: [testng] [2024-03-15 01:28:20,721] [pool-1-thread-5] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-03-15 01:28:21,473] [pool-1-thread-7] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-03-15 01:28:22,836] [pool-1-thread-9] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-03-15 01:28:24,508] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-15 01:28:25,508] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-03-15 01:28:26,240] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-03-15 01:28:26,784] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-03-15 01:28:27,611] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-03-15 01:28:31,204] [pool-1-thread-7] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-03-15 01:28:55,510] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-03-15 01:28:56,152] [pool-1-thread-8] Used files list does not include base file [testng] [2024-03-15 01:28:56,166] [pool-1-thread-5] Initializing /data/thomas/t_test2001.tif: [testng] [2024-03-15 01:28:58,610] [pool-1-thread-10] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-03-15 01:28:59,220] [pool-1-thread-4] Initializing /data/grant/X.STK: [testng] [2024-03-15 01:29:00,198] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-03-15 01:29:01,023] [pool-1-thread-3] Initializing /data/qa-16915/m-01.tif: [testng] [2024-03-15 01:29:04,616] [pool-1-thread-11] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-03-15 01:29:06,091] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-03-15 01:29:08,942] [pool-1-thread-9] Initializing /data/aaron/metamorph.stk: [testng] [2024-03-15 01:29:09,556] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-03-15 01:29:10,085] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-03-15 01:29:10,637] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-15 01:29:13,131] [pool-1-thread-9] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-03-15 01:29:14,001] [pool-1-thread-6] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-03-15 01:29:15,236] [pool-1-thread-3] Initializing /data/thomas/test.tif: [testng] [2024-03-15 01:29:15,798] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-03-15 01:29:17,632] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-03-15 01:29:18,576] [pool-1-thread-6] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-03-15 01:29:19,450] [pool-1-thread-3] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-03-15 01:29:20,003] [pool-1-thread-9] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-03-15 01:29:21,795] [pool-1-thread-4] Initializing /data/qa-16887/m-01.tif: [testng] [2024-03-15 01:29:23,135] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 72 minutes 36 seconds Finished: SUCCESS