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Started by upstream project "BIOFORMATS-test-repo" build number 186 originally caused by: Started by upstream project "Trigger" build number 208 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins15370011621100330796.sh + '[' ariol = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_29388_merge_ci -v /uod/idr/repos/curated/ariol:/data -v /uod/idr-scratch/merge-ci/curated/ariol:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:31:57,247 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:31:57,248 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 01:31:57,248 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:31:57,249 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:31:57,250 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:31:57,250 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:31:57,250 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:31:57,250 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:31:57,251 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:31:57,251 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:31:57,252 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:31:57,252 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:31:57,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:31:57,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:31:57,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:31:57,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:31:57,464 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:31:57,464 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:31:57,465 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:31:57,465 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:31:57,465 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 01:31:57,466 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 01:31:57,466 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 215 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-12 01:31:57,479] [main] java.version = 21 [testng] 01:31:57,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:31:57,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:57,524 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-12_01-31-57.log] [testng] 01:31:57,526 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-09-12 01:31:57,527] [main] testng.directory = /data [testng] [2024-09-12 01:31:57,528] [main] testng.configDirectory = /config [testng] [2024-09-12 01:31:57,538] [main] testng.multiplier = 1.0 [testng] [2024-09-12 01:31:57,538] [main] testng.in-memory = false [testng] [2024-09-12 01:31:57,538] [main] testng.allow-missing = false [testng] [2024-09-12 01:31:57,538] [main] user.language = en [testng] [2024-09-12 01:31:57,539] [main] user.country = ${user.country} [testng] [2024-09-12 01:31:57,539] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-12 01:31:59,336] [main] ---------------------------------------- [testng] [2024-09-12 01:31:59,336] [main] Total files: 33 [testng] [2024-09-12 01:31:59,336] [main] Scan time: 1.797 s (54 ms/file) [testng] [2024-09-12 01:31:59,337] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 26 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-12 01:32:02,392] [pool-1-thread-1] Initializing /data/karen/3AF38F06-D489-4DDA-9806-14A3E12FCE7B.jpg: [testng] 01:32:02,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:32:02,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:02,394 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-12_01-32-02.log] [testng] 01:32:02,394 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c7d6de3 - End of configuration. [testng] [2024-09-12 01:32:02,449] [pool-1-thread-12] Initializing /data/karen/6FC2A99A-C50C-4DD0-B379-FA5595AFD2D6.jpg: [testng] 01:32:02,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:32:02,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:02,454 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-12_01-32-02.log] [testng] 01:32:02,454 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a15dbe6 - End of configuration. [testng] [2024-09-12 01:32:02,523] [pool-1-thread-11] Initializing /data/karen/BB1976B8-C06C-4CFC-8C94-7AEF45E3E191.jpg: [testng] 01:32:02,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:32:02,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:02,524 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-12_01-32-02.log] [testng] 01:32:02,525 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65cb4a20 - End of configuration. [testng] [2024-09-12 01:32:02,577] [pool-1-thread-10] Initializing /data/karen/07AEF934-D3B2-4558-AB51-4BD744DF2DFF.jpg: [testng] 01:32:02,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:32:02,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:02,578 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-12_01-32-02.log] [testng] 01:32:02,579 |-INFO in ch.qos.logback.core.sift.SiftProcessor@95e596e - End of configuration. [testng] [2024-09-12 01:32:02,641] [pool-1-thread-9] Initializing /data/karen/C8026BD0-CBB2-4C73-B69F-9E505B47D46D.jpg: [testng] 01:32:02,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:32:02,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:02,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-12_01-32-02.log] [testng] 01:32:02,642 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66bc78f8 - End of configuration. [testng] [2024-09-12 01:32:02,713] [pool-1-thread-8] Initializing /data/karen/FFB1E060-F4A7-431B-AB93-655CE861D238.jpg: [testng] 01:32:02,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:32:02,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:02,714 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-12_01-32-02.log] [testng] 01:32:02,715 |-INFO in ch.qos.logback.core.sift.SiftProcessor@394abd3c - End of configuration. [testng] [2024-09-12 01:32:02,797] [pool-1-thread-7] Initializing /data/karen/0017007C-2559-4778-962F-8C4951E89A35.jpg: [testng] 01:32:02,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:32:02,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:02,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-12_01-32-02.log] [testng] 01:32:02,799 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f455ebd - End of configuration. [testng] [2024-09-12 01:32:02,870] [pool-1-thread-6] Initializing /data/karen/26D1C9F6-07D0-4D5F-BD3F-1B7ECB1CB011.jpg: [testng] 01:32:02,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:32:02,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:02,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-12_01-32-02.log] [testng] 01:32:02,872 |-INFO in ch.qos.logback.core.sift.SiftProcessor@489d03db - End of configuration. [testng] [2024-09-12 01:32:02,984] [pool-1-thread-5] Initializing /data/karen/DFCC500D-A2DA-4166-909B-87EA112049A3.jpg: [testng] 01:32:02,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:32:02,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:02,985 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-12_01-32-02.log] [testng] 01:32:02,985 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7583aa58 - End of configuration. [testng] [2024-09-12 01:32:03,058] [pool-1-thread-4] Initializing /data/karen/AEC8E959-A1A7-4FCA-A755-F3D9DA44C118.jpg: [testng] 01:32:03,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:32:03,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:03,059 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-12_01-32-03.log] [testng] 01:32:03,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e096fce - End of configuration. [testng] [2024-09-12 01:32:03,117] [pool-1-thread-3] Initializing /data/karen/425C6157-4CFF-434F-8CDC-5D10CE65F168.jpg: [testng] 01:32:03,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:32:03,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:03,119 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-12_01-32-03.log] [testng] 01:32:03,119 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bad5791 - End of configuration. [testng] [2024-09-12 01:32:03,194] [pool-1-thread-2] Initializing /data/karen/CBC73B29-94B4-44E8-BFCD-FC7CE4CF8109.jpg: [testng] 01:32:03,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:32:03,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:03,195 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-12_01-32-03.log] [testng] 01:32:03,196 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72704386 - End of configuration. [testng] [2024-09-12 01:32:06,663] [pool-1-thread-4] Initializing /data/karen/C6492D1B-CEB2-4CBB-B4E8-88B8828E763D.jpg: [testng] [2024-09-12 01:32:06,736] [pool-1-thread-6] Initializing /data/karen/76336D87-715F-4F65-B069-3D3C548625D5.jpg: [testng] [2024-09-12 01:32:06,811] [pool-1-thread-8] Initializing /data/karen/6F44F067-6003-458E-871B-1F9AE1F7C928.jpg: [testng] [2024-09-12 01:32:06,876] [pool-1-thread-9] Initializing /data/karen/04CBE9A7-FA1B-4556-9900-6D869E85FFC7.jpg: [testng] [2024-09-12 01:32:07,046] [pool-1-thread-3] Initializing /data/karen/9C2E458B-73C5-4D03-84F7-060F83B4D95A.jpg: [testng] [2024-09-12 01:32:07,138] [pool-1-thread-12] Initializing /data/karen/94227E77-1CEA-4531-BAD7-1B9152596BC1.jpg: [testng] [2024-09-12 01:32:07,253] [pool-1-thread-10] Initializing /data/karen/FD96C1D1-ABE6-4478-A673-652AA63435F2.jpg: [testng] [2024-09-12 01:32:07,314] [pool-1-thread-1] Initializing /data/karen/612E1340-B118-425D-9B59-FD7860AA2B8F.jpg: [testng] [2024-09-12 01:32:07,443] [pool-1-thread-11] Initializing /data/karen/885FB907-C91D-4E8E-87AB-611D8A61402C.jpg: [testng] [2024-09-12 01:32:07,524] [pool-1-thread-7] Initializing /data/karen/E1445030-57F3-4E15-8BF5-763E0F691B0C.jpg: [testng] [2024-09-12 01:32:07,638] [pool-1-thread-5] Initializing /data/karen/FE241E3F-2DA8-4BA9-99CB-635663EDE04F.jpg: [testng] [2024-09-12 01:32:08,533] [pool-1-thread-2] Initializing /data/karen/E8E773C3-C86B-4457-9D2E-2DFB91EF1714.jpg: [testng] [2024-09-12 01:32:09,546] [pool-1-thread-6] Initializing /data/karen/025B2189-8F22-49E7-A23A-93FAC9BABE18.jpg: [testng] [2024-09-12 01:32:09,616] [pool-1-thread-4] Initializing /data/karen/6F685C73-2CD1-421E-B85B-FC1FA4F3F155.jpg: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1378, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 18 seconds Finished: SUCCESS