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Started by upstream project "BIOFORMATS-test-repo" build number 23 originally caused by: Started by upstream project "Trigger" build number 26 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins9299641566322696421.sh + '[' ivision = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_2915_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:41:29,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:41:29,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:41:29,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:41:29,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:41:29,299 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:41:29,299 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:41:29,300 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:41:29,300 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:41:29,300 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 02:41:29,301 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 02:41:29,301 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 420 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-05 02:41:29,312] [main] java.version = 1.8.0_342 [testng] 02:41:29,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:41:29,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:29,507 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-05_02-41-29.log] [testng] 02:41:29,509 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-05 02:41:29,511] [main] testng.directory = /data [testng] [2024-04-05 02:41:29,511] [main] testng.configDirectory = /config [testng] [2024-04-05 02:41:29,523] [main] testng.multiplier = 1.0 [testng] [2024-04-05 02:41:29,523] [main] testng.in-memory = false [testng] [2024-04-05 02:41:29,523] [main] testng.allow-missing = false [testng] [2024-04-05 02:41:29,523] [main] user.language = en [testng] [2024-04-05 02:41:29,523] [main] user.country = ${user.country} [testng] [2024-04-05 02:41:29,523] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-05 02:41:30,547] [main] ---------------------------------------- [testng] [2024-04-05 02:41:30,547] [main] Total files: 17 [testng] [2024-04-05 02:41:30,547] [main] Scan time: 1.024 s (60 ms/file) [testng] [2024-04-05 02:41:30,547] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 17 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-05 02:41:31,588] [pool-1-thread-1] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm: [testng] 02:41:31,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:41:31,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:31,590 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-05_02-41-31.log] [testng] 02:41:31,590 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e22aef0 - End of configuration. [testng] [2024-04-05 02:41:31,615] [pool-1-thread-12] Initializing /data/jcb/200810162/mutBA plus bio.ipm: [testng] 02:41:31,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:41:31,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:31,616 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-05_02-41-31.log] [testng] 02:41:31,616 |-INFO in ch.qos.logback.core.sift.SiftProcessor@161bf3f0 - End of configuration. [testng] [2024-04-05 02:41:31,636] [pool-1-thread-11] Initializing /data/jcb/200810162/mut BA no bio.ipm: [testng] 02:41:31,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:41:31,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:31,637 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-05_02-41-31.log] [testng] 02:41:31,638 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b91be61 - End of configuration. [testng] [2024-04-05 02:41:31,664] [pool-1-thread-10] Initializing /data/jcb/200810162/wt BA plus bio.ipm: [testng] 02:41:31,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:41:31,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:31,664 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-05_02-41-31.log] [testng] 02:41:31,665 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a9f32a4 - End of configuration. [testng] [2024-04-05 02:41:31,683] [pool-1-thread-9] Initializing /data/christopher/Color48 Copy.ipm: [testng] 02:41:31,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:41:31,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:31,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-05_02-41-31.log] [testng] 02:41:31,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31a1efc6 - End of configuration. [testng] [2024-04-05 02:41:31,700] [pool-1-thread-8] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm: [testng] 02:41:31,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:41:31,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:31,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-05_02-41-31.log] [testng] 02:41:31,701 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cc63795 - End of configuration. [testng] [2024-04-05 02:41:31,737] [pool-1-thread-7] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm: [testng] 02:41:31,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:41:31,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:31,738 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-05_02-41-31.log] [testng] 02:41:31,738 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e8fdded - End of configuration. [testng] [2024-04-05 02:41:31,754] [pool-1-thread-6] Initializing /data/samples/24bit 300x200x3.ipm: [testng] 02:41:31,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:41:31,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:31,755 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-05_02-41-31.log] [testng] 02:41:31,756 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bdbb442 - End of configuration. [testng] [2024-04-05 02:41:31,796] [pool-1-thread-5] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm: [testng] 02:41:31,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:41:31,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:31,796 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-05_02-41-31.log] [testng] 02:41:31,797 |-INFO in ch.qos.logback.core.sift.SiftProcessor@772b8566 - End of configuration. [testng] [2024-04-05 02:41:31,838] [pool-1-thread-4] Initializing /data/samples/08Bit 320x256x1.ipm: [testng] 02:41:31,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:41:31,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:31,839 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-05_02-41-31.log] [testng] 02:41:31,839 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8d67d02 - End of configuration. [testng] [2024-04-05 02:41:31,845] [pool-1-thread-3] Initializing /data/nigel/CD48_75_24hrColor.ipm: [testng] 02:41:31,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:41:31,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:31,846 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-05_02-41-31.log] [testng] 02:41:31,847 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1794a274 - End of configuration. [testng] [2024-04-05 02:41:31,855] [pool-1-thread-2] Initializing /data/samples/16-bit 320x256x3.ipm: [testng] 02:41:31,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:41:31,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:31,857 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-05_02-41-31.log] [testng] 02:41:31,857 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36bf33f3 - End of configuration. [testng] [2024-04-05 02:41:33,498] [pool-1-thread-6] Initializing /data/samples/08Bit 320x256xthree.ipm: [testng] [2024-04-05 02:41:33,506] [pool-1-thread-12] Initializing /data/samples/48bit 150x100x3.ipm: [testng] [2024-04-05 02:41:33,512] [pool-1-thread-7] Initializing /data/samples/16bit 320x256x1.ipm: [testng] [2024-04-05 02:41:33,518] [pool-1-thread-11] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center: [testng] [2024-04-05 02:41:33,530] [pool-1-thread-10] Initializing /data/jcb/200810162/wt ba no bio.ipm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 901, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 seconds Finished: SUCCESS