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Started by upstream project "BIOFORMATS-test-repo" build number 2 originally caused by: Started by upstream project "Trigger" build number 3 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins440255178764049041.sh + '[' apng = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_261_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:44:43,474 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:44:43,476 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:44:43,476 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:44:43,477 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:44:43,477 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:44:43,477 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:44:43,478 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:44:43,478 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:44:43,478 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:44:43,479 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:44:43,479 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:44:43,479 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:44:43,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:44:43,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:44:43,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:44:43,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:44:43,777 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:44:43,778 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:44:43,778 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:44:43,778 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:44:43,778 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:44:43,779 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:44:43,779 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 301 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-15 01:44:43,789] [main] java.version = 1.8.0_342 [testng] 01:44:43,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:44:43,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:43,861 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-15_01-44-43.log] [testng] 01:44:43,866 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-03-15 01:44:43,868] [main] testng.directory = /data [testng] [2024-03-15 01:44:43,869] [main] testng.configDirectory = /config [testng] [2024-03-15 01:44:43,882] [main] testng.multiplier = 1.0 [testng] [2024-03-15 01:44:43,882] [main] testng.in-memory = false [testng] [2024-03-15 01:44:43,882] [main] testng.allow-missing = false [testng] [2024-03-15 01:44:43,882] [main] user.language = en [testng] [2024-03-15 01:44:43,882] [main] user.country = ${user.country} [testng] [2024-03-15 01:44:43,882] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-03-15 01:44:44,311] [main] ---------------------------------------- [testng] [2024-03-15 01:44:44,311] [main] Total files: 21 [testng] [2024-03-15 01:44:44,311] [main] Scan time: 0.428 s (20 ms/file) [testng] [2024-03-15 01:44:44,311] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-15 01:44:46,023] [pool-1-thread-1] Initializing /data/samples/Sun.png: [testng] 01:44:46,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:44:46,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:46,025 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-15_01-44-46.log] [testng] 01:44:46,025 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d02dd3b - End of configuration. [testng] [2024-03-15 01:44:46,086] [pool-1-thread-12] Initializing /data/samples/atom.png: [testng] 01:44:46,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:44:46,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:46,087 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-15_01-44-46.log] [testng] 01:44:46,087 |-INFO in ch.qos.logback.core.sift.SiftProcessor@371f6e5b - End of configuration. [testng] [2024-03-15 01:44:46,097] [pool-1-thread-11] Initializing /data/samples/orbit.png: [testng] 01:44:46,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:44:46,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:46,098 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-15_01-44-46.log] [testng] 01:44:46,099 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3522a6ff - End of configuration. [testng] [2024-03-15 01:44:46,109] [pool-1-thread-10] Initializing /data/samples/monkey_apng.png: [testng] 01:44:46,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:44:46,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:46,110 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-15_01-44-46.log] [testng] 01:44:46,111 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30ab4ee6 - End of configuration. [testng] [2024-03-15 01:44:46,123] [pool-1-thread-9] Initializing /data/qa-7473/x.png: [testng] 01:44:46,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:44:46,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:46,124 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-15_01-44-46.log] [testng] 01:44:46,125 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d84095c - End of configuration. [testng] [2024-03-15 01:44:46,134] [pool-1-thread-8] Initializing /data/samples/william_wong04.png: [testng] 01:44:46,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:44:46,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:46,136 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-15_01-44-46.log] [testng] 01:44:46,136 |-INFO in ch.qos.logback.core.sift.SiftProcessor@331b975c - End of configuration. [testng] [2024-03-15 01:44:46,146] [pool-1-thread-7] Initializing /data/samples/daniel_coltri_two.png: [testng] 01:44:46,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:44:46,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:46,147 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-15_01-44-46.log] [testng] 01:44:46,147 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68e5e1fb - End of configuration. [testng] [2024-03-15 01:44:46,157] [pool-1-thread-6] Initializing /data/qa-7473/n.tif: [testng] 01:44:46,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:44:46,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:46,158 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-15_01-44-46.log] [testng] 01:44:46,159 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12b4a65b - End of configuration. [testng] [2024-03-15 01:44:46,367] [pool-1-thread-5] Initializing /data/samples/MoonPhases.png: [testng] 01:44:46,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:44:46,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:46,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-15_01-44-46.log] [testng] 01:44:46,368 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39b93425 - End of configuration. [testng] [2024-03-15 01:44:46,376] [pool-1-thread-4] Initializing /data/samples/joanna_viera01.png: [testng] 01:44:46,376 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:44:46,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:46,377 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-15_01-44-46.log] [testng] 01:44:46,378 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ce2fd39 - End of configuration. [testng] [2024-03-15 01:44:46,385] [pool-1-thread-3] Initializing /data/samples/Matrix.png: [testng] 01:44:46,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:44:46,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:46,386 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-15_01-44-46.log] [testng] 01:44:46,387 |-INFO in ch.qos.logback.core.sift.SiftProcessor@527c2cfc - End of configuration. [testng] [2024-03-15 01:44:46,395] [pool-1-thread-2] Initializing /data/samples/phug_logo.png: [testng] 01:44:46,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:44:46,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:46,396 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-15_01-44-46.log] [testng] 01:44:46,396 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d626eb7 - End of configuration. [testng] [2024-03-15 01:44:47,658] [pool-1-thread-7] Initializing /data/samples/william_wong02.png: [testng] [2024-03-15 01:44:47,719] [pool-1-thread-4] Initializing /data/samples/chompy2.png: [testng] [2024-03-15 01:44:47,725] [pool-1-thread-9] Initializing /data/samples/StarV838.png: [testng] [2024-03-15 01:44:48,163] [pool-1-thread-12] Initializing /data/samples/PhugAnimation3.png: [testng] [2024-03-15 01:44:48,172] [pool-1-thread-2] Initializing /data/samples/spinfox.png: [testng] [2024-03-15 01:44:48,180] [pool-1-thread-8] Initializing /data/samples/william_wong01.png: [testng] [2024-03-15 01:44:48,189] [pool-1-thread-3] Initializing /data/samples/william_wong05.png: [testng] [2024-03-15 01:44:48,205] [pool-1-thread-5] Initializing /data/colin/test.sfstdge.png: [testng] [2024-03-15 01:44:48,226] [pool-1-thread-10] Initializing /data/samples/daniel_coltri_one.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 8 seconds Finished: SUCCESS