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Started by upstream project "BIOFORMATS-test-repo" build number 182 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins5520980021878554258.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_28681_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 08:38:20,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:38:20,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:38:20,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:38:20,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:38:20,973 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:38:20,973 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:38:20,973 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:38:20,974 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:38:20,974 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@41a0aa7d - End of configuration. [testng] 08:38:20,974 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6574a52c - Registering current configuration as safe fallback point [testng] 08:38:20,975 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c1a5b54 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 472 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-10 08:38:20,984] [main] java.version = 11.0.16 [testng] 08:38:20,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:38:20,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:38:21,230 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-10_08-38-21.log] [testng] 08:38:21,243 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-09-10 08:38:21,287] [main] testng.directory = /data [testng] [2024-09-10 08:38:21,288] [main] testng.configDirectory = /config [testng] [2024-09-10 08:38:21,347] [main] testng.multiplier = 1.0 [testng] [2024-09-10 08:38:21,349] [main] testng.in-memory = false [testng] [2024-09-10 08:38:21,349] [main] testng.allow-missing = false [testng] [2024-09-10 08:38:21,350] [main] user.language = en [testng] [2024-09-10 08:38:21,350] [main] user.country = ${user.country} [testng] [2024-09-10 08:38:21,350] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-10 08:38:22,943] [main] ---------------------------------------- [testng] [2024-09-10 08:38:22,943] [main] Total files: 36 [testng] [2024-09-10 08:38:22,944] [main] Scan time: 1.593 s (44 ms/file) [testng] [2024-09-10 08:38:22,944] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-10 08:38:24,428] [pool-1-thread-1] Initializing /data/generated/mri-stack3.pcx: [testng] 08:38:24,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:38:24,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:38:24,432 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-10_08-38-24.log] [testng] 08:38:24,433 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77dca4cf - End of configuration. [testng] [2024-09-10 08:38:24,495] [pool-1-thread-12] Initializing /data/generated/mri-stack4.pcx: [testng] 08:38:24,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:38:24,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:38:24,501 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-10_08-38-24.log] [testng] 08:38:24,501 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b7da16c - End of configuration. [testng] [2024-09-10 08:38:24,533] [pool-1-thread-11] Initializing /data/generated/mri-stack20.pcx: [testng] 08:38:24,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:38:24,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:38:24,534 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-10_08-38-24.log] [testng] 08:38:24,535 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f332cc5 - End of configuration. [testng] [2024-09-10 08:38:24,542] [pool-1-thread-10] Initializing /data/generated/mri-stack8.pcx: [testng] 08:38:24,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:38:24,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:38:24,542 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-10_08-38-24.log] [testng] 08:38:24,543 |-INFO in ch.qos.logback.core.sift.SiftProcessor@760a5ccb - End of configuration. [testng] [2024-09-10 08:38:24,549] [pool-1-thread-9] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] 08:38:24,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:38:24,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:38:24,550 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-10_08-38-24.log] [testng] 08:38:24,550 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25ad83a7 - End of configuration. [testng] [2024-09-10 08:38:24,564] [pool-1-thread-8] Initializing /data/generated/mri-stack9.pcx: [testng] 08:38:24,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:38:24,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:38:24,565 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-10_08-38-24.log] [testng] 08:38:24,566 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12b94787 - End of configuration. [testng] [2024-09-10 08:38:24,575] [pool-1-thread-7] Initializing /data/generated/mri-stack18.pcx: [testng] 08:38:24,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:38:24,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:38:24,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-10_08-38-24.log] [testng] 08:38:24,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a37df18 - End of configuration. [testng] [2024-09-10 08:38:24,605] [pool-1-thread-6] Initializing /data/generated/mri-stack22.pcx: [testng] 08:38:24,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:38:24,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:38:24,606 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-10_08-38-24.log] [testng] 08:38:24,606 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5aaf6bdb - End of configuration. [testng] [2024-09-10 08:38:24,614] [pool-1-thread-5] Initializing /data/generated/mri-stack19.pcx: [testng] 08:38:24,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:38:24,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:38:24,614 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-10_08-38-24.log] [testng] 08:38:24,615 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7239624e - End of configuration. [testng] [2024-09-10 08:38:24,627] [pool-1-thread-4] Initializing /data/generated/mri-stack7.pcx: [testng] 08:38:24,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:38:24,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:38:24,628 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-10_08-38-24.log] [testng] 08:38:24,628 |-INFO in ch.qos.logback.core.sift.SiftProcessor@142833ef - End of configuration. [testng] [2024-09-10 08:38:24,637] [pool-1-thread-3] Initializing /data/generated/mri-stack13.pcx: [testng] 08:38:24,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:38:24,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:38:24,638 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-10_08-38-24.log] [testng] 08:38:24,639 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10ec7b60 - End of configuration. [testng] [2024-09-10 08:38:24,682] [pool-1-thread-2] Initializing /data/generated/mri-stack15.pcx: [testng] 08:38:24,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:38:24,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:38:24,683 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-10_08-38-24.log] [testng] 08:38:24,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2aec5e2d - End of configuration. [testng] [2024-09-10 08:38:27,578] [pool-1-thread-5] Initializing /data/generated/mri-stack23.pcx: [testng] [2024-09-10 08:38:27,582] [pool-1-thread-1] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2024-09-10 08:38:27,589] [pool-1-thread-8] Initializing /data/generated/mri-stack10.pcx: [testng] [2024-09-10 08:38:27,594] [pool-1-thread-6] Initializing /data/generated/mri-stack11.pcx: [testng] [2024-09-10 08:38:27,598] [pool-1-thread-11] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2024-09-10 08:38:27,604] [pool-1-thread-10] Initializing /data/generated/mri-stack24.pcx: [testng] [2024-09-10 08:38:27,611] [pool-1-thread-2] Initializing /data/generated/mri-stack12.pcx: [testng] [2024-09-10 08:38:27,616] [pool-1-thread-3] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] [2024-09-10 08:38:27,622] [pool-1-thread-4] Initializing /data/generated/mri-stack17.pcx: [testng] [2024-09-10 08:38:27,627] [pool-1-thread-12] Initializing /data/generated/mri-stack2.pcx: [testng] [2024-09-10 08:38:27,632] [pool-1-thread-9] Initializing /data/generated/mri-stack1.pcx: [testng] [2024-09-10 08:38:27,636] [pool-1-thread-7] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] [2024-09-10 08:38:27,894] [pool-1-thread-5] Initializing /data/generated/mri-stack16.pcx: [testng] [2024-09-10 08:38:27,923] [pool-1-thread-10] Initializing /data/generated/mri-stack14.pcx: [testng] [2024-09-10 08:38:27,928] [pool-1-thread-2] Initializing /data/generated/mri-stack5.pcx: [testng] [2024-09-10 08:38:27,986] [pool-1-thread-9] Initializing /data/generated/mri-stack21.pcx: [testng] [2024-09-10 08:38:28,023] [pool-1-thread-8] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] [2024-09-10 08:38:28,029] [pool-1-thread-4] Initializing /data/generated/mri-stack6.pcx: [testng] [2024-09-10 08:38:28,034] [pool-1-thread-6] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] [2024-09-10 08:38:28,041] [pool-1-thread-12] Initializing /data/generated/mri-stack26.pcx: [testng] [2024-09-10 08:38:28,179] [pool-1-thread-10] Initializing /data/generated/mri-stack25.pcx: [testng] [2024-09-10 08:38:28,220] [pool-1-thread-9] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [2024-09-10 08:38:28,226] [pool-1-thread-4] Initializing /data/generated/mri-stack0.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 18 seconds Finished: SUCCESS