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Started by upstream project "BIOFORMATS-test-repo" build number 24 originally caused by: Started by upstream project "Trigger" build number 27 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins1162496767528637669.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_2925_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 10:54:15,831 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 10:54:15,832 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 10:54:15,832 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 10:54:15,833 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 10:54:15,834 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 10:54:15,834 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 10:54:15,834 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 10:54:15,834 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 10:54:15,834 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 10:54:15,835 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 10:54:15,835 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 10:54:15,835 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 10:54:16,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 10:54:16,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 10:54:16,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 10:54:16,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 10:54:16,080 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 10:54:16,080 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 10:54:16,080 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 10:54:16,081 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 10:54:16,081 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 10:54:16,081 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 10:54:16,082 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 247 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-05 10:54:16,091] [main] java.version = 1.8.0_342 [testng] 10:54:16,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 10:54:16,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:54:16,136 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-05_10-54-16.log] [testng] 10:54:16,137 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-05 10:54:16,139] [main] testng.directory = /data [testng] [2024-04-05 10:54:16,139] [main] testng.configDirectory = /config [testng] [2024-04-05 10:54:16,150] [main] testng.multiplier = 1.0 [testng] [2024-04-05 10:54:16,151] [main] testng.in-memory = false [testng] [2024-04-05 10:54:16,151] [main] testng.allow-missing = false [testng] [2024-04-05 10:54:16,151] [main] user.language = en [testng] [2024-04-05 10:54:16,151] [main] user.country = ${user.country} [testng] [2024-04-05 10:54:16,151] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-05 10:54:16,685] [main] ---------------------------------------- [testng] [2024-04-05 10:54:16,685] [main] Total files: 36 [testng] [2024-04-05 10:54:16,685] [main] Scan time: 0.534 s (14 ms/file) [testng] [2024-04-05 10:54:16,685] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-05 10:54:19,455] [pool-1-thread-1] Initializing /data/generated/mri-stack13.pcx: [testng] 10:54:19,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 10:54:19,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:54:19,456 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-05_10-54-19.log] [testng] 10:54:19,456 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12a9e64a - End of configuration. [testng] [2024-04-05 10:54:19,494] [pool-1-thread-12] Initializing /data/generated/mri-stack23.pcx: [testng] 10:54:19,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 10:54:19,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:54:19,495 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-05_10-54-19.log] [testng] 10:54:19,496 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d3ce98b - End of configuration. [testng] [2024-04-05 10:54:19,500] [pool-1-thread-11] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] 10:54:19,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 10:54:19,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:54:19,501 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-05_10-54-19.log] [testng] 10:54:19,501 |-INFO in ch.qos.logback.core.sift.SiftProcessor@507eb1c0 - End of configuration. [testng] [2024-04-05 10:54:19,508] [pool-1-thread-10] Initializing /data/generated/mri-stack17.pcx: [testng] 10:54:19,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 10:54:19,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:54:19,509 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-05_10-54-19.log] [testng] 10:54:19,509 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c48bf65 - End of configuration. [testng] [2024-04-05 10:54:19,513] [pool-1-thread-9] Initializing /data/generated/mri-stack5.pcx: [testng] 10:54:19,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 10:54:19,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:54:19,514 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-05_10-54-19.log] [testng] 10:54:19,514 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a034df9 - End of configuration. [testng] [2024-04-05 10:54:19,518] [pool-1-thread-8] Initializing /data/generated/mri-stack7.pcx: [testng] 10:54:19,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 10:54:19,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:54:19,519 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-05_10-54-19.log] [testng] 10:54:19,519 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6248d0b5 - End of configuration. [testng] [2024-04-05 10:54:19,523] [pool-1-thread-7] Initializing /data/generated/mri-stack11.pcx: [testng] 10:54:19,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 10:54:19,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:54:19,523 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-05_10-54-19.log] [testng] 10:54:19,524 |-INFO in ch.qos.logback.core.sift.SiftProcessor@264aa803 - End of configuration. [testng] [2024-04-05 10:54:19,527] [pool-1-thread-6] Initializing /data/generated/mri-stack4.pcx: [testng] 10:54:19,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 10:54:19,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:54:19,528 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-05_10-54-19.log] [testng] 10:54:19,528 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11e77647 - End of configuration. [testng] [2024-04-05 10:54:19,531] [pool-1-thread-5] Initializing /data/generated/mri-stack15.pcx: [testng] 10:54:19,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 10:54:19,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:54:19,532 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-05_10-54-19.log] [testng] 10:54:19,532 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52c2d503 - End of configuration. [testng] [2024-04-05 10:54:19,536] [pool-1-thread-4] Initializing /data/generated/mri-stack2.pcx: [testng] 10:54:19,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 10:54:19,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:54:19,537 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-05_10-54-19.log] [testng] 10:54:19,537 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cbcc1e0 - End of configuration. [testng] [2024-04-05 10:54:19,541] [pool-1-thread-3] Initializing /data/generated/mri-stack18.pcx: [testng] 10:54:19,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 10:54:19,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:54:19,542 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-05_10-54-19.log] [testng] 10:54:19,542 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11cf9802 - End of configuration. [testng] [2024-04-05 10:54:19,546] [pool-1-thread-2] Initializing /data/generated/mri-stack8.pcx: [testng] 10:54:19,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 10:54:19,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:54:19,547 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-05_10-54-19.log] [testng] 10:54:19,547 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52a32431 - End of configuration. [testng] [2024-04-05 10:54:21,157] [pool-1-thread-7] Initializing /data/generated/mri-stack3.pcx: [testng] [2024-04-05 10:54:21,161] [pool-1-thread-6] Initializing /data/generated/mri-stack22.pcx: [testng] [2024-04-05 10:54:21,165] [pool-1-thread-8] Initializing /data/generated/mri-stack20.pcx: [testng] [2024-04-05 10:54:21,168] [pool-1-thread-9] Initializing /data/generated/mri-stack19.pcx: [testng] [2024-04-05 10:54:21,171] [pool-1-thread-2] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2024-04-05 10:54:21,176] [pool-1-thread-12] Initializing /data/generated/mri-stack16.pcx: [testng] [2024-04-05 10:54:21,180] [pool-1-thread-1] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] [2024-04-05 10:54:21,185] [pool-1-thread-10] Initializing /data/generated/mri-stack1.pcx: [testng] [2024-04-05 10:54:21,190] [pool-1-thread-5] Initializing /data/generated/mri-stack24.pcx: [testng] [2024-04-05 10:54:21,193] [pool-1-thread-4] Initializing /data/generated/mri-stack21.pcx: [testng] [2024-04-05 10:54:21,195] [pool-1-thread-3] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2024-04-05 10:54:21,200] [pool-1-thread-11] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2024-04-05 10:54:21,456] [pool-1-thread-6] Initializing /data/generated/mri-stack25.pcx: [testng] [2024-04-05 10:54:21,458] [pool-1-thread-4] Initializing /data/generated/mri-stack26.pcx: [testng] [2024-04-05 10:54:21,461] [pool-1-thread-9] Initializing /data/generated/mri-stack9.pcx: [testng] [2024-04-05 10:54:21,482] [pool-1-thread-8] Initializing /data/generated/mri-stack6.pcx: [testng] [2024-04-05 10:54:21,485] [pool-1-thread-5] Initializing /data/generated/mri-stack14.pcx: [testng] [2024-04-05 10:54:21,488] [pool-1-thread-12] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] [2024-04-05 10:54:21,506] [pool-1-thread-7] Initializing /data/generated/mri-stack12.pcx: [testng] [2024-04-05 10:54:21,509] [pool-1-thread-10] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] [2024-04-05 10:54:21,573] [pool-1-thread-4] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [2024-04-05 10:54:21,578] [pool-1-thread-6] Initializing /data/generated/mri-stack10.pcx: [testng] [2024-04-05 10:54:21,594] [pool-1-thread-9] Initializing /data/generated/mri-stack0.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 10 seconds Finished: SUCCESS