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Started by upstream project "BIOFORMATS-test-repo" build number 20 originally caused by: Started by upstream project "Trigger" build number 23 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins5855959536006004377.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_2517_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:55:56,541 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:55:56,544 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:55:56,544 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:55:56,546 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:55:56,546 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:55:56,547 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:55:56,547 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:55:56,547 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:55:56,548 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:55:56,549 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:55:56,550 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:55:56,550 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:55:56,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:55:56,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:55:56,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:55:56,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:55:56,828 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:55:56,828 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:55:56,828 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:55:56,829 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:55:56,829 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:55:56,831 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:55:56,831 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 283 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-02 01:55:56,842] [main] java.version = 11.0.16 [testng] 01:55:56,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:55:56,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:56,896 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-02_01-55-56.log] [testng] 01:55:56,898 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-04-02 01:55:56,902] [main] testng.directory = /data [testng] [2024-04-02 01:55:56,902] [main] testng.configDirectory = /config [testng] [2024-04-02 01:55:56,917] [main] testng.multiplier = 1.0 [testng] [2024-04-02 01:55:56,919] [main] testng.in-memory = false [testng] [2024-04-02 01:55:56,920] [main] testng.allow-missing = false [testng] [2024-04-02 01:55:56,920] [main] user.language = en [testng] [2024-04-02 01:55:56,920] [main] user.country = ${user.country} [testng] [2024-04-02 01:55:56,920] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-04-02 02:04:04,053] [main] ---------------------------------------- [testng] [2024-04-02 02:04:04,053] [main] Total files: 7329 [testng] [2024-04-02 02:04:04,054] [main] Scan time: 487.133 s (66 ms/file) [testng] [2024-04-02 02:04:04,054] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-02 02:07:21,479] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] 02:07:21,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:07:21,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:21,482 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-02_02-07-21.log] [testng] 02:07:21,482 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13f031be - End of configuration. [testng] [2024-04-02 02:07:21,623] [pool-1-thread-1] Used files list does not include base file [testng] [2024-04-02 02:07:21,630] [pool-1-thread-12] Initializing /data/josh/2101to600e.stk: [testng] 02:07:21,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:07:21,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:21,631 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-02_02-07-21.log] [testng] 02:07:21,632 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5979703c - End of configuration. [testng] [2024-04-02 02:07:22,287] [pool-1-thread-11] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] 02:07:22,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:07:22,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:22,288 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-02_02-07-22.log] [testng] 02:07:22,288 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fae17df - End of configuration. [testng] [2024-04-02 02:07:22,397] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] 02:07:22,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:07:22,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:22,397 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-02_02-07-22.log] [testng] 02:07:22,398 |-INFO in ch.qos.logback.core.sift.SiftProcessor@aae8d3c - End of configuration. [testng] [2024-04-02 02:07:22,478] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] 02:07:22,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:07:22,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:22,479 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-02_02-07-22.log] [testng] 02:07:22,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76d2a9eb - End of configuration. [testng] [2024-04-02 02:07:22,549] [pool-1-thread-9] Used files list does not include base file [testng] [2024-04-02 02:07:22,552] [pool-1-thread-8] Initializing /data/dave/Z Series.stk: [testng] 02:07:22,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:07:22,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:22,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-02_02-07-22.log] [testng] 02:07:22,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c926154 - End of configuration. [testng] [2024-04-02 02:07:22,626] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] 02:07:22,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:07:22,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:22,627 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-02_02-07-22.log] [testng] 02:07:22,628 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40a6bdb1 - End of configuration. [testng] [2024-04-02 02:07:22,677] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] 02:07:22,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:07:22,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:22,678 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-02_02-07-22.log] [testng] 02:07:22,678 |-INFO in ch.qos.logback.core.sift.SiftProcessor@268b42c6 - End of configuration. [testng] [2024-04-02 02:07:22,761] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] 02:07:22,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:07:22,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:22,762 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-02_02-07-22.log] [testng] 02:07:22,762 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10015d1a - End of configuration. [testng] [2024-04-02 02:07:22,873] [pool-1-thread-5] Used files list does not include base file [testng] [2024-04-02 02:07:22,876] [pool-1-thread-4] Initializing /data/qa-31304/Well _C6_1.tif: [testng] 02:07:22,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:07:22,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:22,878 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-02_02-07-22.log] [testng] 02:07:22,878 |-INFO in ch.qos.logback.core.sift.SiftProcessor@727aa958 - End of configuration. [testng] [2024-04-02 02:07:23,040] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] 02:07:23,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:07:23,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:23,040 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-02_02-07-23.log] [testng] 02:07:23,041 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bbf8885 - End of configuration. [testng] [2024-04-02 02:07:23,136] [pool-1-thread-2] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] 02:07:23,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:07:23,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:23,137 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-02_02-07-23.log] [testng] 02:07:23,137 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bf0583 - End of configuration. [testng] [2024-04-02 02:07:24,768] [pool-1-thread-7] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-04-02 02:07:25,147] [pool-1-thread-8] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-04-02 02:07:25,456] [pool-1-thread-11] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-04-02 02:07:25,574] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-04-02 02:07:25,731] [pool-1-thread-10] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-04-02 02:07:25,924] [pool-1-thread-4] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-04-02 02:07:26,000] [pool-1-thread-7] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-04-02 02:07:26,113] [pool-1-thread-6] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-04-02 02:07:26,625] [pool-1-thread-11] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-04-02 02:07:27,005] [pool-1-thread-3] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-04-02 02:07:27,084] [pool-1-thread-7] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-04-02 02:07:27,269] [pool-1-thread-6] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-04-02 02:07:27,517] [pool-1-thread-8] Initializing /data/samples/zseries.stk: [testng] [2024-04-02 02:07:27,810] [pool-1-thread-10] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-04-02 02:07:27,960] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-04-02 02:07:27,982] [pool-1-thread-7] Used files list does not include base file [testng] [2024-04-02 02:07:28,115] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-04-02 02:07:28,168] [pool-1-thread-1] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-04-02 02:07:29,346] [pool-1-thread-5] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-04-02 02:07:29,593] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-04-02 02:07:29,700] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-04-02 02:07:29,815] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-04-02 02:07:30,055] [pool-1-thread-11] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-04-02 02:07:30,154] [pool-1-thread-3] Initializing /data/steve/Experiment2.stk: [testng] [2024-04-02 02:07:30,239] [pool-1-thread-8] Initializing /data/josh/2101to600f.stk: [testng] [2024-04-02 02:07:32,377] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-04-02 02:07:32,594] [pool-1-thread-11] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-04-02 02:07:32,892] [pool-1-thread-10] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-04-02 02:07:33,074] [pool-1-thread-3] Initializing /data/david/tl4.tif: [testng] [2024-04-02 02:07:34,645] [pool-1-thread-4] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-04-02 02:07:34,748] [pool-1-thread-12] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-04-02 02:07:35,005] [pool-1-thread-6] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-04-02 02:07:35,108] [pool-1-thread-9] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-04-02 02:07:35,296] [pool-1-thread-7] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-04-02 02:07:36,254] [pool-1-thread-5] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-04-02 02:07:36,559] [pool-1-thread-4] Initializing /data/samples/zserEight.stk: [testng] [2024-04-02 02:07:36,806] [pool-1-thread-11] Initializing /data/aaron/metamorph.stk: [testng] [2024-04-02 02:07:37,050] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-02 02:07:37,284] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-04-02 02:07:37,399] [pool-1-thread-5] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-04-02 02:07:40,703] [pool-1-thread-9] Initializing /data/alex/Selected FITC.stk: [testng] [2024-04-02 02:07:40,990] [pool-1-thread-6] Initializing /data/samples/zser24.stk: [testng] [2024-04-02 02:07:41,074] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-04-02 02:07:41,490] [pool-1-thread-6] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-04-02 02:07:41,550] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-02 02:07:41,638] [pool-1-thread-11] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-04-02 02:07:41,952] [pool-1-thread-9] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-04-02 02:07:42,160] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-04-02 02:07:42,703] [pool-1-thread-11] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-04-02 02:07:43,127] [pool-1-thread-9] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-04-02 02:07:43,306] [pool-1-thread-4] Initializing 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[pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-04-02 02:07:46,097] [pool-1-thread-10] Used files list does not include base file [testng] [2024-04-02 02:07:46,355] [pool-1-thread-4] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-04-02 02:07:46,744] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-02 02:07:47,066] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-04-02 02:07:50,018] [pool-1-thread-1] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-04-02 02:07:50,070] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-04-02 02:07:50,094] [pool-1-thread-4] Used files list does not include base file [testng] [2024-04-02 02:07:50,096] [pool-1-thread-6] Initializing 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-04-02 02:07:54,323] [pool-1-thread-4] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-04-02 02:07:54,591] [pool-1-thread-1] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-04-02 02:07:55,050] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-04-02 02:07:55,152] [pool-1-thread-6] Used files list does not include base file [testng] [2024-04-02 02:07:55,365] [pool-1-thread-4] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-04-02 02:07:56,153] [pool-1-thread-1] Initializing /data/samples/10xcalib.stk: [testng] [2024-04-02 02:07:56,526] [pool-1-thread-11] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-04-02 02:07:56,760] [pool-1-thread-8] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-02 02:07:56,894] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-04-02 02:07:57,187] [pool-1-thread-1] Initializing /data/josh/2101to600b.stk: [testng] [2024-04-02 02:07:58,785] [pool-1-thread-4] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-04-02 02:07:59,609] [pool-1-thread-12] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-04-02 02:07:59,984] [pool-1-thread-8] Initializing /data/cumol-test-series/23.001: [testng] [2024-04-02 02:08:00,058] [pool-1-thread-11] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-04-02 02:08:01,220] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-04-02 02:08:01,266] [pool-1-thread-6] Used files list does not include base file [testng] [2024-04-02 02:08:01,267] [pool-1-thread-12] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-04-02 02:08:01,320] [pool-1-thread-2] Initializing 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/data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-04-02 02:08:15,837] [pool-1-thread-4] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-04-02 02:08:15,907] [pool-1-thread-10] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-04-02 02:08:15,978] [pool-1-thread-7] Initializing /data/steve/Experiment2.tif: [testng] [2024-04-02 02:08:16,518] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-04-02 02:08:16,800] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-04-02 02:08:16,885] [pool-1-thread-12] Initializing /data/jerome/deconv.STK: [testng] [2024-04-02 02:08:17,231] [pool-1-thread-10] Initializing /data/qa-16915/m-04.tif: [testng] [2024-04-02 02:08:17,825] [pool-1-thread-7] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-04-02 02:08:17,983] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-02 02:08:18,050] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-02 02:08:18,352] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-04-02 02:08:18,446] [pool-1-thread-4] Used files list does not include base file [testng] [2024-04-02 02:08:19,137] [pool-1-thread-12] Initializing /data/josh/2101to800.stk: [testng] [2024-04-02 02:08:19,919] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-04-02 02:08:20,233] [pool-1-thread-7] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-04-02 02:08:20,577] [pool-1-thread-9] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-04-02 02:08:21,445] [pool-1-thread-6] Initializing 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base file [testng] [2024-04-02 02:08:25,640] [pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-04-02 02:08:27,505] [pool-1-thread-12] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-04-02 02:08:27,676] [pool-1-thread-11] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-04-02 02:08:28,374] [pool-1-thread-2] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-04-02 02:08:28,693] [pool-1-thread-6] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-04-02 02:08:29,418] [pool-1-thread-11] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-04-02 02:08:30,185] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-04-02 02:08:30,349] [pool-1-thread-9] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-04-02 02:08:31,861] [pool-1-thread-7] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-04-02 02:08:33,042] [pool-1-thread-1] Initializing /data/grant/X.STK: [testng] [2024-04-02 02:08:33,141] [pool-1-thread-11] Initializing /data/samples/zserSixteen.stk: [testng] [2024-04-02 02:08:33,188] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-02 02:08:33,540] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-04-02 02:08:33,868] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-04-02 02:08:34,823] [pool-1-thread-7] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-04-02 02:08:35,402] [pool-1-thread-12] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-04-02 02:08:35,554] [pool-1-thread-1] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-04-02 02:08:35,737] [pool-1-thread-2] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-04-02 02:08:36,156] [pool-1-thread-7] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-04-02 02:08:36,600] [pool-1-thread-6] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-04-02 02:08:36,825] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-02 02:08:37,243] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-04-02 02:08:37,352] [pool-1-thread-6] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-04-02 02:08:37,983] [pool-1-thread-2] Initializing /data/thomas/t_test2001.tif: [testng] [2024-04-02 02:08:38,042] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-04-02 02:08:38,097] [pool-1-thread-1] Used files list does not include base file [testng] [2024-04-02 02:08:38,421] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-04-02 02:08:38,481] [pool-1-thread-7] Used files list does not include base file [testng] [2024-04-02 02:08:38,684] [pool-1-thread-11] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-04-02 02:08:38,798] [pool-1-thread-2] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-04-02 02:08:39,140] [pool-1-thread-6] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-04-02 02:08:39,345] [pool-1-thread-7] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-04-02 02:08:40,148] [pool-1-thread-11] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-04-02 02:08:40,471] [pool-1-thread-6] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-04-02 02:08:47,529] [pool-1-thread-7] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-04-02 02:08:47,607] [pool-1-thread-10] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-04-02 02:08:48,925] [pool-1-thread-1] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-04-02 02:08:49,168] [pool-1-thread-11] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-04-02 02:08:49,687] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-04-02 02:08:49,753] [pool-1-thread-12] Used files list does not include base file [testng] [2024-04-02 02:08:49,828] [pool-1-thread-7] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-04-02 02:08:50,805] [pool-1-thread-7] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-04-02 02:08:51,060] [pool-1-thread-1] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-04-02 02:08:51,507] [pool-1-thread-10] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-04-02 02:08:52,614] [pool-1-thread-7] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-04-02 02:08:53,072] [pool-1-thread-1] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-04-02 02:08:53,155] [pool-1-thread-10] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-04-02 02:08:53,564] [pool-1-thread-12] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-04-02 02:08:54,268] [pool-1-thread-4] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-04-02 02:08:54,480] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-04-02 02:08:54,812] [pool-1-thread-10] Initializing /data/qa-16915/m-01.tif: [testng] [2024-04-02 02:08:56,003] [pool-1-thread-4] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-04-02 02:08:56,467] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-04-02 02:08:56,556] [pool-1-thread-1] Used files list does not include base file [testng] [2024-04-02 02:08:56,985] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-04-02 02:08:57,272] [pool-1-thread-4] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-04-02 02:08:57,530] [pool-1-thread-12] Initializing /data/jae/RGB_s34.tif: [testng] [2024-04-02 02:08:58,710] [pool-1-thread-10] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-04-02 02:08:58,841] [pool-1-thread-3] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-04-02 02:08:59,800] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-04-02 02:08:59,854] [pool-1-thread-4] Used files list does not include base file [testng] [2024-04-02 02:08:59,938] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-04-02 02:09:00,222] [pool-1-thread-10] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-04-02 02:09:00,400] [pool-1-thread-1] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-04-02 02:09:00,518] [pool-1-thread-7] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-04-02 02:09:00,821] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-04-02 02:09:01,257] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-02 02:09:01,520] [pool-1-thread-1] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-04-02 02:09:02,748] [pool-1-thread-12] Initializing /data/ascb/mt aim.tif: [testng] [2024-04-02 02:09:02,792] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-04-02 02:09:03,558] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-04-02 02:09:03,645] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-04-02 02:09:03,730] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-02 02:09:04,099] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-04-02 02:09:04,182] [pool-1-thread-10] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-04-02 02:09:05,442] [pool-1-thread-12] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-04-02 02:09:05,502] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-04-02 02:09:05,830] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-04-02 02:09:06,158] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-04-02 02:09:06,209] [pool-1-thread-7] Used files list does not include base file [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 24 minutes 0 seconds Finished: SUCCESS