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Started by upstream project "BIOFORMATS-test-repo" build number 23 originally caused by: Started by upstream project "Trigger" build number 26 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins10735281176754886811.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_2761_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:20:28,550 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:20:28,552 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:20:28,552 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:28,553 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:28,553 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:20:28,553 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:20:28,553 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:20:28,553 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:28,554 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:28,554 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:20:28,554 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:20:28,554 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:20:28,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:20:28,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:20:28,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:20:28,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:20:28,801 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:20:28,801 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:20:28,801 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:20:28,802 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:20:28,802 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:20:28,802 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:20:28,803 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 249 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-05 01:20:28,812] [main] java.version = 1.8.0_342 [testng] 01:20:28,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:20:28,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:28,858 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-05_01-20-28.log] [testng] 01:20:28,859 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-05 01:20:28,861] [main] testng.directory = /data [testng] [2024-04-05 01:20:28,861] [main] testng.configDirectory = /config [testng] [2024-04-05 01:20:28,872] [main] testng.multiplier = 1.0 [testng] [2024-04-05 01:20:28,873] [main] testng.in-memory = false [testng] [2024-04-05 01:20:28,873] [main] testng.allow-missing = false [testng] [2024-04-05 01:20:28,873] [main] user.language = en [testng] [2024-04-05 01:20:28,873] [main] user.country = ${user.country} [testng] [2024-04-05 01:20:28,873] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-05 01:20:29,373] [main] ---------------------------------------- [testng] [2024-04-05 01:20:29,373] [main] Total files: 36 [testng] [2024-04-05 01:20:29,373] [main] Scan time: 0.5 s (13 ms/file) [testng] [2024-04-05 01:20:29,373] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-05 01:20:31,565] [pool-1-thread-1] Initializing /data/generated/mri-stack13.pcx: [testng] 01:20:31,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:20:31,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:31,567 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-05_01-20-31.log] [testng] 01:20:31,567 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58381f81 - End of configuration. [testng] [2024-04-05 01:20:31,606] [pool-1-thread-12] Initializing /data/generated/mri-stack23.pcx: [testng] 01:20:31,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:20:31,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:31,607 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-05_01-20-31.log] [testng] 01:20:31,607 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d57c7eb - End of configuration. [testng] [2024-04-05 01:20:31,611] [pool-1-thread-11] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] 01:20:31,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:20:31,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:31,612 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-05_01-20-31.log] [testng] 01:20:31,612 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28a7c1a9 - End of configuration. [testng] [2024-04-05 01:20:31,619] [pool-1-thread-10] Initializing /data/generated/mri-stack17.pcx: [testng] 01:20:31,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:20:31,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:31,620 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-05_01-20-31.log] [testng] 01:20:31,620 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a4a49ba - End of configuration. [testng] [2024-04-05 01:20:31,624] [pool-1-thread-9] Initializing /data/generated/mri-stack5.pcx: [testng] 01:20:31,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:20:31,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:31,625 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-05_01-20-31.log] [testng] 01:20:31,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@620644a8 - End of configuration. [testng] [2024-04-05 01:20:31,629] [pool-1-thread-8] Initializing /data/generated/mri-stack7.pcx: [testng] 01:20:31,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:20:31,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:31,630 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-05_01-20-31.log] [testng] 01:20:31,630 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2abd69b - End of configuration. [testng] [2024-04-05 01:20:31,633] [pool-1-thread-7] Initializing /data/generated/mri-stack11.pcx: [testng] 01:20:31,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:20:31,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:31,634 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-05_01-20-31.log] [testng] 01:20:31,634 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cfa8e5f - End of configuration. [testng] [2024-04-05 01:20:31,638] [pool-1-thread-6] Initializing /data/generated/mri-stack4.pcx: [testng] 01:20:31,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:20:31,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:31,639 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-05_01-20-31.log] [testng] 01:20:31,639 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19f7fd02 - End of configuration. [testng] [2024-04-05 01:20:31,642] [pool-1-thread-5] Initializing /data/generated/mri-stack15.pcx: [testng] 01:20:31,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:20:31,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:31,643 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-05_01-20-31.log] [testng] 01:20:31,643 |-INFO in ch.qos.logback.core.sift.SiftProcessor@559492d1 - End of configuration. [testng] [2024-04-05 01:20:31,648] [pool-1-thread-4] Initializing /data/generated/mri-stack2.pcx: [testng] 01:20:31,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:20:31,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:31,649 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-05_01-20-31.log] [testng] 01:20:31,649 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75c634d8 - End of configuration. [testng] [2024-04-05 01:20:31,654] [pool-1-thread-3] Initializing /data/generated/mri-stack18.pcx: [testng] 01:20:31,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:20:31,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:31,654 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-05_01-20-31.log] [testng] 01:20:31,654 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6db5885e - End of configuration. [testng] [2024-04-05 01:20:31,658] [pool-1-thread-2] Initializing /data/generated/mri-stack8.pcx: [testng] 01:20:31,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:20:31,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:31,659 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-05_01-20-31.log] [testng] 01:20:31,659 |-INFO in ch.qos.logback.core.sift.SiftProcessor@440b04a0 - End of configuration. [testng] [2024-04-05 01:20:33,261] [pool-1-thread-9] Initializing /data/generated/mri-stack3.pcx: [testng] [2024-04-05 01:20:33,264] [pool-1-thread-8] Initializing /data/generated/mri-stack22.pcx: [testng] [2024-04-05 01:20:33,268] [pool-1-thread-12] Initializing /data/generated/mri-stack20.pcx: [testng] [2024-04-05 01:20:33,271] [pool-1-thread-2] Initializing /data/generated/mri-stack19.pcx: [testng] [2024-04-05 01:20:33,274] [pool-1-thread-1] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2024-04-05 01:20:33,280] [pool-1-thread-6] Initializing /data/generated/mri-stack16.pcx: [testng] [2024-04-05 01:20:33,284] [pool-1-thread-5] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] [2024-04-05 01:20:33,291] [pool-1-thread-3] Initializing /data/generated/mri-stack1.pcx: [testng] [2024-04-05 01:20:33,295] [pool-1-thread-4] Initializing /data/generated/mri-stack24.pcx: [testng] [2024-04-05 01:20:33,297] [pool-1-thread-10] Initializing /data/generated/mri-stack21.pcx: [testng] [2024-04-05 01:20:33,300] [pool-1-thread-7] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2024-04-05 01:20:33,306] [pool-1-thread-11] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2024-04-05 01:20:33,572] [pool-1-thread-2] Initializing /data/generated/mri-stack25.pcx: [testng] [2024-04-05 01:20:33,575] [pool-1-thread-10] Initializing /data/generated/mri-stack26.pcx: [testng] [2024-04-05 01:20:33,577] [pool-1-thread-3] Initializing /data/generated/mri-stack9.pcx: [testng] [2024-04-05 01:20:33,617] [pool-1-thread-8] Initializing /data/generated/mri-stack6.pcx: [testng] [2024-04-05 01:20:33,624] [pool-1-thread-4] Initializing /data/generated/mri-stack12.pcx: [testng] [2024-04-05 01:20:33,627] [pool-1-thread-12] Initializing /data/generated/mri-stack14.pcx: [testng] [2024-04-05 01:20:33,629] [pool-1-thread-9] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] [2024-04-05 01:20:33,634] [pool-1-thread-6] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] [2024-04-05 01:20:33,740] [pool-1-thread-2] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [2024-04-05 01:20:33,745] [pool-1-thread-10] Initializing /data/generated/mri-stack0.pcx: [testng] [2024-04-05 01:20:33,748] [pool-1-thread-3] Initializing /data/generated/mri-stack10.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 8 seconds Finished: SUCCESS