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Started by upstream project "BIOFORMATS-test-repo" build number 185 originally caused by: Started by upstream project "Trigger" build number 207 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins1681165850811890911.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_29261_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 16:11:27,971 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 16:11:27,973 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 16:11:27,973 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 16:11:27,975 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 16:11:27,976 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 16:11:27,976 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 16:11:27,976 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 16:11:27,977 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 16:11:27,977 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 16:11:27,978 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 16:11:27,979 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 16:11:27,979 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 16:11:28,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 16:11:28,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 16:11:28,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 16:11:28,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 16:11:28,328 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 16:11:28,329 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 16:11:28,329 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 16:11:28,329 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 16:11:28,329 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 16:11:28,331 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 16:11:28,331 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 354 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-11 16:11:28,347] [main] java.version = 17.0.2 [testng] 16:11:28,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 16:11:28,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:11:28,457 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-11_16-11-28.log] [testng] 16:11:28,462 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-09-11 16:11:28,467] [main] testng.directory = /data [testng] [2024-09-11 16:11:28,468] [main] testng.configDirectory = /config [testng] [2024-09-11 16:11:28,526] [main] testng.multiplier = 1.0 [testng] [2024-09-11 16:11:28,528] [main] testng.in-memory = false [testng] [2024-09-11 16:11:28,528] [main] testng.allow-missing = false [testng] [2024-09-11 16:11:28,528] [main] user.language = en [testng] [2024-09-11 16:11:28,528] [main] user.country = ${user.country} [testng] [2024-09-11 16:11:28,528] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-11 16:11:43,799] [main] ---------------------------------------- [testng] [2024-09-11 16:11:43,799] [main] Total files: 268 [testng] [2024-09-11 16:11:43,800] [main] Scan time: 15.27 s (56 ms/file) [testng] [2024-09-11 16:11:43,800] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-11 16:11:55,930] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] 16:11:55,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 16:11:55,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:11:55,932 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-11_16-11-55.log] [testng] 16:11:55,932 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b39439d - End of configuration. [testng] [2024-09-11 16:11:55,960] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] 16:11:55,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 16:11:55,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:11:55,962 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-11_16-11-55.log] [testng] 16:11:55,962 |-INFO in ch.qos.logback.core.sift.SiftProcessor@552eaeb - End of configuration. [testng] [2024-09-11 16:11:55,983] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] 16:11:55,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 16:11:55,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:11:55,984 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-11_16-11-55.log] [testng] 16:11:55,985 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b673677 - End of configuration. [testng] [2024-09-11 16:11:56,013] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] 16:11:56,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 16:11:56,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:11:56,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-11_16-11-56.log] [testng] 16:11:56,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bdd8e78 - End of configuration. [testng] [2024-09-11 16:11:56,036] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] 16:11:56,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 16:11:56,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:11:56,037 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-11_16-11-56.log] [testng] 16:11:56,037 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18b280f - End of configuration. [testng] [2024-09-11 16:11:56,057] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] 16:11:56,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 16:11:56,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:11:56,058 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-11_16-11-56.log] [testng] 16:11:56,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7efd1788 - End of configuration. [testng] [2024-09-11 16:11:56,074] [pool-1-thread-7] Initializing /data/steve/TIFF/Little owl TIFF: [testng] 16:11:56,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 16:11:56,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:11:56,075 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-11_16-11-56.log] [testng] 16:11:56,075 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61a01686 - End of configuration. [testng] [2024-09-11 16:11:56,118] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] 16:11:56,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 16:11:56,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:11:56,119 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-11_16-11-56.log] [testng] 16:11:56,119 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71797482 - End of configuration. [testng] [2024-09-11 16:11:56,137] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] 16:11:56,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 16:11:56,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:11:56,138 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-11_16-11-56.log] [testng] 16:11:56,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5619e4c0 - End of configuration. [testng] [2024-09-11 16:11:56,159] [pool-1-thread-4] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] 16:11:56,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 16:11:56,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:11:56,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-11_16-11-56.log] [testng] 16:11:56,161 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e83067f - End of configuration. [testng] [2024-09-11 16:11:56,169] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] 16:11:56,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 16:11:56,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:11:56,170 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-11_16-11-56.log] [testng] 16:11:56,170 |-INFO in ch.qos.logback.core.sift.SiftProcessor@342b13d8 - End of configuration. [testng] [2024-09-11 16:11:56,208] [pool-1-thread-2] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] 16:11:56,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 16:11:56,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:11:56,210 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-11_16-11-56.log] [testng] 16:11:56,210 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27101a91 - End of configuration. [testng] [2024-09-11 16:11:57,540] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-09-11 16:11:57,563] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-09-11 16:11:57,580] [pool-1-thread-5] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-09-11 16:11:57,633] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-09-11 16:11:57,800] [pool-1-thread-9] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-09-11 16:11:57,835] [pool-1-thread-11] Initializing /data/steve/FITS/M13.fits: [testng] [2024-09-11 16:11:57,934] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-09-11 16:11:57,957] [pool-1-thread-2] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-09-11 16:11:58,074] [pool-1-thread-3] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-09-11 16:11:58,098] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-09-11 16:11:58,128] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-09-11 16:11:58,141] [pool-1-thread-1] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-09-11 16:11:58,346] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-09-11 16:11:58,594] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-09-11 16:11:58,622] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-09-11 16:11:58,675] [pool-1-thread-7] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-09-11 16:11:58,701] [pool-1-thread-4] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-09-11 16:11:58,765] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-09-11 16:11:58,789] [pool-1-thread-5] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-09-11 16:11:58,861] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-09-11 16:11:58,895] [pool-1-thread-2] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-09-11 16:11:58,929] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-09-11 16:11:58,983] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-09-11 16:11:59,017] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-09-11 16:11:59,105] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-09-11 16:11:59,232] [pool-1-thread-12] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-09-11 16:11:59,420] [pool-1-thread-9] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-09-11 16:11:59,544] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-09-11 16:11:59,639] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-09-11 16:11:59,659] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-09-11 16:11:59,698] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-09-11 16:11:59,738] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-09-11 16:11:59,755] [pool-1-thread-4] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-09-11 16:11:59,880] [pool-1-thread-10] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-09-11 16:11:59,971] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-09-11 16:12:00,027] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-09-11 16:12:00,111] [pool-1-thread-5] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-09-11 16:12:00,200] [pool-1-thread-1] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-09-11 16:12:00,237] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-09-11 16:12:00,279] [pool-1-thread-6] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-09-11 16:12:00,334] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-09-11 16:12:00,394] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-09-11 16:12:00,426] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-09-11 16:12:00,616] [pool-1-thread-3] Initializing /data/steve/FITS/M51.fits: [testng] [2024-09-11 16:12:00,646] [pool-1-thread-9] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-09-11 16:12:00,766] [pool-1-thread-10] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-09-11 16:12:00,843] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-09-11 16:12:00,894] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-09-11 16:12:00,941] [pool-1-thread-4] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-09-11 16:12:00,963] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-09-11 16:12:01,032] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-09-11 16:12:01,122] [pool-1-thread-9] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-09-11 16:12:01,203] [pool-1-thread-7] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-09-11 16:12:01,220] [pool-1-thread-12] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-09-11 16:12:01,374] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-09-11 16:12:01,424] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-09-11 16:12:01,497] [pool-1-thread-8] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-09-11 16:12:01,548] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-09-11 16:12:01,732] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-09-11 16:12:01,762] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2024-09-11 16:12:01,784] [pool-1-thread-10] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-09-11 16:12:01,817] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-09-11 16:12:01,878] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-09-11 16:12:02,147] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-09-11 16:12:02,193] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-09-11 16:12:02,339] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-09-11 16:12:02,406] [pool-1-thread-4] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-09-11 16:12:02,494] [pool-1-thread-10] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-09-11 16:12:02,629] [pool-1-thread-3] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-09-11 16:12:02,678] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-09-11 16:12:02,831] [pool-1-thread-4] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-09-11 16:12:02,901] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-09-11 16:12:03,007] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-09-11 16:12:03,211] [pool-1-thread-6] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-09-11 16:12:03,266] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-09-11 16:12:03,416] [pool-1-thread-7] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-09-11 16:12:03,459] [pool-1-thread-3] Initializing /data/steve/FITS/M104.fits: [testng] [2024-09-11 16:12:03,467] [pool-1-thread-12] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-09-11 16:12:03,495] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-09-11 16:12:03,657] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-09-11 16:12:03,789] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-09-11 16:12:03,812] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] [2024-09-11 16:12:03,835] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-09-11 16:12:03,862] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-09-11 16:12:03,939] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-09-11 16:12:04,035] [pool-1-thread-5] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-09-11 16:12:04,066] [pool-1-thread-1] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-09-11 16:12:04,139] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-09-11 16:12:04,352] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-09-11 16:12:04,363] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-09-11 16:12:04,383] [pool-1-thread-7] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2024-09-11 16:12:04,442] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-09-11 16:12:04,510] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-09-11 16:12:04,584] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-09-11 16:12:04,637] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-09-11 16:12:04,649] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-09-11 16:12:04,793] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-09-11 16:12:04,819] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-09-11 16:12:04,830] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-09-11 16:12:04,862] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-09-11 16:12:04,913] [pool-1-thread-11] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-09-11 16:12:05,010] [pool-1-thread-3] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-09-11 16:12:05,034] [pool-1-thread-10] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-09-11 16:12:05,111] [pool-1-thread-12] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-09-11 16:12:05,262] [pool-1-thread-1] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-09-11 16:12:05,377] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-09-11 16:12:05,415] [pool-1-thread-9] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-09-11 16:12:05,444] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-09-11 16:12:05,709] [pool-1-thread-5] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-09-11 16:12:05,751] [pool-1-thread-6] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-09-11 16:12:05,794] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] [2024-09-11 16:12:05,827] [pool-1-thread-8] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-09-11 16:12:06,016] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-09-11 16:12:06,061] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-09-11 16:12:06,345] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-09-11 16:12:06,399] [pool-1-thread-10] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-09-11 16:12:06,441] [pool-1-thread-9] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-09-11 16:12:06,470] [pool-1-thread-5] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-09-11 16:12:06,508] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-09-11 16:12:06,529] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-09-11 16:12:06,627] [pool-1-thread-8] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-09-11 16:12:06,811] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-09-11 16:12:06,924] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-09-11 16:12:06,981] [pool-1-thread-11] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-09-11 16:12:07,006] [pool-1-thread-1] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2024-09-11 16:12:07,101] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-09-11 16:12:07,271] [pool-1-thread-4] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2024-09-11 16:12:07,437] [pool-1-thread-10] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-09-11 16:12:07,488] [pool-1-thread-5] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-09-11 16:12:07,527] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-09-11 16:12:07,544] [pool-1-thread-9] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-09-11 16:12:07,599] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-09-11 16:12:07,618] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-09-11 16:12:07,938] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-09-11 16:12:07,995] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-09-11 16:12:08,194] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-09-11 16:12:08,407] [pool-1-thread-5] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-09-11 16:12:08,486] [pool-1-thread-12] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-09-11 16:12:08,504] [pool-1-thread-4] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-09-11 16:12:08,536] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-09-11 16:12:08,596] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-09-11 16:12:08,623] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-09-11 16:12:08,670] [pool-1-thread-3] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-09-11 16:12:08,740] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-09-11 16:12:08,826] [pool-1-thread-9] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-09-11 16:12:08,944] [pool-1-thread-12] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-09-11 16:12:09,002] [pool-1-thread-10] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-09-11 16:12:09,154] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 50 seconds Finished: SUCCESS