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Started by upstream project "BIOFORMATS-test-repo" build number 20 originally caused by: Started by upstream project "Trigger" build number 23 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins1557302596049905799.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_2444_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:21:14,443 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:21:14,446 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:21:14,446 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:14,447 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:14,448 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:21:14,449 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:21:14,449 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:21:14,449 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:14,450 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:14,451 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:21:14,452 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:21:14,452 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:21:14,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:21:14,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:21:14,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:21:14,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:21:14,722 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:21:14,723 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:21:14,723 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:21:14,724 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:21:14,725 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:21:14,726 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:21:14,726 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 276 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-02 01:21:14,737] [main] java.version = 11.0.16 [testng] 01:21:14,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:21:14,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:14,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-02_01-21-14.log] [testng] 01:21:14,801 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-04-02 01:21:14,804] [main] testng.directory = /data [testng] [2024-04-02 01:21:14,804] [main] testng.configDirectory = /config [testng] [2024-04-02 01:21:14,822] [main] testng.multiplier = 1.0 [testng] [2024-04-02 01:21:14,825] [main] testng.in-memory = false [testng] [2024-04-02 01:21:14,825] [main] testng.allow-missing = false [testng] [2024-04-02 01:21:14,825] [main] user.language = en [testng] [2024-04-02 01:21:14,825] [main] user.country = ${user.country} [testng] [2024-04-02 01:21:14,825] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-04-02 01:21:29,192] [main] ---------------------------------------- [testng] [2024-04-02 01:21:29,192] [main] Total files: 4424 [testng] [2024-04-02 01:21:29,193] [main] Scan time: 14.367 s (3 ms/file) [testng] [2024-04-02 01:21:29,193] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 721 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-02 01:23:42,070] [pool-1-thread-1] Initializing /data/bene/3d-example-stack.tif: [testng] 01:23:42,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:23:42,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:42,073 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-02_01-23-42.log] [testng] 01:23:42,074 |-INFO in ch.qos.logback.core.sift.SiftProcessor@452c54 - End of configuration. [testng] [2024-04-02 01:23:42,162] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z058.tif: [testng] 01:23:42,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:23:42,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:42,162 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-02_01-23-42.log] [testng] 01:23:42,163 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65c1356b - End of configuration. [testng] [2024-04-02 01:23:42,201] [pool-1-thread-11] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-48x64.tiff: [testng] 01:23:42,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:23:42,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:42,202 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-02_01-23-42.log] [testng] 01:23:42,203 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a7e0ebc - End of configuration. [testng] [2024-04-02 01:23:42,233] [pool-1-thread-10] Initializing /data/josiah/cell-Z10.C1.tiff: [testng] 01:23:42,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:23:42,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:42,234 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-02_01-23-42.log] [testng] 01:23:42,234 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43ed7ce2 - End of configuration. [testng] [2024-04-02 01:23:42,272] [pool-1-thread-9] Initializing /data/josiah/cell-Z24.C0.tiff: [testng] 01:23:42,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:23:42,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:42,273 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-02_01-23-42.log] [testng] 01:23:42,273 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67958e3e - End of configuration. [testng] [2024-04-02 01:23:42,312] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0210.TIF: [testng] 01:23:42,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:23:42,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:42,313 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-02_01-23-42.log] [testng] 01:23:42,313 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5edd5cc - End of configuration. [testng] [2024-04-02 01:23:42,402] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C0_Z003.tif: [testng] 01:23:42,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:23:42,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:42,403 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-02_01-23-42.log] [testng] 01:23:42,403 |-INFO in ch.qos.logback.core.sift.SiftProcessor@483eb7cb - End of configuration. [testng] [2024-04-02 01:23:42,447] [pool-1-thread-6] Initializing /data/christine/Image5D_4color test stack/RGB from I5D.tif: [testng] 01:23:42,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:23:42,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:42,448 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-02_01-23-42.log] [testng] 01:23:42,448 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b06401e - End of configuration. [testng] [2024-04-02 01:23:42,531] [pool-1-thread-5] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs006.TIF: [testng] 01:23:42,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:23:42,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:42,533 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-02_01-23-42.log] [testng] 01:23:42,533 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b6e5082 - End of configuration. [testng] [2024-04-02 01:23:42,642] [pool-1-thread-4] Initializing /data/josiah/cell-Z6.C0.tiff: [testng] 01:23:42,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:23:42,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:42,643 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-02_01-23-42.log] [testng] 01:23:42,644 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1aac8539 - End of configuration. [testng] [2024-04-02 01:23:42,696] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C0_Z004.tif: [testng] 01:23:42,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:23:42,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:42,697 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-02_01-23-42.log] [testng] 01:23:42,697 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25dea042 - End of configuration. [testng] [2024-04-02 01:23:42,732] [pool-1-thread-2] Initializing /data/ascb/FND-10_PorterMitochondria_4800.tif: [testng] 01:23:42,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:23:42,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:42,733 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-02_01-23-42.log] [testng] 01:23:42,734 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1000b974 - End of configuration. [testng] [2024-04-02 01:23:47,093] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z025.tif: [testng] [2024-04-02 01:23:47,320] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z002.tif: [testng] [2024-04-02 01:23:47,341] [pool-1-thread-3] Initializing /data/josiah/cell-Z23.C1.tiff: [testng] [2024-04-02 01:23:47,365] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z048.tif: [testng] [2024-04-02 01:23:47,592] [pool-1-thread-4] Initializing /data/samples/melissa/imagej-4gb/4gb-imagej.tif: [testng] [2024-04-02 01:23:47,663] [pool-1-thread-1] Initializing /data/ascb/FND-13_PorterFranziniTransverse_4800.tif: [testng] [2024-04-02 01:23:50,367] [pool-1-thread-6] Initializing /data/alexa/test4.tif: [testng] [2024-04-02 01:23:50,394] [pool-1-thread-9] Initializing /data/brian/MFGTMP_080902150001t001B02f73d2.TIF: [testng] [2024-04-02 01:23:50,450] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z034.tif: [testng] [2024-04-02 01:23:50,510] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C1_Z011.tif: [testng] [2024-04-02 01:23:50,627] [pool-1-thread-8] Initializing /data/ascb/CYT-31_FriendOsmium_4800.tif: [testng] [2024-04-02 01:23:51,020] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C1_Z021.tif: [testng] [2024-04-02 01:23:51,491] [pool-1-thread-12] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-32x32.tiff: [testng] [2024-04-02 01:23:51,572] [pool-1-thread-7] Initializing /data/jonathan/XSEC-02.TIF: [testng] [2024-04-02 01:23:51,603] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z047.tif: [testng] [2024-04-02 01:23:51,639] [pool-1-thread-10] Initializing /data/brian/retina/retina_C1_Z054.tif: [testng] [2024-04-02 01:23:51,672] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C1_Z026.tif: [testng] [2024-04-02 01:23:51,709] [pool-1-thread-5] Initializing /data/josiah/cell-Z2.C1.tiff: [testng] [2024-04-02 01:23:52,175] [pool-1-thread-11] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs014.TIF: [testng] [2024-04-02 01:23:52,437] [pool-1-thread-9] Initializing /data/damian/21m.tiff: [testng] [2024-04-02 01:23:52,482] [pool-1-thread-12] Initializing /data/public/condensation/C4.pattern3.tif: [testng] [2024-04-02 01:23:52,605] [pool-1-thread-6] Initializing /data/julien/Chadisoukkarieh.TIF: [testng] [2024-04-02 01:23:52,686] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z038.tif: [testng] [2024-04-02 01:23:52,886] [pool-1-thread-3] Initializing /data/jonathan/Cut-1_001.tif: [testng] [2024-04-02 01:23:52,960] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z026.tif: [testng] [2024-04-02 01:23:52,984] [pool-1-thread-5] Initializing /data/public/condensation/E4.pattern5.tif: [testng] [2024-04-02 01:23:53,027] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C1_Z030.tif: [testng] [2024-04-02 01:23:53,577] [pool-1-thread-9] Initializing /data/ascb/CYT-56_HowellGolgiRibbonRaw_4800.tif: [testng] [2024-04-02 01:23:53,692] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z027.tif: [testng] [2024-04-02 01:23:53,872] [pool-1-thread-10] Initializing /data/ascb/bad/FND-19_FawcettPhillipsSuccessive_4800.tif: [testng] [2024-04-02 01:23:53,958] [pool-1-thread-7] Initializing /data/josiah/cell-Z33.C1.tiff: [testng] [2024-04-02 01:23:54,047] [pool-1-thread-6] Initializing /data/public/libtiff/cramps.tif: [testng] [2024-04-02 01:23:54,078] [pool-1-thread-4] Initializing /data/ascb/CYT-77_PasolliMouse2_4800.tif: [testng] [2024-04-02 01:23:54,214] [pool-1-thread-5] Initializing /data/brian/MFGTMP_080902150001t001B02f73d1.TIF: [testng] [2024-04-02 01:23:54,328] [pool-1-thread-11] Initializing /data/jae/25Jan10_MDCK_2R_3Dstack_60x_1.tif: [testng] [2024-04-02 01:23:54,747] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0258.TIF: [testng] [2024-04-02 01:23:54,991] [pool-1-thread-7] Initializing 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[pool-1-thread-4] Initializing /data/public/cellprofiler/fruit-fly-cells/POS002.pattern/POS002.pattern: [testng] [2024-04-02 01:24:50,034] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C0_Z028.tif: [testng] [2024-04-02 01:24:50,073] [pool-1-thread-8] Initializing /data/josiah/cell-Z25.C0.tiff: [testng] [2024-04-02 01:24:50,099] [pool-1-thread-3] Initializing /data/josiah/cell-Z35.C0.tiff: [testng] [2024-04-02 01:24:50,135] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z034.tif: [testng] [2024-04-02 01:24:50,476] [pool-1-thread-1] Initializing /data/josiah/cell-Z1.C0.tiff: [testng] [2024-04-02 01:24:50,633] [pool-1-thread-3] Initializing /data/qa-4054/NM80 Plato R) calb pul.tif: [testng] [2024-04-02 01:24:50,847] [pool-1-thread-8] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs004.TIF: [testng] [2024-04-02 01:24:50,899] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C1_Z031.tif: [testng] [2024-04-02 01:24:51,247] 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/data/samples/tiling-variants/data-layout-64x64-planar-strips_fourteen.tiff: [testng] [2024-04-02 01:25:57,994] [pool-1-thread-6] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-16x64.tiff: [testng] [2024-04-02 01:25:58,091] [pool-1-thread-3] Initializing /data/lzw/test.tif: [testng] [2024-04-02 01:25:58,224] [pool-1-thread-11] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-60.tiff: [testng] [2024-04-02 01:25:58,272] [pool-1-thread-8] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x64.tiff: [testng] [2024-04-02 01:25:58,302] [pool-1-thread-2] Initializing /data/josh/ZProjection of stack.tif: [testng] [2024-04-02 01:25:58,446] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C0_Z031.tif: [testng] [2024-04-02 01:25:58,691] [pool-1-thread-6] Initializing /data/ascb/FND-15_PorterFast_4800.tif: [testng] [2024-04-02 01:26:01,404] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C0_Z025.tif: [testng] [2024-04-02 01:26:01,432] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0228.TIF: [testng] [2024-04-02 01:26:01,477] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z031.tif: [testng] [2024-04-02 01:26:01,502] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0239.TIF: [testng] [2024-04-02 01:26:01,719] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z023.tif: [testng] [2024-04-02 01:26:01,923] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C1_Z013.tif: [testng] [2024-04-02 01:26:01,977] [pool-1-thread-3] Initializing /data/jeff/erdas_spnad83.tif: [testng] [2024-04-02 01:26:02,030] [pool-1-thread-11] Initializing /data/josiah/cell-Z7.C0.tiff: [testng] [2024-04-02 01:26:02,239] [pool-1-thread-5] Initializing /data/josh/NESb_C2_TP1.tiff: [testng] [2024-04-02 01:26:02,678] [pool-1-thread-8] Initializing /data/josiah/cell-Z18.C0.tiff: [testng] [2024-04-02 01:26:02,709] [pool-1-thread-10] Initializing /data/ascb/14346-myc-p125A.tif: [testng] [2024-04-02 01:26:02,752] [pool-1-thread-2] Initializing /data/kevino/_BF_00000.tif: [testng] [2024-04-02 01:26:02,976] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C1_Z007.tif: [testng] [2024-04-02 01:26:03,107] [pool-1-thread-3] Initializing /data/tom-kazimiers/test_noexiftool.tiff: [testng] [2024-04-02 01:26:03,295] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C0_Z034.tif: [testng] [2024-04-02 01:26:03,396] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z054.tif: [testng] [2024-04-02 01:26:03,464] [pool-1-thread-10] Initializing /data/ascb/CYT-152_Raben_Eating.tif: [testng] [2024-04-02 01:26:03,649] [pool-1-thread-3] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs010.TIF: [testng] [2024-04-02 01:26:03,692] [pool-1-thread-2] Initializing /data/imagesc-82872/WT_Uninfected_top_right.tiff: [testng] [2024-04-02 01:26:04,003] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z036.tif: [testng] [2024-04-02 01:26:04,127] [pool-1-thread-8] Initializing /data/public/condensation/A5.pattern2.tif: [testng] [2024-04-02 01:26:04,185] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C1_Z036.tif: [testng] [2024-04-02 01:26:04,315] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z018.tif: [testng] [2024-04-02 01:26:04,639] [pool-1-thread-11] Initializing /data/public/libtiff/jim___gg.tif: [testng] [2024-04-02 01:26:04,721] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z017.tif: [testng] [2024-04-02 01:26:04,753] [pool-1-thread-8] Initializing /data/misc/ms-paint.png: [testng] [2024-04-02 01:26:05,088] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C1_Z009.tif: [testng] [2024-04-02 01:26:05,142] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C1_Z015.tif: [testng] [2024-04-02 01:26:05,241] [pool-1-thread-12] Initializing /data/marc/ball48_LOCI_2_RGB_autoscale_10x.tif: [testng] [2024-04-02 01:26:05,535] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z000.tif: [testng] [2024-04-02 01:26:05,583] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z046.tif: [testng] [2024-04-02 01:26:05,700] [pool-1-thread-11] Initializing /data/ascb/bad/FND-16_FawcettPrincipal_4800.tif: [testng] [2024-04-02 01:26:05,948] [pool-1-thread-3] Initializing /data/damian/18m.tiff: [testng] [2024-04-02 01:26:05,984] [pool-1-thread-5] Initializing /data/carolyn/tumor_3.tif: [testng] [2024-04-02 01:26:06,283] [pool-1-thread-8] Initializing /data/josiah/cell-Z5.C0.tiff: [testng] [2024-04-02 01:26:06,609] [pool-1-thread-3] Initializing /data/big-images/2kx2k.tif: [testng] [2024-04-02 01:26:06,699] [pool-1-thread-8] Initializing /data/josh/NESb_C2_TP6.tiff: [testng] [2024-04-02 01:26:07,153] [pool-1-thread-12] Initializing /data/jeff/test36b.tif: [testng] [2024-04-02 01:26:07,308] [pool-1-thread-5] Initializing /data/josiah/cell-Z37.C0.tiff: [testng] [2024-04-02 01:26:07,386] [pool-1-thread-12] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x16.tiff: [testng] [2024-04-02 01:26:08,512] [pool-1-thread-12] Initializing /data/stephane/P014.tif: [testng] [2024-04-02 01:26:08,707] [pool-1-thread-5] Initializing /data/chris/GFP + Vav2 actin 3b.tif: [testng] [2024-04-02 01:26:09,024] [pool-1-thread-8] Initializing /data/curtis/itk/MG63_0_1.tif: [testng] [2024-04-02 01:26:09,863] [pool-1-thread-5] Initializing /data/curtis/test1.tiff: [testng] [2024-04-02 01:26:09,912] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z019.tif: [testng] [2024-04-02 01:26:10,209] [pool-1-thread-8] Initializing /data/josh/NESb_C2_TP5.tiff: [testng] [2024-04-02 01:26:10,953] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z005.tif: [testng] [2024-04-02 01:26:11,029] [pool-1-thread-12] Initializing /data/edward/TestDoc2.tif: [testng] [2024-04-02 01:26:11,047] [pool-1-thread-3] Initializing /data/public/condensation/C4.pattern8.tif: [testng] [2024-04-02 01:26:11,405] [pool-1-thread-5] Initializing /data/josiah/cell-Z38.C0.tiff: [testng] [2024-04-02 01:26:11,521] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C0_Z021.tif: [testng] [2024-04-02 01:26:11,680] [pool-1-thread-3] Initializing /data/martin/head.tif: [testng] [2024-04-02 01:26:12,237] [pool-1-thread-5] Initializing /data/josh/jnb1s1_raw0229.TIF: [testng] [2024-04-02 01:26:12,604] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z011.tif: [testng] [2024-04-02 01:26:12,695] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-48x48.tiff: [testng] [2024-04-02 01:26:13,016] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C1_Z023.tif: [testng] [2024-04-02 01:26:13,047] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0233.TIF: [testng] [2024-04-02 01:26:13,188] [pool-1-thread-7] Initializing /data/public/condensation/A6.pattern3.tif: [testng] [2024-04-02 01:26:13,264] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0214.TIF: [testng] [2024-04-02 01:26:13,348] [pool-1-thread-9] Initializing /data/boguslaw/Arabidopsis_large.tif: [testng] [2024-04-02 01:26:13,768] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z028.tif: [testng] [2024-04-02 01:26:13,973] [pool-1-thread-5] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-60.tiff: [testng] [2024-04-02 01:26:14,151] [pool-1-thread-8] Initializing /data/ascb/FND-26_PaladeGlycogen_4800.tif: [testng] [2024-04-02 01:26:14,232] [pool-1-thread-7] Initializing /data/andrew/wibble-tmp4.tiff: [testng] [2024-04-02 01:26:14,370] [pool-1-thread-3] Initializing /data/imagesc-50416/_Fadeh_Alonzy_OD_Lower__M5_A8_F950nmD_I022_20130424115201.tiff: [testng] [2024-04-02 01:26:14,529] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C0_Z026.tif: [testng] [2024-04-02 01:26:14,730] [pool-1-thread-7] Initializing /data/josiah/cell-Z34.C1.tiff: [testng] [2024-04-02 01:26:14,791] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0255.TIF: [testng] [2024-04-02 01:26:15,132] [pool-1-thread-5] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x48.tiff: [testng] [2024-04-02 01:26:15,267] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z047.tif: [testng] [2024-04-02 01:26:15,449] [pool-1-thread-5] Initializing /data/ascb/FND-25_PaladeGroup_4800.tif: [testng] [2024-04-02 01:26:15,588] [pool-1-thread-7] Initializing /data/ascb/CYT-93_PasolliMouse1c_4800.tif: [testng] [2024-04-02 01:26:15,692] [pool-1-thread-2] Initializing /data/josiah/cell-Z26.C1.tiff: [testng] [2024-04-02 01:26:16,141] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z003.tif: [testng] [2024-04-02 01:26:16,183] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z049.tif: [testng] [2024-04-02 01:26:16,276] [pool-1-thread-12] Initializing /data/samples/cielab/Ski_TC8-03_ROMM_lab.tif: [testng] [2024-04-02 01:26:16,322] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z042.tif: [testng] [2024-04-02 01:26:16,524] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C0_Z010.tif: [testng] [2024-04-02 01:26:16,564] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0250.TIF: [testng] [2024-04-02 01:26:16,698] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z029.tif: [testng] [2024-04-02 01:26:17,037] [pool-1-thread-3] Initializing /data/curtis/clown.tif: [testng] [2024-04-02 01:26:17,078] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x16.tiff: [testng] [2024-04-02 01:26:17,345] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z038.tif: [testng] [2024-04-02 01:26:17,375] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C0_Z036.tif: [testng] [2024-04-02 01:26:17,421] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z001.tif: [testng] [2024-04-02 01:26:17,694] [pool-1-thread-9] Initializing /data/david/100umbeads_stack.tif: [testng] [2024-04-02 01:26:17,844] [pool-1-thread-3] Initializing /data/misc/mri-stack.tif: [testng] [2024-04-02 01:26:17,956] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z060.tif: [testng] [2024-04-02 01:26:18,260] [pool-1-thread-2] Initializing /data/john/C100915-MA_AXIS_LEH_IMAGE_KIND_FLAT_ICE_3.tif: [testng] [2024-04-02 01:26:18,493] [pool-1-thread-3] Initializing /data/josiah/cell-Z16.C1.tiff: [testng] [2024-04-02 01:26:18,703] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z042.tif: [testng] [2024-04-02 01:26:18,979] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x48.tiff: [testng] [2024-04-02 01:26:19,021] [pool-1-thread-9] Initializing /data/ascb/CYT-149_Fader_Fusion.tif: [testng] [2024-04-02 01:26:19,343] [pool-1-thread-3] Initializing /data/public/condensation/A5.pattern1.tif: [testng] [2024-04-02 01:26:20,055] [pool-1-thread-2] Initializing /data/harvey/NR_Giemsa_Sag_CTb_Retina_02.tif: [testng] [2024-04-02 01:26:20,415] [pool-1-thread-3] Initializing /data/wayne/Rockies-rgb.tif: [testng] [2024-04-02 01:26:21,480] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C1_Z002.tif: [testng] [2024-04-02 01:26:21,922] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0207.TIF: [testng] [2024-04-02 01:26:22,043] [pool-1-thread-8] Initializing /data/josiah/cell-Z12.C0.tiff: [testng] [2024-04-02 01:26:22,670] [pool-1-thread-2] Initializing /data/curtis/images24.tiff: [testng] [2024-04-02 01:26:22,715] [pool-1-thread-8] Initializing /data/wayne/clown-rgb.tif: [testng] [2024-04-02 01:26:22,831] [pool-1-thread-5] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs000.TIF: [testng] [2024-04-02 01:26:23,284] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z062.tif: [testng] [2024-04-02 01:26:23,524] [pool-1-thread-2] Initializing /data/public/libtiff/ycbcr-cat.tif: [testng] [2024-04-02 01:26:23,570] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-01.tiff: [testng] [2024-04-02 01:26:23,624] [pool-1-thread-3] Initializing /data/jay/Cleared%2fStack.tif: [testng] [2024-04-02 01:26:23,871] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0212.TIF: [testng] [2024-04-02 01:26:24,383] [pool-1-thread-7] Initializing /data/matt/CR20070824-002_6202483715-06 003_0_P23_0Red.tif: [testng] [2024-04-02 01:26:24,645] [pool-1-thread-2] Initializing /data/public/condensation/E4.pattern8.tif: [testng] [2024-04-02 01:26:24,866] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z016.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 38213, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 5 minutes 42 seconds Finished: SUCCESS