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Started by upstream project "BIOFORMATS-test-repo" build number 19 originally caused by: Started by upstream project "Trigger" build number 22 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins2533971503310544886.sh + '[' cellr = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_2418_merge_ci -v /uod/idr/repos/curated/cellr:/data -v /uod/idr-scratch/merge-ci/curated/cellr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:51:05,352 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:51:05,354 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:51:05,354 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:51:05,355 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:51:05,356 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:51:05,356 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:51:05,356 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:51:05,356 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:51:05,356 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:51:05,357 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:51:05,357 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:51:05,357 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:51:05,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:51:05,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:51:05,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:51:05,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:51:05,625 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:51:05,625 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:51:05,625 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:51:05,625 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:51:05,625 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:51:05,626 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:51:05,626 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 270 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-01 02:51:05,636] [main] java.version = 1.8.0_342 [testng] 02:51:05,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:51:05,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:51:05,688 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-01_02-51-05.log] [testng] 02:51:05,690 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-01 02:51:05,692] [main] testng.directory = /data [testng] [2024-04-01 02:51:05,692] [main] testng.configDirectory = /config [testng] [2024-04-01 02:51:05,705] [main] testng.multiplier = 1.0 [testng] [2024-04-01 02:51:05,705] [main] testng.in-memory = false [testng] [2024-04-01 02:51:05,705] [main] testng.allow-missing = false [testng] [2024-04-01 02:51:05,705] [main] user.language = fr [testng] [2024-04-01 02:51:05,705] [main] user.country = FR [testng] [2024-04-01 02:51:05,705] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-01 02:51:31,310] [main] ---------------------------------------- [testng] [2024-04-01 02:51:31,311] [main] Total files: 256 [testng] [2024-04-01 02:51:31,311] [main] Scan time: 25.604 s (100 ms/file) [testng] [2024-04-01 02:51:31,311] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 13 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-01 02:52:06,064] [pool-1-thread-1] Initializing /data/viktorie/090902/090902_d.mtb: [testng] 02:52:06,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:52:06,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:06,066 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-01_02-52-06.log] [testng] 02:52:06,068 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6186c480 - End of configuration. [testng] [2024-04-01 02:52:06,116] [pool-1-thread-12] Initializing /data/viktorie/2Channels.tif: [testng] 02:52:06,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:52:06,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:06,117 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-01_02-52-06.log] [testng] 02:52:06,118 |-INFO in ch.qos.logback.core.sift.SiftProcessor@672b3d92 - End of configuration. [testng] [2024-04-01 02:52:06,206] [pool-1-thread-11] Initializing /data/colin/08-10-09/08-10-09_d.mtb: [testng] 02:52:06,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:52:06,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:06,207 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-01_02-52-06.log] [testng] 02:52:06,208 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f10cc24 - End of configuration. [testng] [2024-04-01 02:52:10,662] [pool-1-thread-10] Initializing /data/viktorie/Structure.jpg: [testng] 02:52:10,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:52:10,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:10,664 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-01_02-52-10.log] [testng] 02:52:10,664 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b130ff - End of configuration. [testng] [2024-04-01 02:52:10,700] [pool-1-thread-9] Initializing /data/qa-6659/12-07-05/12-07-05_d.mtb: [testng] 02:52:10,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:52:10,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:10,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-01_02-52-10.log] [testng] 02:52:10,701 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a51dd5a - End of configuration. [testng] [2024-04-01 02:52:12,319] [pool-1-thread-8] Initializing /data/clare/set_27_on_d.mtb: [testng] 02:52:12,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:52:12,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:12,320 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-01_02-52-12.log] [testng] 02:52:12,321 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7af416af - End of configuration. [testng] [2024-04-01 02:52:12,923] [pool-1-thread-7] Initializing /data/qa-17107/plain/Plain_d.mtb: [testng] 02:52:12,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:52:12,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:12,924 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-01_02-52-12.log] [testng] 02:52:12,924 |-INFO in ch.qos.logback.core.sift.SiftProcessor@496aa00b - End of configuration. [testng] [2024-04-01 02:52:12,960] [pool-1-thread-6] Initializing /data/qa-17107/LifeScienceDemo/LifeScienceDemoSTAR_d.mtb: [testng] 02:52:12,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:52:12,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:12,961 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-01_02-52-12.log] [testng] 02:52:12,961 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f15de28 - End of configuration. [testng] [2024-04-01 02:52:12,992] [pool-1-thread-5] Initializing /data/qa-17107/example2/example2_d.mtb: [testng] 02:52:12,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:52:12,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:12,993 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-01_02-52-12.log] [testng] 02:52:12,993 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b260397 - End of configuration. [testng] [2024-04-01 02:52:13,040] [pool-1-thread-4] Initializing /data/qa-17107/MaterialsDemo/MaterialsDemo_d.mtb: [testng] 02:52:13,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:52:13,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:13,041 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-01_02-52-13.log] [testng] 02:52:13,042 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4195ba5d - End of configuration. [testng] [2024-04-01 02:52:13,084] [pool-1-thread-3] Initializing /data/kees/Mariaelena_d.mtb: [testng] 02:52:13,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:52:13,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:13,085 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-01_02-52-13.log] [testng] 02:52:13,086 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44c2411b - End of configuration. [testng] [2024-04-01 02:52:13,453] [pool-1-thread-2] Initializing /data/colin/07-06-21/07-06-21_d.mtb: [testng] 02:52:13,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:52:13,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:52:13,454 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-01_02-52-13.log] [testng] 02:52:13,454 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6944b3c2 - End of configuration. [testng] [2024-04-01 02:52:15,028] [pool-1-thread-12] Initializing /data/viktorie/test/test_d.mtb: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 689, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 56 seconds Finished: SUCCESS