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Started by upstream project "BIOFORMATS-test-repo" build number 20 originally caused by: Started by upstream project "Trigger" build number 23 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins17227055589972827414.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_2521_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 02:07:17,295 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:07:17,297 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 02:07:17,297 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:07:17,298 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:07:17,298 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:07:17,299 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:07:17,299 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:07:17,299 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:07:17,299 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:07:17,300 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:07:17,300 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:07:17,301 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:07:17,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:07:17,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:07:17,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:07:17,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:07:17,493 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:07:17,493 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:07:17,493 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:07:17,494 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:07:17,494 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 02:07:17,495 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 02:07:17,495 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-02 02:07:17,504] [main] java.version = 11.0.16 [testng] 02:07:17,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:07:17,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:17,550 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-02_02-07-17.log] [testng] 02:07:17,551 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-04-02 02:07:17,553] [main] testng.directory = /data [testng] [2024-04-02 02:07:17,553] [main] testng.configDirectory = /config [testng] [2024-04-02 02:07:17,581] [main] testng.multiplier = 1.0 [testng] [2024-04-02 02:07:17,582] [main] testng.in-memory = false [testng] [2024-04-02 02:07:17,582] [main] testng.allow-missing = false [testng] [2024-04-02 02:07:17,582] [main] user.language = en [testng] [2024-04-02 02:07:17,582] [main] user.country = ${user.country} [testng] [2024-04-02 02:07:17,582] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-04-02 02:07:30,675] [main] ---------------------------------------- [testng] [2024-04-02 02:07:30,675] [main] Total files: 268 [testng] [2024-04-02 02:07:30,675] [main] Scan time: 13.092 s (48 ms/file) [testng] [2024-04-02 02:07:30,675] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-02 02:07:44,502] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] 02:07:44,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:07:44,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:44,505 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-02_02-07-44.log] [testng] 02:07:44,505 |-INFO in ch.qos.logback.core.sift.SiftProcessor@595c27bd - End of configuration. [testng] [2024-04-02 02:07:44,553] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] 02:07:44,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:07:44,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:44,555 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-02_02-07-44.log] [testng] 02:07:44,555 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b1b9689 - End of configuration. [testng] [2024-04-02 02:07:44,580] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] 02:07:44,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:07:44,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:44,581 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-02_02-07-44.log] [testng] 02:07:44,582 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1731ea2 - End of configuration. [testng] [2024-04-02 02:07:44,659] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] 02:07:44,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:07:44,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:44,661 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-02_02-07-44.log] [testng] 02:07:44,661 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2779be86 - End of configuration. [testng] [2024-04-02 02:07:44,773] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] 02:07:44,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:07:44,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:44,774 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-02_02-07-44.log] [testng] 02:07:44,775 |-INFO in ch.qos.logback.core.sift.SiftProcessor@179aee97 - End of configuration. [testng] [2024-04-02 02:07:44,805] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] 02:07:44,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:07:44,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:44,808 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-02_02-07-44.log] [testng] 02:07:44,810 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1075138d - End of configuration. [testng] [2024-04-02 02:07:44,841] [pool-1-thread-7] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] 02:07:44,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:07:44,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:44,842 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-02_02-07-44.log] [testng] 02:07:44,842 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a537a73 - End of configuration. [testng] [2024-04-02 02:07:44,945] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] 02:07:44,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:07:44,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:44,946 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-02_02-07-44.log] [testng] 02:07:44,947 |-INFO in ch.qos.logback.core.sift.SiftProcessor@717e7f8f - End of configuration. [testng] [2024-04-02 02:07:44,976] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] 02:07:44,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:07:44,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:44,978 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-02_02-07-44.log] [testng] 02:07:44,978 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78fb0b04 - End of configuration. [testng] [2024-04-02 02:07:44,997] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] 02:07:44,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:07:44,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:44,997 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-02_02-07-44.log] [testng] 02:07:44,998 |-INFO in ch.qos.logback.core.sift.SiftProcessor@727a1e7a - End of configuration. [testng] [2024-04-02 02:07:45,030] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] 02:07:45,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:07:45,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:45,032 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-02_02-07-45.log] [testng] 02:07:45,033 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c400c4 - End of configuration. [testng] [2024-04-02 02:07:45,087] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] 02:07:45,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:07:45,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:45,088 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-02_02-07-45.log] [testng] 02:07:45,088 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ede508b - End of configuration. [testng] [2024-04-02 02:07:47,441] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-04-02 02:07:47,458] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-04-02 02:07:47,489] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-04-02 02:07:47,540] [pool-1-thread-6] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-04-02 02:07:47,579] [pool-1-thread-12] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-04-02 02:07:47,611] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-04-02 02:07:47,650] [pool-1-thread-8] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-04-02 02:07:47,659] [pool-1-thread-9] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-04-02 02:07:47,697] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-04-02 02:07:47,710] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-04-02 02:07:47,728] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-04-02 02:07:48,292] [pool-1-thread-4] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-04-02 02:07:48,405] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-04-02 02:07:48,422] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-04-02 02:07:48,442] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-04-02 02:07:48,514] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-04-02 02:07:48,682] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-04-02 02:07:48,807] [pool-1-thread-10] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-04-02 02:07:48,816] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-04-02 02:07:48,911] [pool-1-thread-8] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-04-02 02:07:48,999] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-04-02 02:07:49,010] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-04-02 02:07:49,040] [pool-1-thread-3] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-04-02 02:07:49,067] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-04-02 02:07:49,090] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-04-02 02:07:49,159] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-04-02 02:07:49,196] [pool-1-thread-5] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-04-02 02:07:49,360] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-04-02 02:07:49,425] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-04-02 02:07:49,474] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-04-02 02:07:49,527] [pool-1-thread-12] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-04-02 02:07:49,620] [pool-1-thread-2] Initializing /data/steve/FITS/M51.fits: [testng] [2024-04-02 02:07:49,665] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-04-02 02:07:49,677] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-04-02 02:07:49,700] [pool-1-thread-3] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-04-02 02:07:49,760] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-04-02 02:07:49,829] [pool-1-thread-8] Initializing /data/steve/FITS/M104.fits: [testng] [2024-04-02 02:07:49,842] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-04-02 02:07:49,875] [pool-1-thread-1] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-04-02 02:07:49,914] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-04-02 02:07:50,010] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-04-02 02:07:50,056] [pool-1-thread-8] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-04-02 02:07:50,120] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-04-02 02:07:50,131] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-04-02 02:07:50,158] [pool-1-thread-10] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-04-02 02:07:50,200] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-04-02 02:07:50,221] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-04-02 02:07:50,347] [pool-1-thread-7] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-04-02 02:07:50,391] [pool-1-thread-1] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-04-02 02:07:50,407] [pool-1-thread-8] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-04-02 02:07:50,469] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-04-02 02:07:50,596] [pool-1-thread-10] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-04-02 02:07:50,632] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-04-02 02:07:50,717] [pool-1-thread-2] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-04-02 02:07:50,905] [pool-1-thread-5] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-04-02 02:07:50,934] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-04-02 02:07:50,974] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-04-02 02:07:51,016] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-04-02 02:07:51,060] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-04-02 02:07:51,103] [pool-1-thread-3] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-04-02 02:07:51,264] [pool-1-thread-8] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-04-02 02:07:51,289] [pool-1-thread-1] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-04-02 02:07:51,359] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-04-02 02:07:51,370] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-04-02 02:07:51,379] [pool-1-thread-9] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-04-02 02:07:51,389] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-04-02 02:07:51,407] [pool-1-thread-2] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-04-02 02:07:51,417] [pool-1-thread-11] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-04-02 02:07:51,670] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-04-02 02:07:51,759] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-04-02 02:07:51,852] [pool-1-thread-4] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-04-02 02:07:51,930] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-04-02 02:07:51,999] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-04-02 02:07:52,009] [pool-1-thread-2] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-04-02 02:07:52,117] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-04-02 02:07:52,229] [pool-1-thread-6] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-04-02 02:07:52,275] [pool-1-thread-9] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-04-02 02:07:52,306] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-04-02 02:07:52,400] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-04-02 02:07:52,416] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-04-02 02:07:52,481] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-04-02 02:07:52,590] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-04-02 02:07:52,648] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-04-02 02:07:52,669] [pool-1-thread-12] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-04-02 02:07:52,682] [pool-1-thread-11] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-04-02 02:07:52,702] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-04-02 02:07:52,787] [pool-1-thread-4] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-04-02 02:07:52,813] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-04-02 02:07:52,886] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-04-02 02:07:52,952] [pool-1-thread-9] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-04-02 02:07:52,970] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-04-02 02:07:52,996] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-04-02 02:07:53,147] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-04-02 02:07:53,269] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-04-02 02:07:53,284] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-04-02 02:07:53,398] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-04-02 02:07:53,500] [pool-1-thread-5] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-04-02 02:07:53,554] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-04-02 02:07:53,709] [pool-1-thread-11] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-04-02 02:07:53,787] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-04-02 02:07:53,810] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-04-02 02:07:53,860] [pool-1-thread-6] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-04-02 02:07:53,917] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-04-02 02:07:53,943] [pool-1-thread-3] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-04-02 02:07:54,079] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-04-02 02:07:54,249] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-04-02 02:07:54,294] [pool-1-thread-12] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-04-02 02:07:54,578] [pool-1-thread-2] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-04-02 02:07:54,704] [pool-1-thread-3] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-04-02 02:07:54,769] [pool-1-thread-4] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-04-02 02:07:54,812] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-04-02 02:07:54,894] [pool-1-thread-1] Initializing /data/steve/FITS/M13.fits: [testng] [2024-04-02 02:07:54,909] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-04-02 02:07:54,967] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-04-02 02:07:55,006] [pool-1-thread-8] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-04-02 02:07:55,064] [pool-1-thread-5] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-04-02 02:07:55,088] [pool-1-thread-7] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2024-04-02 02:07:55,352] [pool-1-thread-1] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-04-02 02:07:55,452] [pool-1-thread-10] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-04-02 02:07:55,626] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-04-02 02:07:55,725] [pool-1-thread-4] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-04-02 02:07:55,763] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-04-02 02:07:55,850] [pool-1-thread-9] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-04-02 02:07:55,964] [pool-1-thread-5] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-04-02 02:07:56,098] [pool-1-thread-11] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-04-02 02:07:56,156] [pool-1-thread-3] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-04-02 02:07:56,303] [pool-1-thread-1] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-04-02 02:07:56,508] [pool-1-thread-7] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-04-02 02:07:56,586] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-04-02 02:07:56,630] [pool-1-thread-8] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2024-04-02 02:07:56,675] [pool-1-thread-10] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-04-02 02:07:56,734] [pool-1-thread-4] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-04-02 02:07:56,987] [pool-1-thread-5] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-04-02 02:07:57,185] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-04-02 02:07:57,246] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-04-02 02:07:57,346] [pool-1-thread-2] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-04-02 02:07:57,415] [pool-1-thread-1] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2024-04-02 02:07:57,497] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-04-02 02:07:57,521] [pool-1-thread-7] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-04-02 02:07:57,636] [pool-1-thread-8] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-04-02 02:07:57,699] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-04-02 02:07:57,750] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-04-02 02:07:57,805] [pool-1-thread-10] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-04-02 02:07:57,962] [pool-1-thread-5] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-04-02 02:07:58,041] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-04-02 02:07:58,139] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-04-02 02:07:58,197] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-04-02 02:07:58,270] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 46 seconds Finished: SUCCESS