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Started by upstream project "BIOFORMATS-test-repo" build number 19 originally caused by: Started by upstream project "Trigger" build number 22 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins14129367805589611134.sh + '[' mng = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_2376_merge_ci -v /uod/idr/repos/curated/mng:/data -v /uod/idr-scratch/merge-ci/curated/mng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:18:16,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:18:16,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:18:16,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:18:16,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:18:16,643 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:18:16,644 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:18:16,644 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:18:16,645 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:18:16,645 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 02:18:16,646 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 02:18:16,646 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 443 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-01 02:18:16,659] [main] java.version = 1.8.0_342 [testng] 02:18:16,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:18:16,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:16,716 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-01_02-18-16.log] [testng] 02:18:16,718 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-01 02:18:16,720] [main] testng.directory = /data [testng] [2024-04-01 02:18:16,721] [main] testng.configDirectory = /config [testng] [2024-04-01 02:18:16,736] [main] testng.multiplier = 1.0 [testng] [2024-04-01 02:18:16,736] [main] testng.in-memory = false [testng] [2024-04-01 02:18:16,736] [main] testng.allow-missing = false [testng] [2024-04-01 02:18:16,736] [main] user.language = fr [testng] [2024-04-01 02:18:16,736] [main] user.country = FR [testng] [2024-04-01 02:18:16,737] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-01 02:18:18,398] [main] ---------------------------------------- [testng] [2024-04-01 02:18:18,399] [main] Total files: 78 [testng] [2024-04-01 02:18:18,399] [main] Scan time: 1.661 s (21 ms/file) [testng] [2024-04-01 02:18:18,399] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 78 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-01 02:18:37,154] [pool-1-thread-1] Initializing /data/images/MNGPAST16a.mng: [testng] 02:18:37,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:18:37,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:37,156 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-01_02-18-37.log] [testng] 02:18:37,157 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8615f7b - End of configuration. [testng] [2024-04-01 02:18:37,227] [pool-1-thread-12] Initializing /data/images/png/MNGPAST-eightA.png: [testng] 02:18:37,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:18:37,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:37,229 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-01_02-18-37.log] [testng] 02:18:37,229 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16a5154e - End of configuration. [testng] [2024-04-01 02:18:37,235] [pool-1-thread-11] Initializing /data/images/Delta-gray16.mng: [testng] 02:18:37,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:18:37,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:37,237 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-01_02-18-37.log] [testng] 02:18:37,237 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a475035 - End of configuration. [testng] [2024-04-01 02:18:37,259] [pool-1-thread-10] Initializing /data/images/MNGTERM1.mng: [testng] 02:18:37,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:18:37,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:37,260 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-01_02-18-37.log] [testng] 02:18:37,261 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59eeac94 - End of configuration. [testng] [2024-04-01 02:18:37,278] [pool-1-thread-9] Initializing /data/images/PNGCH-CC.mng: [testng] 02:18:37,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:18:37,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:37,280 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-01_02-18-37.log] [testng] 02:18:37,280 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ac73a2 - End of configuration. [testng] [2024-04-01 02:18:37,302] [pool-1-thread-8] Initializing /data/images/MNGTERM3-5.mng: [testng] 02:18:37,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:18:37,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:37,303 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-01_02-18-37.log] [testng] 02:18:37,304 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2843b3aa - End of configuration. [testng] [2024-04-01 02:18:37,321] [pool-1-thread-7] Initializing /data/images/PNGSxxxx.mng: [testng] 02:18:37,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:18:37,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:37,324 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-01_02-18-37.log] [testng] 02:18:37,324 |-INFO in ch.qos.logback.core.sift.SiftProcessor@646fb88c - End of configuration. [testng] [2024-04-01 02:18:37,366] [pool-1-thread-6] Initializing /data/images/Waves1.mng: [testng] 02:18:37,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:18:37,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:37,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-01_02-18-37.log] [testng] 02:18:37,369 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48d73258 - End of configuration. [testng] [2024-04-01 02:18:37,379] [pool-1-thread-5] Initializing /data/images/Delta-gray2.mng: [testng] 02:18:37,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:18:37,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:37,380 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-01_02-18-37.log] [testng] 02:18:37,381 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2130c1a4 - End of configuration. [testng] [2024-04-01 02:18:37,402] [pool-1-thread-4] Initializing /data/images/scrollOne.mng: [testng] 02:18:37,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:18:37,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:37,403 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-01_02-18-37.log] [testng] 02:18:37,404 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39355df8 - End of configuration. [testng] [2024-04-01 02:18:37,415] [pool-1-thread-3] Initializing /data/images/PNGBASxx.mng: [testng] 02:18:37,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:18:37,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:37,416 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-01_02-18-37.log] [testng] 02:18:37,416 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e457c7f - End of configuration. [testng] [2024-04-01 02:18:37,466] [pool-1-thread-2] Initializing /data/images/Delta-rgb16.mng: [testng] 02:18:37,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:18:37,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:37,467 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-01_02-18-37.log] [testng] 02:18:37,468 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ab28ba7 - End of configuration. [testng] [2024-04-01 02:18:39,294] [pool-1-thread-10] Initializing /data/images/Delta-gray-a8b.mng: [testng] [2024-04-01 02:18:39,332] [pool-1-thread-6] Initializing /data/images/png/Delta-gray-aEightW.png: [testng] [2024-04-01 02:18:39,336] [pool-1-thread-8] Initializing /data/images/MNGTERM3-2.mng: [testng] [2024-04-01 02:18:39,352] [pool-1-thread-1] Initializing /data/images/Delta-gray1.mng: [testng] [2024-04-01 02:18:39,372] [pool-1-thread-2] Initializing /data/images/Delta-rgb-a16w.mng: [testng] [2024-04-01 02:18:39,407] [pool-1-thread-12] Initializing /data/images/Waves3.mng: [testng] [2024-04-01 02:18:39,420] [pool-1-thread-11] Initializing /data/images/png/MNGPAST16b.png: [testng] [2024-04-01 02:18:39,424] [pool-1-thread-4] Initializing /data/images/png/MNGPAST16a.png: [testng] [2024-04-01 02:18:39,428] [pool-1-thread-5] Initializing /data/images/MNGTERM3-3.mng: [testng] [2024-04-01 02:18:39,446] [pool-1-thread-9] Initializing /data/roger/Well D2_01.mng: [testng] [2024-04-01 02:18:42,736] [pool-1-thread-3] Initializing /data/images/png/Delta-grayEight.png: [testng] [2024-04-01 02:18:42,739] [pool-1-thread-7] Initializing /data/images/png/Delta-gray-a16b.png: [testng] [2024-04-01 02:18:43,089] [pool-1-thread-3] Initializing /data/images/scrollThree.mng: [testng] [2024-04-01 02:18:43,103] [pool-1-thread-7] Initializing /data/images/PNGCMSPx.mng: [testng] [2024-04-01 02:18:43,122] [pool-1-thread-6] Initializing /data/images/DUTCH-two.mng: [testng] [2024-04-01 02:18:43,155] [pool-1-thread-4] Initializing /data/images/png/PROM-repl.png: [testng] [2024-04-01 02:18:43,160] [pool-1-thread-11] Initializing /data/images/MNGTERM2.mng: [testng] [2024-04-01 02:18:43,274] [pool-1-thread-12] Initializing /data/roger/Well B3_01.mng: [testng] [2024-04-01 02:18:46,017] [pool-1-thread-5] Initializing /data/images/png/MNGPAST-eightB.png: [testng] [2024-04-01 02:18:46,022] [pool-1-thread-8] Initializing /data/images/png/PROM-zfil.png: [testng] [2024-04-01 02:18:46,050] [pool-1-thread-1] Initializing /data/images/Delta-gray-a8w.mng: [testng] [2024-04-01 02:18:46,152] [pool-1-thread-6] Initializing /data/images/PROM-BASN-repl.mng: [testng] [2024-04-01 02:18:46,194] [pool-1-thread-4] Initializing /data/images/png/Delta-gray-aEightB.png: [testng] [2024-04-01 02:18:46,219] [pool-1-thread-10] Initializing /data/images/png/Delta-grayOne.png: [testng] [2024-04-01 02:18:46,257] [pool-1-thread-5] Initializing /data/images/Delta-rgb-a16b.mng: [testng] [2024-04-01 02:18:46,289] [pool-1-thread-2] Initializing /data/images/MNGTERM3-4.mng: [testng] [2024-04-01 02:18:46,310] [pool-1-thread-3] Initializing /data/roger/Well C4_01.mng: [testng] [2024-04-01 02:18:49,212] [pool-1-thread-11] Initializing /data/images/png/Delta-rgb-a16w.png: [testng] [2024-04-01 02:18:49,272] [pool-1-thread-8] Initializing /data/images/PNGGxxxx.mng: [testng] [2024-04-01 02:18:49,322] [pool-1-thread-7] Initializing /data/images/Waves2.mng: [testng] [2024-04-01 02:18:49,362] [pool-1-thread-10] Initializing /data/images/png/Delta-rgb-a16b.png: [testng] [2024-04-01 02:18:49,380] [pool-1-thread-4] Initializing /data/images/I01SCRL.mng: [testng] [2024-04-01 02:18:49,440] [pool-1-thread-11] Initializing /data/images/MNGPAST_eightB.mng: [testng] [2024-04-01 02:18:49,551] [pool-1-thread-2] Initializing /data/images/australia1.mng: [testng] [2024-04-01 02:18:49,589] [pool-1-thread-1] Initializing /data/images/MNGTERM3-7.mng: [testng] [2024-04-01 02:18:49,615] [pool-1-thread-10] Initializing /data/images/PROM-BASI-zfil.mng: [testng] [2024-04-01 02:18:49,653] [pool-1-thread-6] Initializing /data/images/png/Delta-grayFour.png: [testng] [2024-04-01 02:18:49,691] [pool-1-thread-7] Initializing /data/images/Delta-gray8.mng: [testng] [2024-04-01 02:18:49,750] [pool-1-thread-4] Initializing /data/images/MNGTERM3-1.mng: [testng] [2024-04-01 02:18:49,836] [pool-1-thread-11] Initializing /data/images/home.mng: [testng] [2024-04-01 02:18:49,846] [pool-1-thread-6] Initializing /data/images/png/Delta-rgb-aEightW.png: [testng] [2024-04-01 02:18:49,849] [pool-1-thread-8] Initializing /data/images/MNGPAST_eightA.mng: [testng] [2024-04-01 02:18:49,866] [pool-1-thread-5] Initializing /data/images/png/Delta-graySixteen.png: [testng] [2024-04-01 02:18:49,936] [pool-1-thread-1] Initializing /data/images/png/Delta-rgb16.png: [testng] [2024-04-01 02:18:50,017] [pool-1-thread-2] Initializing /data/images/Delta-gray-a16w.mng: [testng] [2024-04-01 02:18:50,040] [pool-1-thread-5] Initializing /data/images/Delta-gray4.mng: [testng] [2024-04-01 02:18:50,056] [pool-1-thread-6] Initializing /data/images/MNGTERM0.mng: [testng] [2024-04-01 02:18:50,069] [pool-1-thread-7] Initializing /data/images/png/Delta-rgb-aEightB.png: [testng] [2024-04-01 02:18:50,080] [pool-1-thread-10] Initializing /data/images/PROM-BASI-repl.mng: [testng] [2024-04-01 02:18:50,105] [pool-1-thread-4] Initializing /data/images/PROM-BASN-zfil.mng: [testng] [2024-04-01 02:18:50,158] [pool-1-thread-11] Initializing /data/images/Delta-rgb-a8b.mng: [testng] [2024-04-01 02:18:50,176] [pool-1-thread-8] Initializing /data/images/png/Delta-rgbEight.png: [testng] [2024-04-01 02:18:50,178] [pool-1-thread-1] Initializing /data/images/png/Delta-gray-a16w.png: [testng] [2024-04-01 02:18:50,274] [pool-1-thread-7] Initializing /data/images/MNGPAST16b.mng: [testng] [2024-04-01 02:18:50,295] [pool-1-thread-6] Initializing /data/images/PNGFxxxx.mng: [testng] [2024-04-01 02:18:50,335] [pool-1-thread-8] Initializing /data/images/MNGTERM3-6.mng: [testng] [2024-04-01 02:18:50,355] [pool-1-thread-1] Initializing /data/images/scrollTwo.mng: [testng] [2024-04-01 02:18:50,460] [pool-1-thread-5] Initializing /data/images/buttonOne.mng: [testng] [2024-04-01 02:18:50,502] [pool-1-thread-10] Initializing /data/images/buttonTwo.mng: [testng] [2024-04-01 02:18:50,518] [pool-1-thread-4] Initializing /data/images/MNGTERM3-8.mng: [testng] [2024-04-01 02:18:50,550] [pool-1-thread-2] Initializing /data/images/Delta-gray-a16b.mng: [testng] [2024-04-01 02:18:50,597] [pool-1-thread-7] Initializing /data/images/Delta-rgbEight.mng: [testng] [2024-04-01 02:18:50,641] [pool-1-thread-11] Initializing /data/images/MNGTERM3-0.mng: [testng] [2024-04-01 02:18:50,697] [pool-1-thread-8] Initializing /data/images/Delta-rgb-a8w.mng: [testng] [2024-04-01 02:18:50,731] [pool-1-thread-6] Initializing /data/roger/Well E6_01.mng: [testng] [2024-04-01 02:18:53,725] [pool-1-thread-5] Initializing /data/images/png/Delta-grayTwo.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 4134, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 2 seconds Finished: SUCCESS