![[Jenkins]](/jenkins/static/9ed1fe1f/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 182 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins773806219676102238.sh + '[' psd = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_28813_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 09:39:50,561 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 09:39:50,563 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 09:39:50,563 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:39:50,564 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:39:50,565 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 09:39:50,565 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 09:39:50,565 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 09:39:50,565 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:39:50,566 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:39:50,566 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 09:39:50,567 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 09:39:50,567 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 09:39:50,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 09:39:50,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 09:39:50,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 09:39:50,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 09:39:50,764 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 09:39:50,764 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 09:39:50,764 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 09:39:50,765 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 09:39:50,765 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 09:39:50,766 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 09:39:50,766 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 200 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-10 09:39:50,775] [main] java.version = 11.0.16 [testng] 09:39:50,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:39:50,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:39:50,821 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-10_09-39-50.log] [testng] 09:39:50,823 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-09-10 09:39:50,826] [main] testng.directory = /data [testng] [2024-09-10 09:39:50,826] [main] testng.configDirectory = /config [testng] [2024-09-10 09:39:50,836] [main] testng.multiplier = 1.0 [testng] [2024-09-10 09:39:50,837] [main] testng.in-memory = false [testng] [2024-09-10 09:39:50,837] [main] testng.allow-missing = false [testng] [2024-09-10 09:39:50,838] [main] user.language = en [testng] [2024-09-10 09:39:50,838] [main] user.country = ${user.country} [testng] [2024-09-10 09:39:50,838] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-10 09:39:51,496] [main] ---------------------------------------- [testng] [2024-09-10 09:39:51,496] [main] Total files: 18 [testng] [2024-09-10 09:39:51,496] [main] Scan time: 0.658 s (36 ms/file) [testng] [2024-09-10 09:39:51,496] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-10 09:39:52,868] [pool-1-thread-1] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] 09:39:52,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:39:52,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:39:52,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-10_09-39-52.log] [testng] 09:39:52,873 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fad9d33 - End of configuration. [testng] [2024-09-10 09:39:52,902] [pool-1-thread-12] Initializing /data/misc/venus_composite.psd: [testng] 09:39:52,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:39:52,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:39:52,904 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-10_09-39-52.log] [testng] 09:39:52,904 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6507fe0 - End of configuration. [testng] [2024-09-10 09:39:52,929] [pool-1-thread-11] Initializing /data/big-images/8kx8k.psd: [testng] 09:39:52,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:39:52,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:39:52,930 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-10_09-39-52.log] [testng] 09:39:52,931 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ca99ea4 - End of configuration. [testng] [2024-09-10 09:39:53,001] [pool-1-thread-10] Initializing /data/cris/house.tif: [testng] 09:39:53,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:39:53,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:39:53,003 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-10_09-39-53.log] [testng] 09:39:53,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6742228a - End of configuration. [testng] [2024-09-10 09:39:53,046] [pool-1-thread-9] Initializing /data/ascb/607x.psd: [testng] 09:39:53,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:39:53,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:39:53,047 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-10_09-39-53.log] [testng] 09:39:53,048 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fad2c80 - End of configuration. [testng] [2024-09-10 09:39:53,116] [pool-1-thread-8] Initializing /data/misc/vig_drawing_1.psd: [testng] 09:39:53,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:39:53,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:39:53,117 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-10_09-39-53.log] [testng] 09:39:53,118 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a5df8e1 - End of configuration. [testng] [2024-09-10 09:39:53,153] [pool-1-thread-7] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 09:39:53,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:39:53,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:39:53,154 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-10_09-39-53.log] [testng] 09:39:53,155 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8c27b7a - End of configuration. [testng] [2024-09-10 09:39:53,226] [pool-1-thread-6] Initializing /data/misc/venus_composite_8bit.psd: [testng] 09:39:53,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:39:53,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:39:53,229 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-10_09-39-53.log] [testng] 09:39:53,229 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ecc0a31 - End of configuration. [testng] [2024-09-10 09:39:53,332] [pool-1-thread-5] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 09:39:53,333 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:39:53,333 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:39:53,334 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-10_09-39-53.log] [testng] 09:39:53,334 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d9aa1ab - End of configuration. [testng] [2024-09-10 09:39:53,374] [pool-1-thread-4] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] 09:39:53,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:39:53,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:39:53,376 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-10_09-39-53.log] [testng] 09:39:53,377 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c618f3c - End of configuration. [testng] [2024-09-10 09:39:53,422] [pool-1-thread-3] Initializing /data/misc/glossy_orbs.psd: [testng] 09:39:53,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:39:53,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:39:53,424 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-10_09-39-53.log] [testng] 09:39:53,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2aeb0854 - End of configuration. [testng] [2024-09-10 09:39:53,443] [pool-1-thread-2] Initializing /data/misc/smilie.psd: [testng] 09:39:53,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:39:53,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:39:53,445 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-10_09-39-53.log] [testng] 09:39:53,445 |-INFO in ch.qos.logback.core.sift.SiftProcessor@194c43ae - End of configuration. [testng] [2024-09-10 09:39:55,425] [pool-1-thread-3] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] [2024-09-10 09:39:55,444] [pool-1-thread-10] Initializing /data/simon/colour_separated_image.psd: [testng] [2024-09-10 09:39:55,641] [pool-1-thread-2] Initializing /data/ascb/423.psd: [testng] [2024-09-10 09:39:55,813] [pool-1-thread-8] Initializing /data/misc/glossy_buttons.psd: [testng] [2024-09-10 09:39:55,974] [pool-1-thread-12] Initializing /data/qa-4117/caspase gel-1.psd: [testng] [2024-09-10 09:39:56,145] [pool-1-thread-10] Initializing /data/ascb/thin&thick fill.2.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 28 seconds Finished: SUCCESS