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Started by upstream project "BIOFORMATS-test-repo" build number 186 originally caused by: Started by upstream project "Trigger" build number 208 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins2713451255964810743.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_29352_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:22:32,294 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:22:32,295 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 01:22:32,295 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:32,296 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:32,296 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:22:32,297 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:22:32,297 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:22:32,297 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:32,297 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:32,298 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:22:32,298 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:22:32,298 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:22:32,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:22:32,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:22:32,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:22:32,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:22:32,488 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:22:32,488 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:22:32,488 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:22:32,488 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:22:32,488 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 01:22:32,489 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 01:22:32,489 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 192 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-12 01:22:32,498] [main] java.version = 21 [testng] 01:22:32,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:22:32,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:32,543 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-12_01-22-32.log] [testng] 01:22:32,544 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-09-12 01:22:32,546] [main] testng.directory = /data [testng] [2024-09-12 01:22:32,546] [main] testng.configDirectory = /config [testng] [2024-09-12 01:22:32,555] [main] testng.multiplier = 1.0 [testng] [2024-09-12 01:22:32,555] [main] testng.in-memory = false [testng] [2024-09-12 01:22:32,555] [main] testng.allow-missing = false [testng] [2024-09-12 01:22:32,555] [main] user.language = en [testng] [2024-09-12 01:22:32,555] [main] user.country = ${user.country} [testng] [2024-09-12 01:22:32,555] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-12 01:22:34,459] [main] ---------------------------------------- [testng] [2024-09-12 01:22:34,459] [main] Total files: 21 [testng] [2024-09-12 01:22:34,459] [main] Scan time: 1.904 s (90 ms/file) [testng] [2024-09-12 01:22:34,460] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-12 01:22:37,968] [pool-1-thread-1] Initializing /data/stefan/001_q07.txt: [testng] 01:22:37,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:22:37,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:37,969 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-12_01-22-37.log] [testng] 01:22:37,970 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1978a507 - End of configuration. [testng] [2024-09-12 01:22:38,240] [pool-1-thread-12] Initializing /data/stefan/001_q13.txt: [testng] 01:22:38,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:22:38,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:38,241 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-12_01-22-38.log] [testng] 01:22:38,241 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71e3f986 - End of configuration. [testng] [2024-09-12 01:22:38,368] [pool-1-thread-11] Initializing /data/stefan/001_q05.txt: [testng] 01:22:38,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:22:38,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:38,369 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-12_01-22-38.log] [testng] 01:22:38,370 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75bf3eb3 - End of configuration. [testng] [2024-09-12 01:22:38,480] [pool-1-thread-10] Initializing /data/stefan/001_q16.txt: [testng] 01:22:38,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:22:38,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:38,481 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-12_01-22-38.log] [testng] 01:22:38,481 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e9e0304 - End of configuration. [testng] [2024-09-12 01:22:38,551] [pool-1-thread-9] Initializing /data/stefan/001_q14.txt: [testng] 01:22:38,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:22:38,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:38,552 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-12_01-22-38.log] [testng] 01:22:38,552 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24183548 - End of configuration. [testng] [2024-09-12 01:22:38,631] [pool-1-thread-8] Initializing /data/stefan/001_q11.txt: [testng] 01:22:38,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:22:38,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:38,632 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-12_01-22-38.log] [testng] 01:22:38,633 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d2b1214 - End of configuration. [testng] [2024-09-12 01:22:38,773] [pool-1-thread-7] Initializing /data/stefan/001_q02.txt: [testng] 01:22:38,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:22:38,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:38,774 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-12_01-22-38.log] [testng] 01:22:38,774 |-INFO in ch.qos.logback.core.sift.SiftProcessor@400c7a3d - End of configuration. [testng] [2024-09-12 01:22:38,857] [pool-1-thread-6] Initializing /data/stefan/001_q15.txt: [testng] 01:22:38,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:22:38,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:38,859 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-12_01-22-38.log] [testng] 01:22:38,859 |-INFO in ch.qos.logback.core.sift.SiftProcessor@188e824d - End of configuration. [testng] [2024-09-12 01:22:38,922] [pool-1-thread-5] Initializing /data/stefan/001_q06.txt: [testng] 01:22:38,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:22:38,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:38,924 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-12_01-22-38.log] [testng] 01:22:38,924 |-INFO in ch.qos.logback.core.sift.SiftProcessor@328172fe - End of configuration. [testng] [2024-09-12 01:22:38,977] [pool-1-thread-4] Initializing /data/stefan/001_q03.txt: [testng] 01:22:38,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:22:38,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:38,978 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-12_01-22-38.log] [testng] 01:22:38,978 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bd1b251 - End of configuration. [testng] [2024-09-12 01:22:39,061] [pool-1-thread-3] Initializing /data/stefan/001_q17.txt: [testng] 01:22:39,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:22:39,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:39,062 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-12_01-22-39.log] [testng] 01:22:39,063 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77d93dd2 - End of configuration. [testng] [2024-09-12 01:22:39,188] [pool-1-thread-2] Initializing /data/stefan/001_q10.txt: [testng] 01:22:39,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:22:39,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:39,189 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-12_01-22-39.log] [testng] 01:22:39,190 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11720e40 - End of configuration. [testng] [2024-09-12 01:22:42,682] [pool-1-thread-4] Initializing /data/stefan/001_q04.txt: [testng] [2024-09-12 01:22:42,767] [pool-1-thread-12] Initializing /data/stefan/001_q09.txt: [testng] [2024-09-12 01:22:42,895] [pool-1-thread-7] Initializing /data/stefan/001_q12.txt: [testng] [2024-09-12 01:22:43,030] [pool-1-thread-10] Initializing /data/stefan/001_q01.txt: [testng] [2024-09-12 01:22:43,103] [pool-1-thread-9] Initializing /data/stefan/001_q18.txt: [testng] [2024-09-12 01:22:43,220] [pool-1-thread-6] Initializing /data/stefan/001_q08.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 18 seconds Finished: SUCCESS