Started by upstream project "BIOFORMATS-test-repo" build number 23 originally caused by: Started by upstream project "Trigger" build number 26 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins9146206166730962172.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_2845_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:51:52,487 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:51:52,489 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:51:52,489 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:51:52,490 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:51:52,490 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:51:52,490 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:51:52,491 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:51:52,491 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:51:52,491 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:51:52,492 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:51:52,492 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:51:52,492 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:51:52,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:51:52,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:51:52,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:51:52,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:51:52,839 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:51:52,839 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:51:52,840 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:51:52,840 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:51:52,840 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:51:52,841 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:51:52,841 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 350 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-05 01:51:52,854] [main] java.version = 1.8.0_342 [testng] 01:51:52,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:51:52,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:52,914 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-05_01-51-52.log] [testng] 01:51:52,916 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-05 01:51:52,918] [main] testng.directory = /data [testng] [2024-04-05 01:51:52,919] [main] testng.configDirectory = /config [testng] [2024-04-05 01:51:52,934] [main] testng.multiplier = 1.0 [testng] [2024-04-05 01:51:52,934] [main] testng.in-memory = false [testng] [2024-04-05 01:51:52,934] [main] testng.allow-missing = false [testng] [2024-04-05 01:51:52,934] [main] user.language = en [testng] [2024-04-05 01:51:52,934] [main] user.country = ${user.country} [testng] [2024-04-05 01:51:52,934] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-05 02:00:27,743] [main] ---------------------------------------- [testng] [2024-04-05 02:00:27,743] [main] Total files: 7329 [testng] [2024-04-05 02:00:27,744] [main] Scan time: 514.809 s (70 ms/file) [testng] [2024-04-05 02:00:27,744] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-05 02:03:57,835] [pool-1-thread-1] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] 02:03:57,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:03:57,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:57,837 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-05_02-03-57.log] [testng] 02:03:57,837 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33334242 - End of configuration. [testng] [2024-04-05 02:03:57,892] [pool-1-thread-12] Initializing /data/samples/zserSixteen.stk: [testng] 02:03:57,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:03:57,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:57,893 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-05_02-03-57.log] [testng] 02:03:57,893 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62d89eb0 - End of configuration. [testng] [2024-04-05 02:03:57,927] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] 02:03:57,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:03:57,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:57,928 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-05_02-03-57.log] [testng] 02:03:57,928 |-INFO in ch.qos.logback.core.sift.SiftProcessor@651e4e49 - End of configuration. [testng] [2024-04-05 02:03:57,993] [pool-1-thread-10] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] 02:03:57,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:03:57,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:57,994 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-05_02-03-57.log] [testng] 02:03:57,994 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4437b62e - End of configuration. [testng] [2024-04-05 02:03:58,072] [pool-1-thread-9] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] 02:03:58,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:03:58,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:58,072 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-05_02-03-58.log] [testng] 02:03:58,073 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12cfa2a5 - End of configuration. [testng] [2024-04-05 02:03:58,203] [pool-1-thread-8] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] 02:03:58,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:03:58,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:58,204 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-05_02-03-58.log] [testng] 02:03:58,204 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b610310 - End of configuration. [testng] [2024-04-05 02:03:58,229] [pool-1-thread-7] Initializing /data/grant/XYZ_Image.STK: [testng] 02:03:58,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:03:58,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:58,230 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-05_02-03-58.log] [testng] 02:03:58,230 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f7622b7 - End of configuration. [testng] [2024-04-05 02:03:58,337] [pool-1-thread-6] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] 02:03:58,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:03:58,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:58,338 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-05_02-03-58.log] [testng] 02:03:58,338 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21bcd9f5 - End of configuration. [testng] [2024-04-05 02:03:58,439] [pool-1-thread-5] Initializing /data/ascb/C1 Stack.stk: [testng] 02:03:58,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:03:58,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:58,440 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-05_02-03-58.log] [testng] 02:03:58,440 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3209783b - End of configuration. [testng] [2024-04-05 02:03:58,476] [pool-1-thread-4] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] 02:03:58,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:03:58,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:58,477 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-05_02-03-58.log] [testng] 02:03:58,478 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dd8f277 - End of configuration. [testng] [2024-04-05 02:03:58,575] [pool-1-thread-3] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] 02:03:58,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:03:58,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:58,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-05_02-03-58.log] [testng] 02:03:58,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ffd6ad8 - End of configuration. [testng] [2024-04-05 02:03:58,705] [pool-1-thread-2] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] 02:03:58,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:03:58,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:58,706 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-05_02-03-58.log] [testng] 02:03:58,706 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5919e24f - End of configuration. [testng] [2024-04-05 02:04:01,413] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-04-05 02:04:01,983] [pool-1-thread-12] Initializing /data/josh/2101to600b.stk: [testng] [2024-04-05 02:04:03,084] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-04-05 02:04:03,367] [pool-1-thread-11] Initializing /data/samples/10xcalib.stk: [testng] [2024-04-05 02:04:03,401] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-04-05 02:04:03,470] [pool-1-thread-5] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-04-05 02:04:04,210] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-04-05 02:04:04,306] [pool-1-thread-7] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-04-05 02:04:04,509] [pool-1-thread-10] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-04-05 02:04:04,854] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-04-05 02:04:04,902] [pool-1-thread-7] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-04-05 02:04:05,156] [pool-1-thread-2] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-04-05 02:04:05,290] [pool-1-thread-6] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-04-05 02:04:05,389] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-04-05 02:04:05,431] [pool-1-thread-1] Used files list does not include base file [testng] [2024-04-05 02:04:05,798] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-04-05 02:04:06,173] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-04-05 02:04:06,392] [pool-1-thread-6] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-04-05 02:04:07,731] [pool-1-thread-2] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-04-05 02:04:08,229] [pool-1-thread-10] Initializing /data/steve/Experiment2.tif: [testng] [2024-04-05 02:04:08,691] [pool-1-thread-3] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-04-05 02:04:09,087] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-04-05 02:04:09,150] [pool-1-thread-11] Used files list does not include base file [testng] [2024-04-05 02:04:09,264] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-04-05 02:04:09,572] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-04-05 02:04:09,591] [pool-1-thread-3] Used files list does not include base file [testng] [2024-04-05 02:04:09,784] [pool-1-thread-1] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-04-05 02:04:09,982] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-04-05 02:04:10,009] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-04-05 02:04:10,117] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-04-05 02:04:10,172] [pool-1-thread-5] Used files list does not include base file [testng] [2024-04-05 02:04:10,184] [pool-1-thread-3] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-04-05 02:04:10,361] [pool-1-thread-8] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-04-05 02:04:10,613] [pool-1-thread-10] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-04-05 02:04:10,742] [pool-1-thread-2] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-04-05 02:04:11,236] [pool-1-thread-8] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2024-04-05 02:04:11,577] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-04-05 02:04:11,802] [pool-1-thread-3] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-04-05 02:04:12,003] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-04-05 02:04:12,036] [pool-1-thread-10] Used files list does not include base file [testng] [2024-04-05 02:04:12,202] [pool-1-thread-4] Initializing 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-04-05 02:04:21,914] [pool-1-thread-8] Initializing /data/josh/2101to800.stk: [testng] [2024-04-05 02:04:22,497] [pool-1-thread-7] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-04-05 02:04:22,687] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-04-05 02:04:22,735] [pool-1-thread-1] Initializing /data/jerome/deconv.STK: [testng] [2024-04-05 02:04:22,811] [pool-1-thread-2] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-04-05 02:04:23,271] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-04-05 02:04:23,436] [pool-1-thread-1] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-04-05 02:04:23,718] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-04-05 02:04:24,084] [pool-1-thread-9] Initializing /data/david/tl4.tif: [testng] [2024-04-05 02:04:25,165] [pool-1-thread-10] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-05 02:04:25,635] [pool-1-thread-11] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-04-05 02:04:27,350] [pool-1-thread-2] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-04-05 02:04:27,425] [pool-1-thread-7] Initializing /data/alex/Selected FITC.stk: [testng] [2024-04-05 02:04:27,778] [pool-1-thread-1] Initializing /data/josh/2101to400astk.stk: [testng] [2024-04-05 02:04:30,035] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-05 02:04:30,268] [pool-1-thread-7] Initializing /data/steve/Experiment2.stk: [testng] [2024-04-05 02:04:30,842] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-05 02:04:31,073] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-05 02:04:31,207] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-04-05 02:04:31,222] [pool-1-thread-5] Used files list does not include base file [testng] [2024-04-05 02:04:31,512] [pool-1-thread-10] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-04-05 02:04:32,355] [pool-1-thread-12] Initializing /data/jae/RGB_s34.tif: [testng] [2024-04-05 02:04:32,612] [pool-1-thread-5] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-04-05 02:04:34,084] [pool-1-thread-7] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-04-05 02:04:34,338] [pool-1-thread-8] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-04-05 02:04:34,726] [pool-1-thread-9] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-04-05 02:04:35,008] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-04-05 02:04:35,051] [pool-1-thread-8] Used files list does not include base file [testng] [2024-04-05 02:04:35,117] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-05 02:04:36,088] [pool-1-thread-8] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-04-05 02:04:36,571] [pool-1-thread-7] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-04-05 02:04:37,424] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-04-05 02:04:37,491] [pool-1-thread-8] Used files list does not include base file [testng] [2024-04-05 02:04:37,499] [pool-1-thread-12] Initializing 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02:04:46,103] [pool-1-thread-7] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-04-05 02:04:46,220] [pool-1-thread-9] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-04-05 02:04:46,395] [pool-1-thread-2] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-04-05 02:04:46,463] [pool-1-thread-12] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-04-05 02:04:46,778] [pool-1-thread-11] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-04-05 02:04:47,208] [pool-1-thread-7] Initializing /data/samples/diatoms3d.stk: [testng] [2024-04-05 02:04:47,601] [pool-1-thread-7] Initializing /data/qa-16915/m-02.tif: [testng] [2024-04-05 02:04:48,025] [pool-1-thread-12] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-04-05 02:04:48,108] [pool-1-thread-2] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-04-05 02:04:48,648] [pool-1-thread-12] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-04-05 02:04:50,523] [pool-1-thread-2] Initializing /data/qa-16915/m-04.tif: [testng] [2024-04-05 02:04:50,869] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-04-05 02:04:50,927] [pool-1-thread-9] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-04-05 02:04:52,328] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-05 02:04:52,491] [pool-1-thread-11] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-04-05 02:04:53,066] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-04-05 02:04:53,632] [pool-1-thread-11] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-04-05 02:04:54,250] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-04-05 02:04:54,370] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-04-05 02:04:54,969] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-04-05 02:04:56,687] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-04-05 02:04:56,730] [pool-1-thread-11] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-04-05 02:04:56,859] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-04-05 02:04:57,882] [pool-1-thread-9] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-04-05 02:04:57,946] [pool-1-thread-10] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-04-05 02:04:58,008] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] 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02:05:12,925] [pool-1-thread-9] Initializing /data/samples/10xcalib.tif: [testng] [2024-04-05 02:05:13,071] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-04-05 02:05:13,129] [pool-1-thread-5] Used files list does not include base file [testng] [2024-04-05 02:05:13,151] [pool-1-thread-8] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-04-05 02:05:13,747] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-04-05 02:05:16,704] [pool-1-thread-1] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-04-05 02:05:16,946] [pool-1-thread-8] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-04-05 02:05:17,094] [pool-1-thread-2] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-04-05 02:05:17,983] [pool-1-thread-10] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-04-05 02:05:19,060] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-04-05 02:05:19,598] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-04-05 02:05:19,704] [pool-1-thread-2] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-04-05 02:05:20,100] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-04-05 02:05:20,443] [pool-1-thread-10] Initializing /data/josh/2101to600e.stk: [testng] [2024-04-05 02:05:21,250] [pool-1-thread-2] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-04-05 02:05:21,454] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-04-05 02:05:21,660] [pool-1-thread-4] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-04-05 02:05:22,279] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-05 02:05:23,315] [pool-1-thread-11] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-04-05 02:05:23,383] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-05 02:05:23,452] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-04-05 02:05:23,522] [pool-1-thread-2] Used files list does not include base file [testng] [2024-04-05 02:05:23,524] [pool-1-thread-4] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-04-05 02:05:24,042] [pool-1-thread-8] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-04-05 02:05:24,404] [pool-1-thread-11] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-04-05 02:05:24,553] [pool-1-thread-5] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-04-05 02:05:25,139] [pool-1-thread-5] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-04-05 02:05:25,379] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-04-05 02:05:25,406] [pool-1-thread-4] Used files list does not include base file [testng] [2024-04-05 02:05:25,544] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-04-05 02:05:25,613] [pool-1-thread-3] Used files list does not include base file [testng] [2024-04-05 02:05:25,754] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-04-05 02:05:25,798] [pool-1-thread-8] Used files list does not include base file [testng] [2024-04-05 02:05:25,916] [pool-1-thread-4] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-04-05 02:05:26,435] [pool-1-thread-11] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-04-05 02:05:26,544] [pool-1-thread-10] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-04-05 02:05:26,843] [pool-1-thread-2] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-04-05 02:05:27,055] [pool-1-thread-11] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-04-05 02:05:27,163] [pool-1-thread-10] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-05 02:05:27,308] [pool-1-thread-4] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-04-05 02:05:27,549] [pool-1-thread-5] Initializing /data/ascb/mt aim.tif: [testng] [2024-04-05 02:05:27,893] [pool-1-thread-11] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-04-05 02:05:28,569] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-04-05 02:05:28,626] [pool-1-thread-5] Used files list does not include base file [testng] [2024-04-05 02:05:28,810] [pool-1-thread-3] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-04-05 02:05:29,013] [pool-1-thread-8] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-04-05 02:05:29,072] [pool-1-thread-2] Initializing /data/samples/zser24.stk: [testng] [2024-04-05 02:05:29,098] [pool-1-thread-1] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-04-05 02:05:29,170] [pool-1-thread-10] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-04-05 02:05:29,584] [pool-1-thread-4] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-04-05 02:05:29,819] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-05 02:05:30,423] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-04-05 02:05:30,738] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-04-05 02:05:30,817] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-04-05 02:05:31,312] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-04-05 02:05:31,574] [pool-1-thread-8] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-04-05 02:05:49,259] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-04-05 02:05:49,337] [pool-1-thread-5] Used files list does not include base file [testng] [2024-04-05 02:05:49,383] [pool-1-thread-2] Initializing /data/thomas/t_test2001.tif: [testng] [2024-04-05 02:05:49,574] [pool-1-thread-1] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-04-05 02:05:49,654] [pool-1-thread-3] Initializing /data/grant/X.STK: [testng] [2024-04-05 02:05:49,808] [pool-1-thread-10] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-04-05 02:05:50,892] [pool-1-thread-2] Initializing /data/qa-16915/m-01.tif: [testng] [2024-04-05 02:05:52,801] [pool-1-thread-9] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-04-05 02:05:54,987] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-04-05 02:05:56,015] [pool-1-thread-10] Initializing /data/aaron/metamorph.stk: [testng] [2024-04-05 02:05:56,339] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-04-05 02:05:56,915] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-04-05 02:05:58,388] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-05 02:05:58,502] [pool-1-thread-3] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-04-05 02:05:58,687] [pool-1-thread-4] Initializing /data/thomas/test.tif: [testng] [2024-04-05 02:05:58,921] [pool-1-thread-10] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-04-05 02:06:00,180] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-04-05 02:06:00,485] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-04-05 02:06:01,062] [pool-1-thread-4] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-04-05 02:06:01,316] [pool-1-thread-1] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-04-05 02:06:01,586] [pool-1-thread-3] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-04-05 02:06:01,930] [pool-1-thread-10] Initializing /data/qa-16887/m-01.tif: [testng] [2024-04-05 02:06:03,562] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 22 minutes 42 seconds Finished: SUCCESS