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Started by upstream project "BIOFORMATS-test-repo" build number 182 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins10167764411034751813.sh + '[' pict = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_28731_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 08:47:14,965 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 08:47:14,967 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 08:47:14,967 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:47:14,968 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:47:14,969 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:47:14,969 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:47:14,969 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:47:14,969 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:47:14,970 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:47:14,970 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:47:14,971 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:47:14,971 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:47:15,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:47:15,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:47:15,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:47:15,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:47:15,164 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:47:15,165 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:47:15,165 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:47:15,165 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:47:15,165 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 08:47:15,166 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 08:47:15,166 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-10 08:47:15,175] [main] java.version = 11.0.16 [testng] 08:47:15,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:47:15,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:47:15,238 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-10_08-47-15.log] [testng] 08:47:15,240 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-09-10 08:47:15,243] [main] testng.directory = /data [testng] [2024-09-10 08:47:15,243] [main] testng.configDirectory = /config [testng] [2024-09-10 08:47:15,257] [main] testng.multiplier = 1.0 [testng] [2024-09-10 08:47:15,259] [main] testng.in-memory = false [testng] [2024-09-10 08:47:15,260] [main] testng.allow-missing = false [testng] [2024-09-10 08:47:15,260] [main] user.language = en [testng] [2024-09-10 08:47:15,260] [main] user.country = ${user.country} [testng] [2024-09-10 08:47:15,260] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-10 08:47:15,738] [main] ---------------------------------------- [testng] [2024-09-10 08:47:15,739] [main] Total files: 25 [testng] [2024-09-10 08:47:15,739] [main] Scan time: 0.478 s (19 ms/file) [testng] [2024-09-10 08:47:15,739] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-10 08:47:17,688] [pool-1-thread-1] Initializing /data/brian/images/WHT.PCT: [testng] 08:47:17,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:47:17,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:47:17,691 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-10_08-47-17.log] [testng] 08:47:17,692 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a878b2 - End of configuration. [testng] [2024-09-10 08:47:17,752] [pool-1-thread-12] Initializing /data/brian/images/GRN.PCT: [testng] 08:47:17,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:47:17,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:47:17,755 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-10_08-47-17.log] [testng] 08:47:17,755 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75b2951 - End of configuration. [testng] [2024-09-10 08:47:17,780] [pool-1-thread-11] Initializing /data/jqd/mire32.pict: [testng] 08:47:17,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:47:17,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:47:17,781 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-10_08-47-17.log] [testng] 08:47:17,782 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37c6d2f7 - End of configuration. [testng] [2024-09-10 08:47:17,804] [pool-1-thread-10] Initializing /data/brian/images/FLAG_RGB.pct: [testng] 08:47:17,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:47:17,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:47:17,805 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-10_08-47-17.log] [testng] 08:47:17,806 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70a550df - End of configuration. [testng] [2024-09-10 08:47:17,821] [pool-1-thread-9] Initializing /data/misc/swlogo.pict: [testng] 08:47:17,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:47:17,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:47:17,822 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-10_08-47-17.log] [testng] 08:47:17,823 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cee34e7 - End of configuration. [testng] [2024-09-10 08:47:17,842] [pool-1-thread-8] Initializing /data/misc/planet.png: [testng] 08:47:17,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:47:17,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:47:17,843 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-10_08-47-17.log] [testng] 08:47:17,843 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cc25ff0 - End of configuration. [testng] [2024-09-10 08:47:17,850] [pool-1-thread-7] Initializing /data/jqd/sixteenBit.pict: [testng] 08:47:17,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:47:17,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:47:17,851 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-10_08-47-17.log] [testng] 08:47:17,851 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a1dddc9 - End of configuration. [testng] [2024-09-10 08:47:17,868] [pool-1-thread-6] Initializing /data/misc/planet.pict: [testng] 08:47:17,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:47:17,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:47:17,869 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-10_08-47-17.log] [testng] 08:47:17,870 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4283052f - End of configuration. [testng] [2024-09-10 08:47:17,899] [pool-1-thread-5] Initializing /data/jqd/32bit.pict: [testng] 08:47:17,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:47:17,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:47:17,901 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-10_08-47-17.log] [testng] 08:47:17,901 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36a52bef - End of configuration. [testng] [2024-09-10 08:47:17,956] [pool-1-thread-4] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] 08:47:17,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:47:17,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:47:17,957 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-10_08-47-17.log] [testng] 08:47:17,958 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73e3f45 - End of configuration. [testng] [2024-09-10 08:47:17,976] [pool-1-thread-3] Initializing /data/brian/images/BLK.PCT: [testng] 08:47:17,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:47:17,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:47:17,977 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-10_08-47-17.log] [testng] 08:47:17,977 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58751953 - End of configuration. [testng] [2024-09-10 08:47:17,996] [pool-1-thread-2] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 08:47:17,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:47:17,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:47:17,996 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-10_08-47-17.log] [testng] 08:47:17,997 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72db2ad6 - End of configuration. [testng] [2024-09-10 08:47:19,415] [pool-1-thread-11] Initializing /data/wayne/PotatoMeristem.pict: [testng] [2024-09-10 08:47:19,454] [pool-1-thread-9] Initializing /data/brian/images/FLAG_B32.pct: [testng] [2024-09-10 08:47:19,487] [pool-1-thread-10] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-09-10 08:47:19,950] [pool-1-thread-8] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2024-09-10 08:47:19,970] [pool-1-thread-7] Initializing /data/jqd/mireSixteen.pict: [testng] [2024-09-10 08:47:19,996] [pool-1-thread-3] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] [2024-09-10 08:47:20,008] [pool-1-thread-1] Initializing /data/brian/images/BLU.PCT: [testng] [2024-09-10 08:47:20,030] [pool-1-thread-12] Initializing /data/brian/images/RED.PCT: [testng] [2024-09-10 08:47:20,047] [pool-1-thread-6] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] [2024-09-10 08:47:20,191] [pool-1-thread-5] Initializing /data/brian/images/MARBLES_B32.pct: [testng] [2024-09-10 08:47:20,427] [pool-1-thread-2] Initializing /data/misc/planet2.pict: [testng] [2024-09-10 08:47:20,561] [pool-1-thread-10] Initializing /data/brian/images/VENUS.pct: [testng] [2024-09-10 08:47:20,633] [pool-1-thread-9] Initializing /data/brian/images/YEL.PCT: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 seconds Finished: SUCCESS