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Started by upstream project "BIOFORMATS-test-repo" build number 23 originally caused by: Started by upstream project "Trigger" build number 26 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins17413405004519972961.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_2771_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:20:57,380 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:20:57,382 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:20:57,382 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:57,384 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:57,384 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:20:57,385 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:20:57,385 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:20:57,385 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:57,386 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:57,386 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:20:57,386 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:20:57,387 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:20:57,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:20:57,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:20:57,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:20:57,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:20:57,721 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:20:57,721 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:20:57,721 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:20:57,722 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:20:57,722 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:20:57,723 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:20:57,723 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 337 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-05 01:20:57,735] [main] java.version = 1.8.0_342 [testng] 01:20:57,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:20:57,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:57,794 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-05_01-20-57.log] [testng] 01:20:57,796 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-05 01:20:57,799] [main] testng.directory = /data [testng] [2024-04-05 01:20:57,800] [main] testng.configDirectory = /config [testng] [2024-04-05 01:20:57,815] [main] testng.multiplier = 1.0 [testng] [2024-04-05 01:20:57,816] [main] testng.in-memory = false [testng] [2024-04-05 01:20:57,816] [main] testng.allow-missing = false [testng] [2024-04-05 01:20:57,816] [main] user.language = en [testng] [2024-04-05 01:20:57,816] [main] user.country = ${user.country} [testng] [2024-04-05 01:20:57,816] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-05 01:21:17,772] [main] ---------------------------------------- [testng] [2024-04-05 01:21:17,772] [main] Total files: 283 [testng] [2024-04-05 01:21:17,772] [main] Scan time: 19.956 s (70 ms/file) [testng] [2024-04-05 01:21:17,772] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 186 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-05 01:29:58,209] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] 01:29:58,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:29:58,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:58,211 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-05_01-29-58.log] [testng] 01:29:58,212 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fe7ab9 - End of configuration. [testng] [2024-04-05 01:29:58,342] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] 01:29:58,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:29:58,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:58,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-05_01-29-58.log] [testng] 01:29:58,344 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59c72ee7 - End of configuration. [testng] [2024-04-05 01:29:58,427] [pool-1-thread-11] Initializing /data/qa-17335/Clipboard-1.tif: [testng] 01:29:58,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:29:58,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:58,428 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-05_01-29-58.log] [testng] 01:29:58,428 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d273491 - End of configuration. [testng] [2024-04-05 01:29:58,476] [pool-1-thread-10] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] 01:29:58,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:29:58,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:58,477 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-05_01-29-58.log] [testng] 01:29:58,478 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72ea0a65 - End of configuration. [testng] [2024-04-05 01:29:59,165] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] 01:29:59,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:29:59,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:59,166 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-05_01-29-59.log] [testng] 01:29:59,167 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1cba84e8 - End of configuration. [testng] [2024-04-05 01:29:59,216] [pool-1-thread-8] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] 01:29:59,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:29:59,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:59,218 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-05_01-29-59.log] [testng] 01:29:59,218 |-INFO in ch.qos.logback.core.sift.SiftProcessor@245e9a4e - End of configuration. [testng] [2024-04-05 01:29:59,289] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] 01:29:59,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:29:59,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:59,290 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-05_01-29-59.log] [testng] 01:29:59,290 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a434f56 - End of configuration. [testng] [2024-04-05 01:29:59,409] [pool-1-thread-6] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] 01:29:59,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:29:59,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:59,410 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-05_01-29-59.log] [testng] 01:29:59,410 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c6101f4 - End of configuration. [testng] [2024-04-05 01:29:59,477] [pool-1-thread-5] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] 01:29:59,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:29:59,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:59,478 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-05_01-29-59.log] [testng] 01:29:59,478 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dcdf425 - End of configuration. [testng] [2024-04-05 01:29:59,789] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] 01:29:59,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:29:59,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:59,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-05_01-29-59.log] [testng] 01:29:59,790 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a449ee1 - End of configuration. [testng] [2024-04-05 01:30:00,041] [pool-1-thread-3] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] 01:30:00,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:30:00,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:00,042 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-05_01-30-00.log] [testng] 01:30:00,042 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1eb6b0fc - End of configuration. [testng] [2024-04-05 01:30:00,059] [pool-1-thread-2] Initializing /data/qa-17331/60x zstack RS.oir: [testng] 01:30:00,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:30:00,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:00,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-05_01-30-00.log] [testng] 01:30:00,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18c5026f - End of configuration. [testng] [2024-04-05 01:30:02,568] [pool-1-thread-1] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-04-05 01:30:02,803] [pool-1-thread-8] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-04-05 01:30:02,856] [pool-1-thread-12] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-04-05 01:30:02,965] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-04-05 01:30:03,016] [pool-1-thread-11] Initializing /data/olympus/XYZt.vsi: [testng] [2024-04-05 01:30:03,047] [pool-1-thread-9] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-04-05 01:30:03,292] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-04-05 01:30:03,333] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-04-05 01:30:03,990] [pool-1-thread-3] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-04-05 01:30:04,308] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-04-05 01:30:04,541] [pool-1-thread-11] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-04-05 01:30:04,601] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-04-05 01:30:08,899] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-04-05 01:30:08,972] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-04-05 01:30:09,621] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-04-05 01:30:09,924] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-04-05 01:30:09,988] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-04-05 01:30:10,404] [pool-1-thread-6] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-04-05 01:30:10,628] [pool-1-thread-7] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-04-05 01:30:11,002] [pool-1-thread-12] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-04-05 01:30:11,574] [pool-1-thread-3] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-04-05 01:30:11,937] [pool-1-thread-11] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-04-05 01:30:12,067] [pool-1-thread-2] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-04-05 01:30:12,311] [pool-1-thread-6] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-04-05 01:30:12,589] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-04-05 01:30:12,869] [pool-1-thread-12] Initializing /data/qa-17922/example_multipart.oir: [testng] [2024-04-05 01:30:46,919] [pool-1-thread-9] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-04-05 01:30:47,426] [pool-1-thread-3] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-04-05 01:30:48,744] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-04-05 01:30:49,101] [pool-1-thread-7] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-04-05 01:30:49,188] [pool-1-thread-11] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-04-05 01:30:49,418] [pool-1-thread-1] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-04-05 01:30:49,875] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-04-05 01:30:49,923] [pool-1-thread-6] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-04-05 01:30:50,375] [pool-1-thread-5] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-04-05 01:30:50,503] [pool-1-thread-9] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-04-05 01:30:50,988] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-04-05 01:30:51,174] [pool-1-thread-1] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-04-05 01:30:52,701] [pool-1-thread-4] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-04-05 01:30:53,130] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-04-05 01:30:53,170] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-04-05 01:30:54,217] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-04-05 01:30:54,284] [pool-1-thread-2] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] [2024-04-05 01:30:55,767] [pool-1-thread-9] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-04-05 01:30:56,064] [pool-1-thread-10] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-04-05 01:30:56,142] [pool-1-thread-11] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-04-05 01:30:56,497] [pool-1-thread-6] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-04-05 01:30:56,620] [pool-1-thread-7] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-04-05 01:30:57,034] [pool-1-thread-5] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-04-05 01:30:57,505] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-04-05 01:30:58,056] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-04-05 01:30:58,382] [pool-1-thread-7] Initializing /data/qa-17919/f10187.oir: [testng] [2024-04-05 01:31:27,246] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-04-05 01:31:27,910] [pool-1-thread-11] Initializing /data/qa-17270/image1.oir: [testng] [2024-04-05 01:31:28,512] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-04-05 01:31:28,567] [pool-1-thread-5] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-04-05 01:31:28,686] [pool-1-thread-10] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-04-05 01:31:28,871] [pool-1-thread-9] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] [2024-04-05 01:31:29,138] [pool-1-thread-11] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-04-05 01:31:29,216] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-04-05 01:31:31,163] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2024-04-05 01:31:31,700] [pool-1-thread-3] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-04-05 01:31:32,571] [pool-1-thread-4] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-04-05 01:31:32,834] [pool-1-thread-5] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-04-05 01:31:32,932] [pool-1-thread-9] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-04-05 01:31:33,151] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-04-05 01:31:33,199] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-04-05 01:31:34,570] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] [2024-04-05 01:31:36,312] [pool-1-thread-11] Initializing 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/data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-04-05 01:31:59,433] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] [2024-04-05 01:32:01,627] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-04-05 01:32:03,143] [pool-1-thread-1] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] [2024-04-05 01:32:03,524] [pool-1-thread-9] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] [2024-04-05 01:32:04,919] [pool-1-thread-1] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2024-04-05 01:32:05,121] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-04-05 01:32:09,968] [pool-1-thread-3] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-04-05 01:32:26,722] [pool-1-thread-6] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-04-05 01:32:28,493] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2024-04-05 01:32:29,865] [pool-1-thread-4] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-04-05 01:32:29,958] [pool-1-thread-6] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2024-04-05 01:32:30,108] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-04-05 01:32:31,484] [pool-1-thread-2] Initializing /data/public/etienne/venus stack.ome.tif: [testng] [2024-04-05 01:32:32,152] [pool-1-thread-9] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-04-05 01:32:32,612] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-04-05 01:32:33,518] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-04-05 01:32:33,564] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] [2024-04-05 01:32:33,967] [pool-1-thread-6] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-04-05 01:32:38,800] [pool-1-thread-8] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-04-05 01:32:39,281] [pool-1-thread-4] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-04-05 01:32:40,120] [pool-1-thread-2] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-04-05 01:32:46,141] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-04-05 01:32:47,122] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] [2024-04-05 01:32:47,536] [pool-1-thread-8] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-04-05 01:32:51,727] [pool-1-thread-1] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-04-05 01:32:52,260] [pool-1-thread-9] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-04-05 01:32:53,630] [pool-1-thread-1] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-04-05 01:32:54,359] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-04-05 01:32:54,468] [pool-1-thread-9] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2024-04-05 01:32:55,082] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-04-05 01:32:55,717] [pool-1-thread-9] Initializing /data/qa-17917/f10010.oir: [testng] [2024-04-05 01:33:44,697] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-04-05 01:33:44,752] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-04-05 01:33:47,374] [pool-1-thread-1] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-04-05 01:34:01,216] [pool-1-thread-11] Initializing /data/qa-17335/1.oir: [testng] [2024-04-05 01:34:02,014] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-04-05 01:34:03,230] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-04-05 01:34:04,022] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-04-05 01:34:04,978] [pool-1-thread-11] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] [2024-04-05 01:34:06,158] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-04-05 01:34:07,372] [pool-1-thread-11] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-04-05 01:34:09,099] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-04-05 01:34:10,234] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-04-05 01:34:11,431] [pool-1-thread-11] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-04-05 01:34:25,264] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-04-05 01:34:39,934] [pool-1-thread-5] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-04-05 01:34:44,912] [pool-1-thread-2] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-04-05 01:34:44,958] [pool-1-thread-4] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-04-05 01:34:46,067] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-04-05 01:34:46,344] [pool-1-thread-4] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-04-05 01:34:48,802] [pool-1-thread-2] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2024-04-05 01:34:49,927] [pool-1-thread-2] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-04-05 01:34:54,482] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-04-05 01:34:55,122] [pool-1-thread-8] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-04-05 01:35:35,389] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-04-05 01:35:37,108] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-04-05 01:35:37,503] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-04-05 01:35:38,403] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-04-05 01:35:38,898] [pool-1-thread-10] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-04-05 01:35:39,779] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-04-05 01:35:41,122] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-04-05 01:35:41,597] [pool-1-thread-2] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-04-05 01:35:42,652] [pool-1-thread-10] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-04-05 01:35:43,992] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-04-05 01:35:44,526] [pool-1-thread-10] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-04-05 01:35:45,574] [pool-1-thread-2] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-04-05 01:35:48,091] [pool-1-thread-4] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-04-05 01:35:48,789] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-04-05 01:35:50,087] [pool-1-thread-10] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-04-05 01:35:50,360] [pool-1-thread-4] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-04-05 01:35:51,476] [pool-1-thread-10] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-04-05 01:35:59,814] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-04-05 01:36:01,157] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-04-05 01:36:01,603] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-04-05 01:36:02,198] [pool-1-thread-5] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-04-05 01:38:51,032] [pool-1-thread-2] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-04-05 01:39:20,829] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-04-05 01:39:21,560] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-04-05 01:39:22,811] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-04-05 01:39:24,458] [pool-1-thread-4] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-04-05 01:39:25,678] [pool-1-thread-4] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-04-05 01:39:27,128] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2024-04-05 01:39:28,072] [pool-1-thread-4] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-04-05 01:39:29,535] [pool-1-thread-4] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-04-05 01:39:35,296] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-04-05 01:39:44,702] [pool-1-thread-10] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-04-05 01:39:45,956] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-04-05 01:39:47,282] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-04-05 01:39:48,515] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-04-05 01:39:51,554] [pool-1-thread-10] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-04-05 01:39:58,190] [pool-1-thread-8] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-04-05 01:39:59,378] [pool-1-thread-8] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-04-05 01:40:00,778] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-04-05 01:40:05,191] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-04-05 01:40:06,159] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-04-05 01:40:06,803] [pool-1-thread-8] Initializing /data/qa-16871/Clipboard.tif: [testng] 02:30:05,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:30:05,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:30:05,947 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-05_02-30-05.log] [testng] 02:30:05,948 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76b06e50 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 9858, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 69 minutes 13 seconds Finished: SUCCESS