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Started by upstream project "BIOFORMATS-test-repo" build number 18 originally caused by: Started by upstream project "Trigger" build number 21 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins3209896393331264965.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_2193_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:05:13,043 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:05:13,044 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 02:05:13,044 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:05:13,045 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:05:13,045 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:05:13,046 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:05:13,046 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:05:13,046 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:05:13,047 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:05:13,047 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:05:13,047 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:05:13,048 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:05:13,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:05:13,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:05:13,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:05:13,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:05:13,287 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:05:13,287 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:05:13,287 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:05:13,288 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:05:13,288 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 02:05:13,289 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 02:05:13,289 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 242 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-31 02:05:13,298] [main] java.version = 17.0.2 [testng] 02:05:13,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:05:13,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:13,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-31_02-05-13.log] [testng] 02:05:13,345 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-03-31 02:05:13,347] [main] testng.directory = /data [testng] [2024-03-31 02:05:13,347] [main] testng.configDirectory = /config [testng] [2024-03-31 02:05:13,356] [main] testng.multiplier = 1.0 [testng] [2024-03-31 02:05:13,357] [main] testng.in-memory = false [testng] [2024-03-31 02:05:13,357] [main] testng.allow-missing = false [testng] [2024-03-31 02:05:13,357] [main] user.language = en [testng] [2024-03-31 02:05:13,357] [main] user.country = ${user.country} [testng] [2024-03-31 02:05:13,357] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-03-31 02:05:24,065] [main] ---------------------------------------- [testng] [2024-03-31 02:05:24,065] [main] Total files: 268 [testng] [2024-03-31 02:05:24,065] [main] Scan time: 10.708 s (39 ms/file) [testng] [2024-03-31 02:05:24,065] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-31 02:05:34,245] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] 02:05:34,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:05:34,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:34,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-31_02-05-34.log] [testng] 02:05:34,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36909f2b - End of configuration. [testng] [2024-03-31 02:05:34,275] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] 02:05:34,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:05:34,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:34,276 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-31_02-05-34.log] [testng] 02:05:34,277 |-INFO in ch.qos.logback.core.sift.SiftProcessor@391fff17 - End of configuration. [testng] [2024-03-31 02:05:34,301] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] 02:05:34,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:05:34,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:34,302 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-31_02-05-34.log] [testng] 02:05:34,302 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78eaf771 - End of configuration. [testng] [2024-03-31 02:05:34,325] [pool-1-thread-10] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] 02:05:34,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:05:34,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:34,326 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-31_02-05-34.log] [testng] 02:05:34,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c63c66b - End of configuration. [testng] [2024-03-31 02:05:34,335] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] 02:05:34,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:05:34,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:34,337 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-31_02-05-34.log] [testng] 02:05:34,337 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d6f31f6 - End of configuration. [testng] [2024-03-31 02:05:34,354] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] 02:05:34,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:05:34,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:34,355 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-31_02-05-34.log] [testng] 02:05:34,355 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36e936b1 - End of configuration. [testng] [2024-03-31 02:05:34,368] [pool-1-thread-7] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] 02:05:34,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:05:34,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:34,370 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-31_02-05-34.log] [testng] 02:05:34,370 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76c950a8 - End of configuration. [testng] [2024-03-31 02:05:34,446] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] 02:05:34,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:05:34,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:34,447 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-31_02-05-34.log] [testng] 02:05:34,448 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72d6d02c - End of configuration. [testng] [2024-03-31 02:05:34,463] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] 02:05:34,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:05:34,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:34,464 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-31_02-05-34.log] [testng] 02:05:34,464 |-INFO in ch.qos.logback.core.sift.SiftProcessor@772c95cb - End of configuration. [testng] [2024-03-31 02:05:34,474] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] 02:05:34,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:05:34,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:34,475 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-31_02-05-34.log] [testng] 02:05:34,476 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78a52cb7 - End of configuration. [testng] [2024-03-31 02:05:34,492] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] 02:05:34,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:05:34,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:34,493 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-31_02-05-34.log] [testng] 02:05:34,493 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74cbb06e - End of configuration. [testng] [2024-03-31 02:05:34,515] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] 02:05:34,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:05:34,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:34,517 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-31_02-05-34.log] [testng] 02:05:34,518 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ced3cd3 - End of configuration. [testng] [2024-03-31 02:05:36,505] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-03-31 02:05:36,515] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-03-31 02:05:36,566] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-03-31 02:05:36,589] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-03-31 02:05:36,641] [pool-1-thread-12] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-03-31 02:05:36,671] [pool-1-thread-6] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-03-31 02:05:36,705] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-03-31 02:05:36,744] [pool-1-thread-10] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-03-31 02:05:36,752] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-03-31 02:05:36,769] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-03-31 02:05:36,786] [pool-1-thread-3] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-03-31 02:05:37,061] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] [2024-03-31 02:05:37,231] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-03-31 02:05:37,244] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-03-31 02:05:37,345] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-03-31 02:05:37,383] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-03-31 02:05:37,501] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-03-31 02:05:37,529] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-03-31 02:05:37,552] [pool-1-thread-9] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-03-31 02:05:37,752] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-03-31 02:05:37,838] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-03-31 02:05:37,861] [pool-1-thread-6] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-03-31 02:05:37,923] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-03-31 02:05:37,960] [pool-1-thread-3] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-03-31 02:05:38,017] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-03-31 02:05:38,137] [pool-1-thread-7] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-03-31 02:05:38,178] [pool-1-thread-11] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-03-31 02:05:38,211] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-03-31 02:05:38,331] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-03-31 02:05:38,367] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-03-31 02:05:38,394] [pool-1-thread-12] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-03-31 02:05:38,431] [pool-1-thread-5] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-03-31 02:05:38,560] [pool-1-thread-1] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-03-31 02:05:38,636] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-03-31 02:05:38,698] [pool-1-thread-3] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-03-31 02:05:38,742] [pool-1-thread-4] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-03-31 02:05:38,801] [pool-1-thread-7] Initializing /data/steve/FITS/M13.fits: [testng] [2024-03-31 02:05:38,808] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-03-31 02:05:38,833] [pool-1-thread-9] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-03-31 02:05:38,856] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-03-31 02:05:38,910] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-03-31 02:05:38,933] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-03-31 02:05:38,957] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-03-31 02:05:39,057] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-03-31 02:05:39,150] [pool-1-thread-7] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-03-31 02:05:39,245] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-03-31 02:05:39,262] [pool-1-thread-6] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-03-31 02:05:39,327] [pool-1-thread-5] Initializing /data/steve/FITS/M104.fits: [testng] [2024-03-31 02:05:39,333] [pool-1-thread-9] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-03-31 02:05:39,413] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2024-03-31 02:05:39,466] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-03-31 02:05:39,495] [pool-1-thread-8] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-03-31 02:05:39,530] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-03-31 02:05:39,553] [pool-1-thread-5] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-03-31 02:05:39,641] [pool-1-thread-7] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-03-31 02:05:39,651] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-03-31 02:05:39,673] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] [2024-03-31 02:05:39,725] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-03-31 02:05:39,775] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-03-31 02:05:39,813] [pool-1-thread-10] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-03-31 02:05:39,862] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-03-31 02:05:39,936] [pool-1-thread-7] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-03-31 02:05:40,048] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-03-31 02:05:40,068] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-03-31 02:05:40,124] [pool-1-thread-12] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-03-31 02:05:40,134] [pool-1-thread-9] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-03-31 02:05:40,164] [pool-1-thread-8] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-03-31 02:05:40,226] [pool-1-thread-11] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2024-03-31 02:05:40,429] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-03-31 02:05:40,477] [pool-1-thread-10] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-03-31 02:05:40,514] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-03-31 02:05:40,591] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-03-31 02:05:40,636] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-03-31 02:05:40,692] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-03-31 02:05:40,781] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-03-31 02:05:40,800] [pool-1-thread-3] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-03-31 02:05:40,807] [pool-1-thread-9] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-03-31 02:05:40,845] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-03-31 02:05:40,886] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-03-31 02:05:40,918] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-03-31 02:05:40,949] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-03-31 02:05:41,025] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-03-31 02:05:41,065] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-03-31 02:05:41,119] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-03-31 02:05:41,131] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-03-31 02:05:41,141] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-03-31 02:05:41,181] [pool-1-thread-4] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-03-31 02:05:41,274] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-03-31 02:05:41,331] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-03-31 02:05:41,341] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-03-31 02:05:41,443] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-03-31 02:05:41,587] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-03-31 02:05:41,596] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-03-31 02:05:41,624] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-03-31 02:05:41,654] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-03-31 02:05:41,665] [pool-1-thread-5] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-03-31 02:05:41,757] [pool-1-thread-6] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-03-31 02:05:41,800] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-03-31 02:05:41,898] [pool-1-thread-2] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-03-31 02:05:41,953] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-03-31 02:05:41,981] [pool-1-thread-3] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-03-31 02:05:42,003] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-03-31 02:05:42,042] [pool-1-thread-1] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-03-31 02:05:42,118] [pool-1-thread-10] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-03-31 02:05:42,266] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-03-31 02:05:42,376] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-03-31 02:05:42,412] [pool-1-thread-8] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2024-03-31 02:05:42,454] [pool-1-thread-4] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-03-31 02:05:42,472] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-03-31 02:05:42,489] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-03-31 02:05:42,531] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-03-31 02:05:42,547] [pool-1-thread-6] Initializing /data/steve/FITS/M51.fits: [testng] [2024-03-31 02:05:42,634] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-03-31 02:05:42,643] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-03-31 02:05:42,686] [pool-1-thread-2] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-03-31 02:05:42,786] [pool-1-thread-6] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-03-31 02:05:42,857] [pool-1-thread-12] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-03-31 02:05:42,938] [pool-1-thread-11] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-03-31 02:05:42,989] [pool-1-thread-10] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-03-31 02:05:43,014] [pool-1-thread-1] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-03-31 02:05:43,041] [pool-1-thread-3] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-03-31 02:05:43,070] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-03-31 02:05:43,136] [pool-1-thread-4] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-03-31 02:05:43,176] [pool-1-thread-9] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-03-31 02:05:43,242] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-03-31 02:05:43,329] [pool-1-thread-6] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-03-31 02:05:43,442] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-03-31 02:05:43,464] [pool-1-thread-4] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-03-31 02:05:43,543] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-03-31 02:05:43,573] [pool-1-thread-7] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-03-31 02:05:43,585] [pool-1-thread-12] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-03-31 02:05:43,632] [pool-1-thread-11] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-03-31 02:05:43,698] [pool-1-thread-6] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-03-31 02:05:43,743] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-03-31 02:05:43,822] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-03-31 02:05:43,999] [pool-1-thread-9] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-03-31 02:05:44,043] [pool-1-thread-5] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-03-31 02:05:44,176] [pool-1-thread-1] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2024-03-31 02:05:44,207] [pool-1-thread-12] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-03-31 02:05:44,218] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-03-31 02:05:44,302] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-03-31 02:05:44,314] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-03-31 02:05:44,339] [pool-1-thread-10] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-03-31 02:05:44,358] [pool-1-thread-9] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-03-31 02:05:44,383] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-03-31 02:05:44,508] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-03-31 02:05:44,583] [pool-1-thread-6] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-03-31 02:05:44,589] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 36 seconds Finished: SUCCESS