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Started by upstream project "BIOFORMATS-test-repo" build number 22 originally caused by: Started by upstream project "Trigger" build number 25 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins9044748635683537147.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_2608_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:19:28,368 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:19:28,370 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 01:19:28,370 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:19:28,371 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:19:28,371 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:19:28,372 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:19:28,372 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:19:28,372 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:19:28,373 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:19:28,373 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:19:28,374 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:19:28,374 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:19:28,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:19:28,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:19:28,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:19:28,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:19:28,625 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:19:28,625 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:19:28,625 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:19:28,626 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:19:28,626 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 01:19:28,627 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 01:19:28,627 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 254 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-04 01:19:28,641] [main] java.version = 21 [testng] 01:19:28,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:19:28,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:19:28,696 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-04_01-19-28.log] [testng] 01:19:28,698 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-04-04 01:19:28,700] [main] testng.directory = /data [testng] [2024-04-04 01:19:28,700] [main] testng.configDirectory = /config [testng] [2024-04-04 01:19:28,710] [main] testng.multiplier = 1.0 [testng] [2024-04-04 01:19:28,711] [main] testng.in-memory = false [testng] [2024-04-04 01:19:28,711] [main] testng.allow-missing = false [testng] [2024-04-04 01:19:28,711] [main] user.language = en [testng] [2024-04-04 01:19:28,711] [main] user.country = ${user.country} [testng] [2024-04-04 01:19:28,711] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-04-04 01:19:42,510] [main] ---------------------------------------- [testng] [2024-04-04 01:19:42,511] [main] Total files: 4424 [testng] [2024-04-04 01:19:42,511] [main] Scan time: 13.799 s (3 ms/file) [testng] [2024-04-04 01:19:42,512] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 721 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-04 01:21:31,063] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z017.tif: [testng] 01:21:31,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:21:31,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:31,065 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-04_01-21-31.log] [testng] 01:21:31,065 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cc30abd - End of configuration. [testng] [2024-04-04 01:21:31,093] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C1_Z023.tif: [testng] 01:21:31,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:21:31,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:31,094 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-04_01-21-31.log] [testng] 01:21:31,095 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c9a6c6 - End of configuration. [testng] [2024-04-04 01:21:31,125] [pool-1-thread-11] Initializing /data/public/libtiff/quad-jpeg.tif: [testng] 01:21:31,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:21:31,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:31,126 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-04_01-21-31.log] [testng] 01:21:31,127 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bb0da1d - End of configuration. [testng] [2024-04-04 01:21:31,146] [pool-1-thread-10] Initializing /data/ascb/CYT-55_HowellGolgiRibbonOutlined_4800.tif: [testng] 01:21:31,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:21:31,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:31,147 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-04_01-21-31.log] [testng] 01:21:31,148 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f399688 - End of configuration. [testng] [2024-04-04 01:21:31,190] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-01.tiff: [testng] 01:21:31,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:21:31,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:31,191 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-04_01-21-31.log] [testng] 01:21:31,191 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e763b18 - End of configuration. [testng] [2024-04-04 01:21:31,211] [pool-1-thread-8] Initializing /data/misc/mri.eps: [testng] 01:21:31,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:21:31,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:31,212 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-04_01-21-31.log] [testng] 01:21:31,212 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d2316cd - End of configuration. [testng] [2024-04-04 01:21:31,238] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z035.tif: [testng] 01:21:31,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:21:31,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:31,239 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-04_01-21-31.log] [testng] 01:21:31,239 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49c3dccb - End of configuration. [testng] [2024-04-04 01:21:31,261] [pool-1-thread-6] Initializing /data/josiah/cell-Z27.C1.tiff: [testng] 01:21:31,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:21:31,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:31,262 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-04_01-21-31.log] [testng] 01:21:31,262 |-INFO in ch.qos.logback.core.sift.SiftProcessor@488be3a7 - End of configuration. [testng] [2024-04-04 01:21:31,288] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z023.tif: [testng] 01:21:31,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:21:31,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:31,290 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-04_01-21-31.log] [testng] 01:21:31,290 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2106ca5f - End of configuration. [testng] [2024-04-04 01:21:31,315] [pool-1-thread-4] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x16.tiff: [testng] 01:21:31,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:21:31,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:31,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-04_01-21-31.log] [testng] 01:21:31,316 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fbc1ecc - End of configuration. [testng] [2024-04-04 01:21:31,335] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z036.tif: [testng] 01:21:31,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:21:31,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:31,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-04_01-21-31.log] [testng] 01:21:31,336 |-INFO in ch.qos.logback.core.sift.SiftProcessor@103a2b4d - End of configuration. [testng] [2024-04-04 01:21:31,357] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z059.tif: [testng] 01:21:31,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:21:31,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:31,357 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-04_01-21-31.log] [testng] 01:21:31,358 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76dadac0 - End of configuration. [testng] [2024-04-04 01:21:32,881] [pool-1-thread-4] Initializing /data/josh/jnb1s1_raw0222.TIF: [testng] [2024-04-04 01:21:32,929] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z015.tif: [testng] [2024-04-04 01:21:32,949] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z031.tif: [testng] [2024-04-04 01:21:32,969] [pool-1-thread-2] Initializing /data/josh/NESb_C2_TP7.tiff: [testng] [2024-04-04 01:21:33,030] [pool-1-thread-5] Initializing /data/samples/melissa/strike-uncompressed.tiff: [testng] [2024-04-04 01:21:33,051] [pool-1-thread-7] Initializing /data/josiah/cell-Z16.C0.tiff: [testng] [2024-04-04 01:21:33,074] [pool-1-thread-11] Initializing /data/ascb/FND-28a_PaladeHepatocyteLabeled_4800.tif: [testng] [2024-04-04 01:21:34,989] [pool-1-thread-8] Initializing /data/imagesc-82872/SG11410002_253174651388_S001.tif: [testng] [2024-04-04 01:21:35,073] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0253.TIF: [testng] [2024-04-04 01:21:35,131] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z062.tif: [testng] [2024-04-04 01:21:35,198] [pool-1-thread-6] Initializing /data/curtis/map/jumps-over: [testng] [2024-04-04 01:21:35,703] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z045.tif: [testng] [2024-04-04 01:21:36,031] [pool-1-thread-12] Initializing /data/damian/06m.tiff: [testng] [2024-04-04 01:21:36,066] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C0_Z026.tif: [testng] [2024-04-04 01:21:36,091] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0211.TIF: [testng] [2024-04-04 01:21:36,157] [pool-1-thread-5] Initializing /data/lee/r03c03f01p01rc2-ch1sk1fk1fl1.tiff: [testng] [2024-04-04 01:21:36,269] [pool-1-thread-7] Initializing /data/josiah/cell-Z19.C0.tiff: [testng] [2024-04-04 01:21:36,460] [pool-1-thread-9] Initializing /data/damian/21m.tiff: [testng] [2024-04-04 01:21:36,501] [pool-1-thread-4] Initializing /data/samples/cielab/Ski_TC8-03_sRGB.tif: [testng] [2024-04-04 01:21:36,555] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z031.tif: [testng] [2024-04-04 01:21:36,578] [pool-1-thread-6] Initializing /data/josiah/cell-Z38.C0.tiff: [testng] [2024-04-04 01:21:36,843] [pool-1-thread-1] Initializing /data/stephane/F3L1A_DNA 2.tif: [testng] [2024-04-04 01:21:37,120] [pool-1-thread-7] Initializing /data/josh/jnb1s1_raw0202.TIF: [testng] [2024-04-04 01:21:37,165] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0254.TIF: [testng] [2024-04-04 01:21:37,280] [pool-1-thread-2] Initializing /data/ascb/CYT-152_Raben_Eating.tif: [testng] [2024-04-04 01:21:37,342] [pool-1-thread-9] Initializing /data/koen/nt3_cortex_rots_thresh45.tif: [testng] [2024-04-04 01:21:37,379] [pool-1-thread-6] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs005.TIF: [testng] [2024-04-04 01:21:37,443] [pool-1-thread-3] Initializing /data/damian/33m.tiff: [testng] [2024-04-04 01:21:37,886] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z052.tif: [testng] [2024-04-04 01:21:38,036] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z059.tif: [testng] [2024-04-04 01:21:38,066] [pool-1-thread-12] Initializing /data/ascb/CYT-35_FriendOsmiumEpididymis_4800.tif: [testng] [2024-04-04 01:21:38,134] [pool-1-thread-7] Initializing /data/brian/CurrentSystems.tiff: [testng] [2024-04-04 01:21:38,427] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z014.tif: [testng] [2024-04-04 01:21:38,553] [pool-1-thread-5] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-64x48.tiff: [testng] [2024-04-04 01:21:38,611] [pool-1-thread-9] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs007.TIF: [testng] [2024-04-04 01:21:38,749] [pool-1-thread-6] Initializing /data/brian/Ch1_fld1.tif: [testng] [2024-04-04 01:21:39,018] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z054.tif: [testng] [2024-04-04 01:21:39,158] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z030.tif: [testng] [2024-04-04 01:21:39,484] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C0_Z007.tif: [testng] [2024-04-04 01:21:39,717] [pool-1-thread-1] Initializing /data/julien/Chadisoukkarieh.TIF: [testng] [2024-04-04 01:21:39,819] [pool-1-thread-5] Initializing /data/public/libtiff/dscf0013.tif: [testng] [2024-04-04 01:21:39,859] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x32.tiff: [testng] [2024-04-04 01:21:40,175] [pool-1-thread-3] Initializing /data/julien/baldindq-OVA.TIF: [testng] [2024-04-04 01:21:40,263] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z025.tif: [testng] [2024-04-04 01:21:40,284] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C0_Z029.tif: [testng] [2024-04-04 01:21:40,314] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0227.TIF: [testng] [2024-04-04 01:21:40,477] [pool-1-thread-1] Initializing /data/kevino/_BF_00000.tif: 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[pool-1-thread-8] Initializing /data/pavel/Dmel/full.pattern: [testng] [2024-04-04 01:22:58,932] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z019.tif: [testng] [2024-04-04 01:22:59,110] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z018.tif: [testng] [2024-04-04 01:22:59,185] [pool-1-thread-1] Initializing /data/josiah/cell-Z31.C0.tiff: [testng] [2024-04-04 01:22:59,295] [pool-1-thread-5] Initializing /data/andrew/wibble-tmp4.tiff: [testng] [2024-04-04 01:22:59,323] [pool-1-thread-12] Initializing /data/qa-4965/2012_10_31_GFPbiflinmKate_29hpf_20x_1.2_7_001.tif: [testng] [2024-04-04 01:22:59,368] [pool-1-thread-3] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs000.TIF: [testng] [2024-04-04 01:22:59,479] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z043.tif: [testng] [2024-04-04 01:22:59,541] [pool-1-thread-11] Initializing /data/johan/Test1_12.tif: [testng] [2024-04-04 01:22:59,909] [pool-1-thread-5] Initializing 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01:23:25,484] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C1_Z008.tif: [testng] [2024-04-04 01:23:25,531] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0223.TIF: [testng] [2024-04-04 01:23:25,584] [pool-1-thread-4] Initializing /data/ascb/FND-26a_PaladeGlycogenLabeled_4800.tif: [testng] [2024-04-04 01:23:28,160] [pool-1-thread-10] Initializing /data/brian/PlantCell/PlantCell_C1_Z001.tif: [testng] [2024-04-04 01:23:28,270] [pool-1-thread-11] Initializing /data/chris-wood/15ms full low light.tif: [testng] [2024-04-04 01:23:28,464] [pool-1-thread-1] Initializing /data/wayne/Rockies-grayscale.tif: [testng] [2024-04-04 01:23:28,530] [pool-1-thread-10] Initializing /data/michael/MFISH.tiff: [testng] [2024-04-04 01:23:28,863] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z063.tif: [testng] [2024-04-04 01:23:29,049] [pool-1-thread-1] Initializing /data/ascb/CYT-49_FriendSecretoryPair_4800.tif: [testng] [2024-04-04 01:23:29,293] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z063.tif: [testng] [2024-04-04 01:23:29,425] [pool-1-thread-10] Initializing /data/brian/retina/retina_C1_Z057.tif: [testng] [2024-04-04 01:23:29,819] [pool-1-thread-6] Initializing /data/public/condensation/A5.pattern1.tif: [testng] [2024-04-04 01:23:29,915] [pool-1-thread-10] Initializing /data/public/condensation/B12.pattern5.tif: [testng] [2024-04-04 01:23:30,431] [pool-1-thread-6] Initializing /data/josh/stack.tif: [testng] [2024-04-04 01:23:30,501] [pool-1-thread-10] Initializing /data/brian/PlantCell/PlantCell_C1_Z004.tif: [testng] [2024-04-04 01:23:30,870] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0251.TIF: [testng] [2024-04-04 01:23:31,720] [pool-1-thread-6] Initializing /data/curtis/map/the-quick: [testng] [2024-04-04 01:23:31,776] [pool-1-thread-10] Initializing /data/kevino/_BF_00001.tif: [testng] [2024-04-04 01:23:32,199] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z010.tif: [testng] [2024-04-04 01:23:32,238] [pool-1-thread-12] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs002.TIF: [testng] [2024-04-04 01:23:32,320] [pool-1-thread-6] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x48.tiff: [testng] [2024-04-04 01:23:32,634] [pool-1-thread-8] Initializing /data/lzw/DendriteForks.tif: [testng] [2024-04-04 01:23:32,731] [pool-1-thread-6] Initializing /data/qa-7589/CalGrid2.tif: [testng] [2024-04-04 01:23:32,796] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z037.tif: [testng] [2024-04-04 01:23:32,845] [pool-1-thread-10] Initializing /data/tamjid/Image_843.tif: [testng] [2024-04-04 01:23:33,082] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C0_Z016.tif: [testng] [2024-04-04 01:23:33,161] [pool-1-thread-11] Initializing /data/curtis/images24.tiff: [testng] [2024-04-04 01:23:33,211] [pool-1-thread-6] Initializing /data/carolyn/tumor_2.tif: [testng] [2024-04-04 01:23:33,414] [pool-1-thread-12] Initializing 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01:23:35,886] [pool-1-thread-12] Initializing /data/jeff/erdas_spnad83.tif: [testng] [2024-04-04 01:23:35,929] [pool-1-thread-7] Initializing /data/curtis/itk/MG63_0_1.tif: [testng] [2024-04-04 01:23:36,386] [pool-1-thread-2] Initializing /data/curtis/test2.tiff: [testng] [2024-04-04 01:23:36,527] [pool-1-thread-7] Initializing /data/wayne/Rockies-rgb.tif: [testng] [2024-04-04 01:23:36,562] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0228.TIF: [testng] [2024-04-04 01:23:36,735] [pool-1-thread-2] Initializing /data/josiah/cell-Z15.C0.tiff: [testng] [2024-04-04 01:23:37,186] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z000.tif: [testng] [2024-04-04 01:23:37,251] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C1_Z021.tif: [testng] [2024-04-04 01:23:37,303] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z027.tif: [testng] [2024-04-04 01:23:37,464] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z011.tif: [testng] [2024-04-04 01:23:37,552] [pool-1-thread-7] Initializing /data/ascb/bad/CYT-76_PasolliMouse1_4800.tif: [testng] [2024-04-04 01:23:37,700] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C0_Z000.tif: [testng] [2024-04-04 01:23:37,726] [pool-1-thread-12] Initializing /data/josiah/cell-Z37.C1.tiff: [testng] [2024-04-04 01:23:37,810] [pool-1-thread-3] Initializing /data/josiah/cell-Z24.C1.tiff: [testng] [2024-04-04 01:23:38,206] [pool-1-thread-2] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x48.tiff: [testng] [2024-04-04 01:23:38,226] [pool-1-thread-12] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs004.TIF: [testng] [2024-04-04 01:23:38,274] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C1_Z028.tif: [testng] [2024-04-04 01:23:38,365] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z019.tif: [testng] [2024-04-04 01:23:38,501] [pool-1-thread-9] Initializing /data/martin/head.tif: [testng] [2024-04-04 01:23:38,560] [pool-1-thread-2] Initializing /data/ascb/CYT-2_BaintonBoylesPhagocytosisYeastB_4800.tif: [testng] [2024-04-04 01:23:38,746] [pool-1-thread-3] Initializing /data/kevino/_BF_00002.tif: [testng] [2024-04-04 01:23:38,810] [pool-1-thread-6] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-64.tiff: [testng] [2024-04-04 01:23:39,019] [pool-1-thread-9] Initializing /data/josiah/cell-Z25.C1.tiff: [testng] [2024-04-04 01:23:39,120] [pool-1-thread-6] Initializing /data/josiah/cell-Z3.C1.tiff: [testng] [2024-04-04 01:23:39,163] [pool-1-thread-8] Initializing /data/josiah/cell-Z32.C0.tiff: [testng] [2024-04-04 01:23:39,361] [pool-1-thread-12] Initializing /data/jerome/e346_plt1(m)_F1-6.tif: [testng] [2024-04-04 01:23:39,434] [pool-1-thread-3] Initializing /data/marc/ball48_original_10x.tif: [testng] [2024-04-04 01:23:39,517] [pool-1-thread-9] Initializing /data/ascb/FND-15_PorterFast_4800.tif: [testng] [2024-04-04 01:23:41,869] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0233.TIF: [testng] [2024-04-04 01:23:41,929] [pool-1-thread-8] Initializing /data/josiah/cell-Z7.C0.tiff: [testng] [2024-04-04 01:23:41,954] [pool-1-thread-1] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-16x16.tiff: [testng] [2024-04-04 01:23:42,172] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z053.tif: [testng] [2024-04-04 01:23:42,434] [pool-1-thread-8] Initializing /data/wayne/m51-16bit.tif: [testng] [2024-04-04 01:23:42,563] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C1_Z012.tif: [testng] [2024-04-04 01:23:42,723] [pool-1-thread-12] Initializing /data/public/condensation/A5.pattern2.tif: [testng] [2024-04-04 01:23:42,881] [pool-1-thread-6] Initializing /data/jay/Cleared%2fStack.tif: [testng] [2024-04-04 01:23:42,936] [pool-1-thread-11] Initializing /data/bene/3d-example-stack.tif: [testng] [2024-04-04 01:23:43,059] [pool-1-thread-1] Initializing /data/damian/12m.tiff: [testng] [2024-04-04 01:23:43,086] [pool-1-thread-8] Initializing /data/public/condensation/A6.pattern2.tif: [testng] [2024-04-04 01:23:43,387] [pool-1-thread-12] Initializing /data/paulh/quickpollen4_w1_t1.tif: [testng] [2024-04-04 01:23:43,594] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z023.tif: [testng] [2024-04-04 01:23:43,625] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0256.TIF: [testng] [2024-04-04 01:23:43,668] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z005.tif: [testng] [2024-04-04 01:23:43,727] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z035.tif: [testng] [2024-04-04 01:23:43,884] [pool-1-thread-10] Initializing /data/josiah/cell-Z9.C1.tiff: [testng] [2024-04-04 01:23:43,909] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z058.tif: [testng] [2024-04-04 01:23:43,941] [pool-1-thread-12] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-01.tiff: [testng] [2024-04-04 01:23:44,005] [pool-1-thread-11] Initializing /data/public/libtiff/caspian.tif: [testng] [2024-04-04 01:23:44,066] [pool-1-thread-8] Initializing /data/josiah/cell-Z15.C1.tiff: [testng] [2024-04-04 01:23:44,119] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z003.tif: [testng] [2024-04-04 01:23:44,202] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z058.tif: [testng] [2024-04-04 01:23:44,311] [pool-1-thread-12] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-64.tiff: [testng] [2024-04-04 01:23:44,375] [pool-1-thread-10] Initializing /data/imagesc-82872/WT_Uninfected_top_right.tiff: [testng] [2024-04-04 01:23:44,978] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0213.TIF: [testng] [2024-04-04 01:23:45,038] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0206.TIF: [testng] [2024-04-04 01:23:45,135] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C0_Z033.tif: [testng] [2024-04-04 01:23:45,221] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C1_Z005.tif: [testng] [2024-04-04 01:23:45,244] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z042.tif: [testng] [2024-04-04 01:23:45,286] [pool-1-thread-11] Initializing /data/public/condensation/E4.pattern5.tif: [testng] [2024-04-04 01:23:45,516] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0257.TIF: [testng] [2024-04-04 01:23:45,618] [pool-1-thread-12] Initializing /data/josiah/cell-Z29.C0.tiff: [testng] [2024-04-04 01:23:45,641] [pool-1-thread-1] Initializing /data/josiah/cell-Z11.C0.tiff: [testng] [2024-04-04 01:23:45,957] [pool-1-thread-11] Initializing /data/big-images/4kx4k.tif: [testng] [2024-04-04 01:23:46,003] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z014.tif: [testng] [2024-04-04 01:23:46,034] [pool-1-thread-3] Initializing /data/ascb/bad/FND-21_FawcettPhillipsTransverse_4800.tif: [testng] [2024-04-04 01:23:46,079] [pool-1-thread-2] Initializing /data/carolyn/tumor_4.tif: [testng] [2024-04-04 01:23:46,231] [pool-1-thread-12] Initializing /data/imagesc-50416/_Fadeh_Alonzy_OD_Lower__M5_A8_F950nmD_I022_20130424115201.tiff: [testng] [2024-04-04 01:23:46,422] [pool-1-thread-1] Initializing /data/josiah/cell-Z6.C0.tiff: [testng] [2024-04-04 01:23:46,452] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C1_Z002.tif: [testng] [2024-04-04 01:23:46,550] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0224.TIF: [testng] [2024-04-04 01:23:46,737] [pool-1-thread-2] Initializing /data/kevino/_BF_00005.tif: [testng] [2024-04-04 01:23:46,878] [pool-1-thread-6] Initializing /data/qa-4968/twocars2.tif: [testng] [2024-04-04 01:23:47,249] [pool-1-thread-1] Initializing /data/josiah/cell-Z13.C0.tiff: [testng] [2024-04-04 01:23:47,732] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C0_Z012.tif: [testng] [2024-04-04 01:23:47,768] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z039.tif: [testng] [2024-04-04 01:23:47,836] [pool-1-thread-2] Initializing /data/josiah/cell-Z9.C0.tiff: [testng] [2024-04-04 01:23:48,055] [pool-1-thread-8] Initializing /data/chris-wood/ticket-10050/cjw_stowers.tif: [testng] [2024-04-04 01:23:48,125] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z004.tif: [testng] [2024-04-04 01:23:48,161] [pool-1-thread-1] Initializing /data/misc/mri-old.mov: [testng] [2024-04-04 01:23:48,341] [pool-1-thread-1] Initializing /data/ascb/14346-myc-p125A.tif: [testng] [2024-04-04 01:23:48,381] [pool-1-thread-2] Initializing /data/public/libtiff/ycbcr-cat.tif: [testng] [2024-04-04 01:23:48,471] [pool-1-thread-12] Initializing /data/josiah/cell-Z29.C1.tiff: [testng] [2024-04-04 01:23:49,018] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z017.tif: [testng] [2024-04-04 01:23:49,102] [pool-1-thread-1] Initializing /data/josiah/cell-Z22.C0.tiff: [testng] [2024-04-04 01:23:49,185] [pool-1-thread-12] Initializing /data/julien/MarjorieCoisy1.TIF: [testng] [2024-04-04 01:23:49,330] [pool-1-thread-2] Initializing /data/misc/wtembryo.tiff: [testng] [2024-04-04 01:23:49,627] [pool-1-thread-1] Initializing /data/wayne/northern-8bit.tif: [testng] [2024-04-04 01:23:49,778] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z003.tif: [testng] [2024-04-04 01:23:49,826] [pool-1-thread-6] Initializing /data/jcb/SuppFig5D.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 38213, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 50 seconds Finished: SUCCESS