Skip to content
[Jenkins]Jenkins
log in

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 182
originally caused by:
 Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins4507515602102485221.sh
+ '[' sis = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_28762_merge_ci -v /uod/idr/repos/curated/sis:/data -v /uod/idr-scratch/merge-ci/curated/sis:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 09:10:22,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 09:10:22,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 09:10:22,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 09:10:22,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 09:10:22,687 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 09:10:22,688 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 09:10:22,688 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 09:10:22,689 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 09:10:22,689 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@41a0aa7d - End of configuration.
   [testng] 09:10:22,690 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6574a52c - Registering current configuration as safe fallback point
   [testng] 09:10:22,690 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c1a5b54 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 648 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-09-10 09:10:22,703] [main] java.version = 11.0.16
   [testng] 09:10:22,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 09:10:22,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:10:23,044 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-10_09-10-22.log]
   [testng] 09:10:23,046 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-09-10 09:10:23,073] [main] testng.directory = /data
   [testng] [2024-09-10 09:10:23,074] [main] testng.configDirectory = /config
   [testng] [2024-09-10 09:10:23,358] [main] testng.multiplier = 1.0
   [testng] [2024-09-10 09:10:23,361] [main] testng.in-memory = false
   [testng] [2024-09-10 09:10:23,361] [main] testng.allow-missing = false
   [testng] [2024-09-10 09:10:23,361] [main] user.language = en
   [testng] [2024-09-10 09:10:23,361] [main] user.country = ${user.country}
   [testng] [2024-09-10 09:10:23,361] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-09-10 09:10:25,658] [main] ----------------------------------------
   [testng] [2024-09-10 09:10:25,659] [main] Total files: 13
   [testng] [2024-09-10 09:10:25,659] [main] Scan time: 2.297 s (176 ms/file)
   [testng] [2024-09-10 09:10:25,659] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 11 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-09-10 09:10:29,293] [pool-1-thread-1] Initializing /data/glen/CG 3.31 20K.tif: 
   [testng] 09:10:29,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 09:10:29,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:10:29,297 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-10_09-10-29.log]
   [testng] 09:10:29,297 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39eadbd1 - End of configuration.
   [testng] [2024-09-10 09:10:29,514] [pool-1-thread-11] Initializing /data/russell/Arbacia 2week ADL.tif: 
   [testng] 09:10:29,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 09:10:29,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:10:29,518 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-10_09-10-29.log]
   [testng] 09:10:29,519 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d7c47b3 - End of configuration.
   [testng] [2024-09-10 09:10:29,728] [pool-1-thread-10] Initializing /data/dimitri/ELN-ARM_00049_38.tif: 
   [testng] 09:10:29,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 09:10:29,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:10:29,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-10_09-10-29.log]
   [testng] 09:10:29,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39ccd99b - End of configuration.
   [testng] [2024-09-10 09:10:29,876] [pool-1-thread-9] Initializing /data/glen/CG 3.31 15K.tif: 
   [testng] 09:10:29,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 09:10:29,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:10:29,877 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-10_09-10-29.log]
   [testng] 09:10:29,878 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b21aae6 - End of configuration.
   [testng] [2024-09-10 09:10:30,033] [pool-1-thread-8] Initializing /data/glen/L1500k P_3_7500X.tif: 
   [testng] 09:10:30,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 09:10:30,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:10:30,035 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-10_09-10-30.log]
   [testng] 09:10:30,035 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e8d6e12 - End of configuration.
   [testng] [2024-09-10 09:10:30,193] [pool-1-thread-7] Initializing /data/glen/L1468a-2_4_15000X.tif: 
   [testng] 09:10:30,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 09:10:30,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:10:30,195 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-10_09-10-30.log]
   [testng] 09:10:30,195 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7683724c - End of configuration.
   [testng] [2024-09-10 09:10:30,321] [pool-1-thread-6] Initializing /data/pki/Tv2.tif: 
   [testng] 09:10:30,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 09:10:30,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:10:30,322 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-10_09-10-30.log]
   [testng] 09:10:30,323 |-INFO in ch.qos.logback.core.sift.SiftProcessor@382d34b5 - End of configuration.
   [testng] [2024-09-10 09:10:30,539] [pool-1-thread-5] Initializing /data/glen/L1500k P_4_7500X.tif: 
   [testng] 09:10:30,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 09:10:30,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:10:30,540 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-10_09-10-30.log]
   [testng] 09:10:30,541 |-INFO in ch.qos.logback.core.sift.SiftProcessor@233e9178 - End of configuration.
   [testng] [2024-09-10 09:10:30,646] [pool-1-thread-4] Initializing /data/glen/CG 3.31 10K.tif: 
   [testng] 09:10:30,646 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 09:10:30,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:10:30,647 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-10_09-10-30.log]
   [testng] 09:10:30,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e8f6e93 - End of configuration.
   [testng] [2024-09-10 09:10:30,770] [pool-1-thread-3] Initializing /data/strand/MIA.tif: 
   [testng] 09:10:30,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 09:10:30,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:10:30,771 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-10_09-10-30.log]
   [testng] 09:10:30,772 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30242494 - End of configuration.
   [testng] [2024-09-10 09:10:30,958] [pool-1-thread-2] Initializing /data/strand/FS44-1-254.tif: 
   [testng] 09:10:30,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 09:10:30,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:10:30,959 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-10_09-10-30.log]
   [testng] 09:10:30,960 |-INFO in ch.qos.logback.core.sift.SiftProcessor@317cafa8 - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 583, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 30 seconds
Finished: SUCCESS