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Started by upstream project "BIOFORMATS-test-repo" build number 179 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins17550845140494347984.sh + '[' nikon-jp2 = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_28498_merge_ci -v /uod/idr/repos/curated/nikon-jp2:/data -v /uod/idr-scratch/merge-ci/curated/nikon-jp2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 16:10:47,761 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 16:10:47,763 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 16:10:47,763 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 16:10:47,765 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 16:10:47,765 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 16:10:47,765 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 16:10:47,766 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 16:10:47,766 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 16:10:47,766 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 16:10:47,766 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 16:10:47,766 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 16:10:47,767 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 16:10:48,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 16:10:48,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 16:10:48,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 16:10:48,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 16:10:48,098 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 16:10:48,098 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 16:10:48,099 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 16:10:48,099 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 16:10:48,100 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 16:10:48,101 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 16:10:48,101 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 335 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-09 16:10:48,113] [main] java.version = 1.8.0_342 [testng] 16:10:48,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 16:10:48,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:10:48,172 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-09_16-10-48.log] [testng] 16:10:48,175 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-09-09 16:10:48,177] [main] testng.directory = /data [testng] [2024-09-09 16:10:48,177] [main] testng.configDirectory = /config [testng] [2024-09-09 16:10:48,192] [main] testng.multiplier = 1.0 [testng] [2024-09-09 16:10:48,193] [main] testng.in-memory = false [testng] [2024-09-09 16:10:48,194] [main] testng.allow-missing = false [testng] [2024-09-09 16:10:48,194] [main] user.language = fr [testng] [2024-09-09 16:10:48,194] [main] user.country = FR [testng] [2024-09-09 16:10:48,194] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-09-09 16:10:49,281] [main] ---------------------------------------- [testng] [2024-09-09 16:10:49,282] [main] Total files: 11 [testng] [2024-09-09 16:10:49,282] [main] Scan time: 1.087 s (98 ms/file) [testng] [2024-09-09 16:10:49,282] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 11 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-09 16:10:52,393] [pool-1-thread-1] Initializing /data/kira/DapiFitcTexRed008B.tif: [testng] 16:10:52,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 16:10:52,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:10:52,395 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-09_16-10-52.log] [testng] 16:10:52,395 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58d5ad4b - End of configuration. [testng] [2024-09-09 16:10:52,627] [pool-1-thread-11] Initializing /data/kira/DapiFitcTexRed005.bmp: [testng] 16:10:52,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 16:10:52,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:10:52,631 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-09_16-10-52.log] [testng] 16:10:52,631 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fca425c - End of configuration. [testng] [2024-09-09 16:10:52,695] [pool-1-thread-10] Initializing /data/kira/DapiFitcTexRed003.jpg: [testng] 16:10:52,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 16:10:52,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:10:52,696 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-09_16-10-52.log] [testng] 16:10:52,697 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5559485c - End of configuration. [testng] [2024-09-09 16:10:52,779] [pool-1-thread-9] Initializing /data/kira/DapiFitcTexRed008BGR.tif: [testng] 16:10:52,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 16:10:52,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:10:52,780 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-09_16-10-52.log] [testng] 16:10:52,780 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79a03047 - End of configuration. [testng] [2024-09-09 16:10:52,940] [pool-1-thread-8] Initializing /data/kira/DapiFitcTexRed001.jp2: [testng] 16:10:52,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 16:10:52,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:10:52,940 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-09_16-10-52.log] [testng] 16:10:52,941 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70a9b204 - End of configuration. [testng] [2024-09-09 16:10:53,118] [pool-1-thread-7] Initializing /data/kira/DapiFitcTexRed008G.tif: [testng] 16:10:53,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 16:10:53,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:10:53,119 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-09_16-10-53.log] [testng] 16:10:53,120 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7822881f - End of configuration. [testng] [2024-09-09 16:10:53,263] [pool-1-thread-6] Initializing /data/kira/DapiFitcTexRed007.gif: [testng] 16:10:53,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 16:10:53,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:10:53,264 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-09_16-10-53.log] [testng] 16:10:53,264 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ba4a62f - End of configuration. [testng] [2024-09-09 16:10:53,298] [pool-1-thread-5] Initializing /data/kira/DapiFitcTexRed008.jp2: [testng] 16:10:53,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 16:10:53,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:10:53,299 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-09_16-10-53.log] [testng] 16:10:53,299 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e8e71ed - End of configuration. [testng] [2024-09-09 16:10:53,468] [pool-1-thread-4] Initializing /data/kira/DapiFitcTexRed006.png: [testng] 16:10:53,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 16:10:53,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:10:53,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-09_16-10-53.log] [testng] 16:10:53,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72de0aa5 - End of configuration. [testng] [2024-09-09 16:10:53,487] [pool-1-thread-3] Initializing /data/kira/DapiFitcTexRed004.tif: [testng] 16:10:53,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 16:10:53,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:10:53,488 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-09_16-10-53.log] [testng] 16:10:53,488 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74386b1d - End of configuration. [testng] [2024-09-09 16:10:53,722] [pool-1-thread-2] Initializing /data/kira/DapiFitcTexRed008R.tif: [testng] 16:10:53,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 16:10:53,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:10:53,724 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-09_16-10-53.log] [testng] 16:10:53,724 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35009375 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 583, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 seconds Finished: SUCCESS