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Started by upstream project "BIOFORMATS-test-repo" build number 181 originally caused by: Started by upstream project "Trigger" build number 202 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins9078249085776001912.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_28528_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 06:55:26,752 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 06:55:26,755 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 06:55:26,755 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:55:26,756 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:55:26,756 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:55:26,757 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:55:26,757 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:55:26,757 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:55:26,758 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:55:26,759 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:55:26,759 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:55:26,759 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:55:26,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:55:26,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:55:27,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:55:27,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:55:27,016 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:55:27,017 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:55:27,017 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:55:27,017 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:55:27,018 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 06:55:27,019 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 06:55:27,019 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 261 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-10 06:55:27,031] [main] java.version = 11.0.16 [testng] 06:55:27,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:55:27,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:55:27,099 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-10_06-55-27.log] [testng] 06:55:27,101 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-09-10 06:55:27,104] [main] testng.directory = /data [testng] [2024-09-10 06:55:27,104] [main] testng.configDirectory = /config [testng] [2024-09-10 06:55:27,115] [main] testng.multiplier = 1.0 [testng] [2024-09-10 06:55:27,117] [main] testng.in-memory = false [testng] [2024-09-10 06:55:27,117] [main] testng.allow-missing = false [testng] [2024-09-10 06:55:27,117] [main] user.language = en [testng] [2024-09-10 06:55:27,117] [main] user.country = ${user.country} [testng] [2024-09-10 06:55:27,117] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-10 06:56:03,990] [main] ---------------------------------------- [testng] [2024-09-10 06:56:03,991] [main] Total files: 4426 [testng] [2024-09-10 06:56:03,991] [main] Scan time: 36.873 s (8 ms/file) [testng] [2024-09-10 06:56:03,991] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 722 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-10 06:58:45,175] [pool-1-thread-1] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x32.tiff: [testng] 06:58:45,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:58:45,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:58:45,179 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-10_06-58-45.log] [testng] 06:58:45,179 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f6d84a8 - End of configuration. [testng] [2024-09-10 06:58:45,265] [pool-1-thread-12] Initializing /data/paulh/quickpollen4_w1_t1.tif: [testng] 06:58:45,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:58:45,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:58:45,266 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-10_06-58-45.log] [testng] 06:58:45,267 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f0c9179 - End of configuration. [testng] [2024-09-10 06:58:45,372] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z024.tif: [testng] 06:58:45,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:58:45,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:58:45,373 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-10_06-58-45.log] [testng] 06:58:45,373 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76525d00 - End of configuration. [testng] [2024-09-10 06:58:45,416] [pool-1-thread-10] Initializing /data/brian/CurrentSystems.tiff: [testng] 06:58:45,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:58:45,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:58:45,417 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-10_06-58-45.log] [testng] 06:58:45,418 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fe4820f - End of configuration. [testng] [2024-09-10 06:58:45,466] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0257.TIF: [testng] 06:58:45,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:58:45,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:58:45,467 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-10_06-58-45.log] [testng] 06:58:45,467 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c6c8ac3 - End of configuration. [testng] [2024-09-10 06:58:45,560] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z048.tif: [testng] 06:58:45,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:58:45,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:58:45,562 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-10_06-58-45.log] [testng] 06:58:45,562 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b2f0254 - End of configuration. [testng] [2024-09-10 06:58:45,599] [pool-1-thread-7] Initializing /data/ascb/FND-22_FawcettLongitudinalMammalian_4800.tif: [testng] 06:58:45,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:58:45,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:58:45,600 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-10_06-58-45.log] [testng] 06:58:45,601 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27368a91 - End of configuration. [testng] [2024-09-10 06:58:45,713] [pool-1-thread-6] Initializing /data/public/libtiff/quad-tile.tif: [testng] 06:58:45,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:58:45,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:58:45,715 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-10_06-58-45.log] [testng] 06:58:45,715 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f7a801b - End of configuration. [testng] [2024-09-10 06:58:45,757] [pool-1-thread-5] Initializing /data/brian/MFGTMP_080902150001t001B02f73d1.TIF: [testng] 06:58:45,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:58:45,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:58:45,758 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-10_06-58-45.log] [testng] 06:58:45,758 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b0aa6a8 - End of configuration. [testng] [2024-09-10 06:58:45,858] [pool-1-thread-4] Initializing /data/josiah/cell-Z18.C0.tiff: [testng] 06:58:45,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 06:58:45,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:58:45,859 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-10_06-58-45.log] [testng] 06:58:45,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2808edf1 - End of configuration. [testng] [2024-09-10 06:58:45,984] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C0_Z036.tif: [testng] 06:58:45,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:58:45,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:58:45,985 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-10_06-58-45.log] [testng] 06:58:45,985 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fa20c79 - End of configuration. [testng] [2024-09-10 06:58:46,034] [pool-1-thread-2] Initializing /data/jay/10-crop-Stack.tif: [testng] 06:58:46,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:58:46,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:58:46,035 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-10_06-58-46.log] [testng] 06:58:46,035 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4916f1da - End of configuration. [testng] [2024-09-10 06:58:48,700] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x16.tiff: [testng] [2024-09-10 06:58:48,733] [pool-1-thread-1] Initializing /data/public/condensation/E4.pattern9.tif: [testng] [2024-09-10 06:58:48,799] [pool-1-thread-8] Initializing /data/josiah/cell-Z21.C0.tiff: [testng] [2024-09-10 06:58:48,843] [pool-1-thread-11] Initializing /data/samples/melissa/strike-uncompressed.tiff: [testng] [2024-09-10 06:58:48,879] [pool-1-thread-6] Initializing /data/josiah/cell-Z17.C1.tiff: [testng] [2024-09-10 06:58:48,928] [pool-1-thread-4] Initializing /data/big-images/8kx8k.tif: [testng] [2024-09-10 06:58:49,043] [pool-1-thread-12] Initializing /data/julien/AVECCHRO.TIF: [testng] [2024-09-10 06:58:49,141] [pool-1-thread-3] Initializing /data/kevino/_BF_00002.tif: [testng] [2024-09-10 06:58:49,206] [pool-1-thread-2] Initializing /data/josiah/cell-Z11.C0.tiff: [testng] [2024-09-10 06:58:49,261] [pool-1-thread-10] Initializing /data/brian/retina/retina_C1_Z042.tif: [testng] [2024-09-10 06:58:49,349] [pool-1-thread-5] Initializing /data/josiah/cell-Z7.C1.tiff: [testng] [2024-09-10 06:58:50,341] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z043.tif: [testng] [2024-09-10 06:58:50,539] [pool-1-thread-10] Initializing /data/brian/PlantCell/PlantCell_C1_Z009.tif: [testng] [2024-09-10 06:58:50,663] [pool-1-thread-11] Initializing /data/koen/nt3_cortex_rots_thresh45.tif: [testng] [2024-09-10 06:58:50,725] [pool-1-thread-12] Initializing /data/public/libtiff/quad-jpeg.tif: [testng] [2024-09-10 06:58:50,769] [pool-1-thread-8] Initializing /data/josiah/cell-Z37.C0.tiff: [testng] [2024-09-10 06:58:50,814] [pool-1-thread-1] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x32.tiff: [testng] [2024-09-10 06:58:50,866] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z050.tif: [testng] [2024-09-10 06:58:50,910] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C0_Z019.tif: [testng] [2024-09-10 06:58:50,948] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0214.TIF: [testng] [2024-09-10 06:58:51,010] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0234.TIF: [testng] [2024-09-10 06:58:51,392] [pool-1-thread-9] Initializing /data/wayne/screen-rgb.tiff: [testng] [2024-09-10 06:58:51,549] [pool-1-thread-10] Initializing /data/wayne/MyoblastCells-8bit.tiff: [testng] [2024-09-10 06:58:51,741] [pool-1-thread-1] Initializing /data/imagesc-82872/WT_Uninfected_top_right.tiff: [testng] [2024-09-10 06:58:52,188] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z057.tif: [testng] [2024-09-10 06:58:52,409] [pool-1-thread-5] Initializing /data/public/libtiff/jello.tif: [testng] [2024-09-10 06:58:52,445] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C0_Z033.tif: [testng] [2024-09-10 06:58:52,493] [pool-1-thread-8] Initializing /data/ascb/CYT-93_PasolliMouse1c_4800.tif: [testng] [2024-09-10 06:58:52,570] [pool-1-thread-12] Initializing /data/tom-kazimiers/test_exiftool2.tiff: [testng] [2024-09-10 06:58:53,001] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z007.tif: [testng] [2024-09-10 06:58:53,069] [pool-1-thread-6] Initializing /data/harvey/NR_Giemsa_Sag_CTb_Retina_02.tif: [testng] [2024-09-10 06:58:53,180] [pool-1-thread-9] Initializing /data/josiah/cell-Z7.C0.tiff: [testng] [2024-09-10 06:58:53,493] [pool-1-thread-10] Initializing /data/public/condensation/B12.pattern4.tif: [testng] [2024-09-10 06:58:53,608] [pool-1-thread-7] Initializing /data/victoria/scan4_1hr_20X_.352g_n180p_2z_0.387644res_9int_C2_TP1.tiff: [testng] [2024-09-10 06:58:53,718] [pool-1-thread-5] Initializing /data/tom/TLD - n000000_Stamp.tif: [testng] [2024-09-10 06:58:53,778] [pool-1-thread-3] Initializing /data/lzw/BoutonVsAxon.tif: [testng] [2024-09-10 06:58:53,851] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z009.tif: [testng] [2024-09-10 06:58:53,895] 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[pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0254.TIF: [testng] [2024-09-10 06:59:43,671] [pool-1-thread-10] Initializing /data/martin/head.tif: [testng] [2024-09-10 06:59:43,752] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C1_Z005.tif: [testng] [2024-09-10 06:59:43,830] [pool-1-thread-9] Initializing /data/misc/9 h test.tif: [testng] [2024-09-10 06:59:44,260] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-02.tiff: [testng] [2024-09-10 06:59:44,388] [pool-1-thread-1] Initializing /data/qa-4968/twocars2.tif: [testng] [2024-09-10 06:59:45,113] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z020.tif: [testng] [2024-09-10 06:59:45,272] [pool-1-thread-2] Initializing /data/josh/NESb_C2_TP8.tiff: [testng] [2024-09-10 06:59:45,353] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C0_Z000.tif: [testng] [2024-09-10 06:59:45,394] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0227.TIF: 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[testng] [2024-09-10 06:59:59,899] [pool-1-thread-7] Initializing /data/julien/RobertOrti.TIF: [testng] [2024-09-10 07:00:00,354] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z017.tif: [testng] [2024-09-10 07:00:00,631] [pool-1-thread-2] Initializing /data/public/condensation/A5.pattern2.tif: [testng] [2024-09-10 07:00:00,879] [pool-1-thread-9] Initializing /data/ascb/CYT-2_BaintonBoylesPhagocytosisYeastB_4800.tif: [testng] [2024-09-10 07:00:01,277] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C1_Z011.tif: [testng] [2024-09-10 07:00:01,466] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z038.tif: [testng] [2024-09-10 07:00:01,527] [pool-1-thread-5] Initializing /data/josh/NESb_C2_TP9.tiff: [testng] [2024-09-10 07:00:01,667] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z023.tif: [testng] [2024-09-10 07:00:01,821] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z050.tif: [testng] [2024-09-10 07:00:02,650] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z053.tif: [testng] [2024-09-10 07:00:02,742] [pool-1-thread-2] Initializing /data/josiah/cell-Z17.C0.tiff: [testng] [2024-09-10 07:00:02,818] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z002.tif: [testng] [2024-09-10 07:00:03,030] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z025.tif: [testng] [2024-09-10 07:00:03,094] [pool-1-thread-4] Initializing /data/harvey/NR_Giemsa_Sag_CTb_Retina.tif: [testng] [2024-09-10 07:00:03,555] [pool-1-thread-11] Initializing /data/qa-20514/819_2.tif: [testng] [2024-09-10 07:00:03,757] [pool-1-thread-6] Initializing /data/michael/MFISH.tiff: [testng] [2024-09-10 07:00:03,879] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C1_Z012.tif: [testng] [2024-09-10 07:00:04,172] [pool-1-thread-7] Initializing /data/josh/NESb_C2_TP4.tiff: [testng] [2024-09-10 07:00:04,333] [pool-1-thread-5] Initializing /data/misc/ms-paint.png: [testng] [2024-09-10 07:00:04,506] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0210.TIF: [testng] [2024-09-10 07:00:05,046] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z037.tif: [testng] [2024-09-10 07:00:05,532] [pool-1-thread-5] Initializing /data/josh/NESb_C2_TP2.tiff: [testng] [2024-09-10 07:00:05,669] [pool-1-thread-11] Initializing /data/ascb/FND-27_PaladeGolgi_4800.tif: [testng] [2024-09-10 07:00:05,835] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C0_Z030.tif: [testng] [2024-09-10 07:00:06,090] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C1_Z027.tif: [testng] [2024-09-10 07:00:06,201] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z023.tif: [testng] [2024-09-10 07:00:06,616] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z047.tif: [testng] [2024-09-10 07:00:06,666] [pool-1-thread-7] Initializing /data/damian/09m.tiff: [testng] [2024-09-10 07:00:06,864] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z007.tif: [testng] [2024-09-10 07:00:06,924] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z013.tif: [testng] [2024-09-10 07:00:07,086] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0223.TIF: [testng] [2024-09-10 07:00:07,368] [pool-1-thread-4] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs003.TIF: [testng] [2024-09-10 07:00:07,524] [pool-1-thread-7] Initializing /data/josiah/cell-Z20.C0.tiff: [testng] [2024-09-10 07:00:07,777] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0258.TIF: [testng] [2024-09-10 07:00:07,864] [pool-1-thread-6] Initializing /data/josiah/cell-Z9.C1.tiff: [testng] [2024-09-10 07:00:07,906] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C0_Z016.tif: [testng] [2024-09-10 07:00:08,449] [pool-1-thread-12] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-32.tiff: [testng] [2024-09-10 07:00:08,498] [pool-1-thread-7] Initializing 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07:00:09,635] [pool-1-thread-2] Initializing /data/josiah/cell-Z2.C0.tiff: [testng] [2024-09-10 07:00:10,083] [pool-1-thread-12] Initializing /data/ascb/CYT-49_FriendSecretoryPair_4800.tif: [testng] [2024-09-10 07:00:10,236] [pool-1-thread-6] Initializing /data/jeff/test36b.tif: [testng] [2024-09-10 07:00:10,345] [pool-1-thread-7] Initializing /data/wayne/Rockies-48bit-rgb.tif: [testng] [2024-09-10 07:00:10,409] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C0_Z007.tif: [testng] [2024-09-10 07:00:10,489] [pool-1-thread-9] Initializing /data/chris-wood/15ms full low light.tif: [testng] [2024-09-10 07:00:10,597] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z040.tif: [testng] [2024-09-10 07:00:10,884] [pool-1-thread-5] Initializing /data/josiah/cell-Z6.C1.tiff: [testng] [2024-09-10 07:00:10,918] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z015.tif: [testng] [2024-09-10 07:00:11,203] [pool-1-thread-4] Initializing /data/paulh/quickpollen4_w3_t1.tif: [testng] [2024-09-10 07:00:11,338] [pool-1-thread-2] Initializing /data/josiah/cell-Z28.C1.tiff: [testng] [2024-09-10 07:00:11,620] [pool-1-thread-6] Initializing /data/jonathan/Cut-1_001.tif: [testng] [2024-09-10 07:00:11,801] [pool-1-thread-5] Initializing /data/josh/jnb1s1_raw0219.TIF: [testng] [2024-09-10 07:00:12,029] [pool-1-thread-7] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs014.TIF: [testng] [2024-09-10 07:00:12,288] [pool-1-thread-2] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-60.tiff: [testng] [2024-09-10 07:00:12,400] [pool-1-thread-4] Initializing /data/public/condensation/B12.pattern5.tif: [testng] [2024-09-10 07:00:12,860] [pool-1-thread-2] Initializing /data/josiah/cell-Z12.C0.tiff: [testng] [2024-09-10 07:00:12,928] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z045.tif: [testng] [2024-09-10 07:00:12,962] [pool-1-thread-11] Initializing /data/public/condensation/C4.pattern3.tif: [testng] [2024-09-10 07:00:13,454] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z062.tif: [testng] [2024-09-10 07:00:13,505] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z028.tif: [testng] [2024-09-10 07:00:13,539] [pool-1-thread-10] Initializing /data/damian/damian.tif: [testng] [2024-09-10 07:00:13,759] [pool-1-thread-2] Initializing /data/josiah/cell-Z20.C1.tiff: [testng] [2024-09-10 07:00:13,839] [pool-1-thread-7] Initializing /data/samples/melissa/imagej-units/1000cmx1000cm-test.tif: [testng] [2024-09-10 07:00:14,034] [pool-1-thread-11] Initializing /data/ascb/CYT-151_Raben_Noncontractile.tif: [testng] [2024-09-10 07:00:14,112] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C1_Z023.tif: [testng] [2024-09-10 07:00:14,210] [pool-1-thread-6] Initializing /data/ascb/FND-10_PorterMitochondria_4800.tif: [testng] [2024-09-10 07:00:17,366] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C0_Z027.tif: [testng] [2024-09-10 07:00:17,621] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z015.tif: [testng] [2024-09-10 07:00:17,701] [pool-1-thread-12] Initializing /data/josiah/cell-Z29.C0.tiff: [testng] [2024-09-10 07:00:17,982] [pool-1-thread-7] Initializing /data/stephane/Copy of listeria + clathrin1_w3Cy5.tif: [testng] [2024-09-10 07:00:18,065] [pool-1-thread-2] Initializing /data/big-images/2kx2k.tif: [testng] [2024-09-10 07:00:18,148] [pool-1-thread-10] Initializing /data/curtis/clown.tif: [testng] [2024-09-10 07:00:18,250] [pool-1-thread-5] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs002.TIF: [testng] [2024-09-10 07:00:18,620] [pool-1-thread-4] Initializing /data/andrew/wibble-tmp4.tiff: [testng] [2024-09-10 07:00:18,690] [pool-1-thread-9] Initializing /data/josiah/cell-Z19.C1.tiff: [testng] [2024-09-10 07:00:18,762] [pool-1-thread-12] Initializing /data/ascb/bad/CYT-76_PasolliMouse1_4800.tif: [testng] [2024-09-10 07:00:19,199] [pool-1-thread-10] Initializing /data/wayne/mBoeglin_lzw/mm_7.1.2.0.tif: [testng] [2024-09-10 07:00:19,293] [pool-1-thread-4] Initializing /data/curtis/test2.tiff: [testng] [2024-09-10 07:00:19,461] [pool-1-thread-9] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs017.TIF: [testng] [2024-09-10 07:00:19,556] [pool-1-thread-1] Initializing /data/ascb/CYT-23_BaintonGlycogenB_4800.tif: [testng] [2024-09-10 07:00:22,913] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C0_Z013.tif: [testng] [2024-09-10 07:00:22,996] [pool-1-thread-7] Initializing /data/tom-kazimiers/test_exiftool2_resave2.tiff: [testng] [2024-09-10 07:00:23,200] [pool-1-thread-5] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x32.tiff: [testng] [2024-09-10 07:00:23,746] [pool-1-thread-7] Initializing /data/curtis/imagesEight.tiff: [testng] [2024-09-10 07:00:23,906] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z033.tif: [testng] [2024-09-10 07:00:23,946] [pool-1-thread-4] Initializing /data/josh/jnb1s1_raw0247.TIF: [testng] [2024-09-10 07:00:24,089] [pool-1-thread-2] Initializing /data/curtis/map/the-quick: [testng] [2024-09-10 07:00:24,463] [pool-1-thread-9] Initializing /data/lzw/test.tif: [testng] [2024-09-10 07:00:25,756] [pool-1-thread-7] Initializing /data/josiah/cell-Z36.C1.tiff: [testng] [2024-09-10 07:00:25,919] [pool-1-thread-5] Initializing /data/tobias/test002_1.tif: [testng] [2024-09-10 07:00:26,112] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z008.tif: time="2024-09-10T06:00:26Z" level=error msg="error waiting for container: unexpected EOF" Build step 'Execute shell' marked build as failure Finished: FAILURE