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Started by upstream project "BIOFORMATS-test-repo" build number 186 originally caused by: Started by upstream project "Trigger" build number 208 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins16122849177524810626.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_29421_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:03:41,300 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:03:41,302 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 02:03:41,302 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:03:41,303 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:03:41,303 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:03:41,303 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:03:41,304 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:03:41,304 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:03:41,304 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:03:41,305 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:03:41,305 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:03:41,305 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:03:41,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:03:41,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:03:41,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:03:41,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:03:41,500 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:03:41,500 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:03:41,500 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:03:41,501 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:03:41,501 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 02:03:41,502 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 02:03:41,502 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 198 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-12 02:03:41,512] [main] java.version = 21 [testng] 02:03:41,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:03:41,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:41,557 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-12_02-03-41.log] [testng] 02:03:41,558 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-09-12 02:03:41,560] [main] testng.directory = /data [testng] [2024-09-12 02:03:41,560] [main] testng.configDirectory = /config [testng] [2024-09-12 02:03:41,568] [main] testng.multiplier = 1.0 [testng] [2024-09-12 02:03:41,569] [main] testng.in-memory = false [testng] [2024-09-12 02:03:41,569] [main] testng.allow-missing = false [testng] [2024-09-12 02:03:41,569] [main] user.language = en [testng] [2024-09-12 02:03:41,569] [main] user.country = ${user.country} [testng] [2024-09-12 02:03:41,569] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-12 02:11:36,472] [main] ---------------------------------------- [testng] [2024-09-12 02:11:36,472] [main] Total files: 7329 [testng] [2024-09-12 02:11:36,473] [main] Scan time: 474.902 s (64 ms/file) [testng] [2024-09-12 02:11:36,474] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-12 02:16:23,413] [pool-1-thread-1] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] 02:16:23,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:16:23,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:23,417 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-12_02-16-23.log] [testng] 02:16:23,417 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3109b4ec - End of configuration. [testng] [2024-09-12 02:16:23,570] [pool-1-thread-12] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] 02:16:23,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:16:23,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:23,572 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-12_02-16-23.log] [testng] 02:16:23,573 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c2e2766 - End of configuration. [testng] [2024-09-12 02:16:23,751] [pool-1-thread-11] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] 02:16:23,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:16:23,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:23,753 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-12_02-16-23.log] [testng] 02:16:23,754 |-INFO in ch.qos.logback.core.sift.SiftProcessor@737dfdcc - End of configuration. [testng] [2024-09-12 02:16:23,954] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] 02:16:23,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:16:23,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:23,957 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-12_02-16-23.log] [testng] 02:16:23,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cf797b0 - End of configuration. [testng] [2024-09-12 02:16:24,144] [pool-1-thread-9] Initializing /data/graham/G_Wright deconvolved.stk: [testng] 02:16:24,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:16:24,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:24,146 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-12_02-16-24.log] [testng] 02:16:24,147 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5958c97f - End of configuration. [testng] [2024-09-12 02:16:24,321] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] 02:16:24,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:16:24,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:24,322 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-12_02-16-24.log] [testng] 02:16:24,323 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38deaca4 - End of configuration. [testng] [2024-09-12 02:16:24,479] [pool-1-thread-7] Initializing /data/qa-16915/m-01.tif: [testng] 02:16:24,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:16:24,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:24,480 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-12_02-16-24.log] [testng] 02:16:24,481 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f2a1caa - End of configuration. [testng] [2024-09-12 02:16:25,173] [pool-1-thread-6] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] 02:16:25,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:16:25,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:25,175 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-12_02-16-25.log] [testng] 02:16:25,175 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d3450b4 - End of configuration. [testng] [2024-09-12 02:16:25,264] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] 02:16:25,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:16:25,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:25,266 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-12_02-16-25.log] [testng] 02:16:25,266 |-INFO in ch.qos.logback.core.sift.SiftProcessor@104255ec - End of configuration. [testng] [2024-09-12 02:16:25,932] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] 02:16:25,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:16:25,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:25,933 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-12_02-16-25.log] [testng] 02:16:25,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ce54e01 - End of configuration. [testng] [2024-09-12 02:16:26,033] [pool-1-thread-3] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] 02:16:26,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:16:26,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:26,034 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-12_02-16-26.log] [testng] 02:16:26,035 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34ea65de - End of configuration. [testng] [2024-09-12 02:16:26,180] [pool-1-thread-2] Initializing /data/heiko/sample_3x3.stk: [testng] 02:16:26,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:16:26,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:26,181 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-12_02-16-26.log] [testng] 02:16:26,182 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71c1cf6e - End of configuration. [testng] [2024-09-12 02:16:29,431] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-09-12 02:16:30,472] [pool-1-thread-9] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-09-12 02:16:30,884] [pool-1-thread-8] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-09-12 02:16:31,190] [pool-1-thread-6] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-09-12 02:16:31,421] [pool-1-thread-11] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-09-12 02:16:31,559] [pool-1-thread-1] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-09-12 02:16:31,682] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-09-12 02:16:31,865] [pool-1-thread-4] Used files list does not include base file [testng] [2024-09-12 02:16:31,867] [pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-09-12 02:16:33,101] [pool-1-thread-2] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-09-12 02:16:39,460] [pool-1-thread-7] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-09-12 02:16:39,648] [pool-1-thread-12] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-09-12 02:16:39,969] [pool-1-thread-5] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-09-12 02:16:40,448] [pool-1-thread-9] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-09-12 02:16:40,919] [pool-1-thread-3] Initializing /data/dave/Z Series.stk: [testng] [2024-09-12 02:16:41,445] [pool-1-thread-8] Initializing /data/jerome/deconv.STK: [testng] [2024-09-12 02:16:42,080] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-09-12 02:16:42,362] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-09-12 02:16:42,720] [pool-1-thread-6] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-09-12 02:16:43,556] [pool-1-thread-3] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-09-12 02:16:44,567] [pool-1-thread-8] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-09-12 02:16:45,104] [pool-1-thread-12] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-09-12 02:16:45,511] [pool-1-thread-11] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-09-12 02:16:47,236] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-09-12 02:16:48,174] [pool-1-thread-8] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-09-12 02:16:49,430] [pool-1-thread-7] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-09-12 02:16:50,282] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-09-12 02:16:50,800] [pool-1-thread-11] Used files list does not include base file [testng] [2024-09-12 02:16:51,302] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-09-12 02:16:51,925] [pool-1-thread-1] Used files list does not include base file [testng] [2024-09-12 02:16:52,869] [pool-1-thread-6] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-09-12 02:16:56,197] [pool-1-thread-4] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-09-12 02:16:56,714] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-09-12 02:16:56,998] [pool-1-thread-12] Used files list does not include base file [testng] [2024-09-12 02:16:57,001] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-09-12 02:16:58,641] [pool-1-thread-11] Initializing /data/samples/zserEight.stk: [testng] [2024-09-12 02:16:58,834] [pool-1-thread-7] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-09-12 02:17:00,999] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-12 02:17:01,334] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-09-12 02:17:01,542] [pool-1-thread-10] Used files list does not include base file [testng] [2024-09-12 02:17:05,678] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-09-12 02:17:06,574] [pool-1-thread-11] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-09-12 02:17:09,032] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-09-12 02:17:09,294] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-09-12 02:17:10,011] [pool-1-thread-11] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-09-12 02:17:11,586] [pool-1-thread-4] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-09-12 02:17:23,923] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-09-12 02:17:24,509] [pool-1-thread-5] Initializing /data/qa-16915/m-04.tif: [testng] [2024-09-12 02:17:25,084] [pool-1-thread-12] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-09-12 02:17:25,371] [pool-1-thread-1] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-09-12 02:17:25,605] [pool-1-thread-10] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-09-12 02:17:26,586] [pool-1-thread-8] Initializing /data/samples/10xcalib.stk: [testng] [2024-09-12 02:17:29,289] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-12 02:17:29,481] [pool-1-thread-3] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-09-12 02:17:30,686] [pool-1-thread-6] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-09-12 02:17:30,882] [pool-1-thread-11] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-09-12 02:17:31,230] [pool-1-thread-8] Initializing /data/josh/2101to600astk.stk: [testng] [2024-09-12 02:17:42,871] [pool-1-thread-1] Initializing /data/cumol-test-series/23.001: [testng] [2024-09-12 02:17:43,281] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-09-12 02:17:43,812] [pool-1-thread-12] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-09-12 02:17:44,378] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-09-12 02:17:45,398] [pool-1-thread-6] Initializing /data/ascb/mt aim.tif: [testng] [2024-09-12 02:17:45,733] [pool-1-thread-5] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-09-12 02:17:45,844] [pool-1-thread-3] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2024-09-12 02:17:46,067] [pool-1-thread-9] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-09-12 02:17:47,381] [pool-1-thread-11] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-09-12 02:17:47,947] [pool-1-thread-1] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-09-12 02:17:48,219] [pool-1-thread-12] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-09-12 02:17:48,331] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-09-12 02:17:49,087] [pool-1-thread-11] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-09-12 02:17:50,484] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-09-12 02:17:50,703] [pool-1-thread-6] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-09-12 02:17:50,953] [pool-1-thread-11] Initializing /data/josh/2101to800.stk: [testng] [2024-09-12 02:17:52,745] [pool-1-thread-5] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-09-12 02:17:55,430] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-09-12 02:17:55,597] [pool-1-thread-7] Initializing /data/josh/2101to600e.stk: [testng] [2024-09-12 02:17:58,444] [pool-1-thread-10] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-09-12 02:17:59,101] [pool-1-thread-6] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-09-12 02:18:00,898] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-09-12 02:18:01,070] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-09-12 02:18:01,906] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-09-12 02:18:02,527] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-12 02:18:02,814] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-09-12 02:18:04,749] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-09-12 02:18:05,539] [pool-1-thread-1] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-09-12 02:18:06,010] [pool-1-thread-3] Initializing /data/josh/2101to400astk.stk: [testng] [2024-09-12 02:18:11,329] [pool-1-thread-1] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-09-12 02:18:11,644] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-09-12 02:18:11,878] [pool-1-thread-10] Used files list does not include base file [testng] [2024-09-12 02:18:13,374] [pool-1-thread-11] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-09-12 02:18:14,697] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-12 02:18:14,891] [pool-1-thread-7] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-09-12 02:18:17,812] [pool-1-thread-12] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-09-12 02:18:19,108] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-09-12 02:18:21,465] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-09-12 02:18:21,653] [pool-1-thread-10] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-09-12 02:18:23,545] [pool-1-thread-12] Initializing /data/alex/Selected FITC.stk: [testng] [2024-09-12 02:18:24,414] [pool-1-thread-11] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-09-12 02:18:24,572] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-09-12 02:18:24,659] [pool-1-thread-10] Used files list does not include base file [testng] [2024-09-12 02:18:25,827] [pool-1-thread-12] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-09-12 02:18:25,986] [pool-1-thread-10] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-09-12 02:18:40,128] [pool-1-thread-11] Initializing /data/josh/2101to600f.stk: [testng] [2024-09-12 02:18:44,616] [pool-1-thread-3] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-09-12 02:18:44,886] [pool-1-thread-12] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-09-12 02:18:45,037] [pool-1-thread-1] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-09-12 02:18:46,112] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-09-12 02:18:46,245] [pool-1-thread-7] Used files list does not include base file [testng] [2024-09-12 02:18:46,484] [pool-1-thread-12] Initializing /data/qa-16915/m-02.tif: [testng] [2024-09-12 02:18:48,545] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-09-12 02:18:48,737] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-09-12 02:18:50,335] [pool-1-thread-3] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-09-12 02:18:51,243] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-09-12 02:18:51,570] [pool-1-thread-4] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-09-12 02:18:53,321] [pool-1-thread-12] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-09-12 02:18:53,545] [pool-1-thread-1] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-09-12 02:18:54,316] [pool-1-thread-4] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-09-12 02:18:55,512] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-09-12 02:18:55,750] [pool-1-thread-7] Used files list does not include base file [testng] [2024-09-12 02:18:56,161] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-09-12 02:18:56,741] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-09-12 02:18:57,207] [pool-1-thread-4] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-09-12 02:18:58,273] [pool-1-thread-3] Initializing /data/samples/zserSixteen.stk: [testng] [2024-09-12 02:18:59,502] [pool-1-thread-3] Initializing 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[pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-09-12 02:19:07,313] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-12 02:19:07,936] [pool-1-thread-7] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-09-12 02:19:08,115] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-09-12 02:19:09,376] [pool-1-thread-8] Initializing /data/samples/10xcalib.tif: [testng] [2024-09-12 02:19:09,969] [pool-1-thread-7] Initializing /data/ascb/golgi marker.tif: [testng] [2024-09-12 02:19:10,148] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-09-12 02:19:10,563] [pool-1-thread-5] Initializing /data/qa-16887/m-01.tif: [testng] [2024-09-12 02:19:10,957] [pool-1-thread-8] Initializing 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/data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-09-12 02:19:16,471] [pool-1-thread-5] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-09-12 02:19:16,901] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-12 02:19:17,054] [pool-1-thread-4] Initializing /data/grant/X.STK: [testng] [2024-09-12 02:19:17,378] [pool-1-thread-11] Initializing /data/jae/RGB_s34.tif: [testng] [2024-09-12 02:19:17,900] [pool-1-thread-5] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-09-12 02:19:19,259] [pool-1-thread-8] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-09-12 02:19:20,046] [pool-1-thread-4] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-09-12 02:19:20,568] [pool-1-thread-12] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-09-12 02:19:20,714] [pool-1-thread-11] Initializing /data/samples/zser24.stk: [testng] [2024-09-12 02:19:21,119] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-09-12 02:19:21,285] [pool-1-thread-8] Used files list does not include base file [testng] [2024-09-12 02:19:21,662] [pool-1-thread-3] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-09-12 02:19:21,854] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-09-12 02:19:22,080] [pool-1-thread-5] Used files list does not include base file [testng] [2024-09-12 02:19:22,090] [pool-1-thread-11] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-09-12 02:19:23,608] [pool-1-thread-12] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-09-12 02:19:24,636] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-09-12 02:19:24,664] [pool-1-thread-11] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-09-12 02:19:25,526] [pool-1-thread-4] Initializing /data/samples/zseries.stk: [testng] [2024-09-12 02:19:25,998] [pool-1-thread-3] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-09-12 02:19:26,587] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-12 02:19:27,075] [pool-1-thread-4] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-09-12 02:19:28,615] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-09-12 02:19:29,152] [pool-1-thread-4] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-09-12 02:19:29,415] [pool-1-thread-8] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-09-12 02:19:29,620] [pool-1-thread-5] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-09-12 02:19:29,928] [pool-1-thread-4] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-09-12 02:19:30,332] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-09-12 02:19:30,893] [pool-1-thread-3] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-09-12 02:19:31,527] [pool-1-thread-8] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-09-12 02:19:32,486] [pool-1-thread-11] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-09-12 02:19:33,094] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-09-12 02:19:33,185] [pool-1-thread-5] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-09-12 02:19:33,703] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-09-12 02:19:37,805] [pool-1-thread-3] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-09-12 02:19:38,157] [pool-1-thread-11] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-09-12 02:19:39,322] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-09-12 02:19:40,015] [pool-1-thread-6] Initializing /data/steve/Experiment2.tif: [testng] [2024-09-12 02:19:40,252] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-09-12 02:19:40,414] [pool-1-thread-5] Used files list does not include base file [testng] [2024-09-12 02:19:40,423] [pool-1-thread-3] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-09-12 02:19:42,022] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-09-12 02:19:42,281] [pool-1-thread-6] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-09-12 02:19:43,347] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-09-12 02:19:43,540] [pool-1-thread-1] Used files list does not include base file [testng] [2024-09-12 02:19:46,180] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-09-12 02:19:49,220] [pool-1-thread-1] Initializing /data/thomas/test.tif: [testng] [2024-09-12 02:19:50,276] [pool-1-thread-5] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-09-12 02:19:51,088] [pool-1-thread-12] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-09-12 02:19:51,316] [pool-1-thread-1] Initializing /data/david/tl4.tif: [testng] [2024-09-12 02:19:53,320] [pool-1-thread-5] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-09-12 02:19:53,822] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-09-12 02:19:54,484] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-09-12 02:19:55,482] [pool-1-thread-5] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-09-12 02:19:56,266] [pool-1-thread-6] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-09-12 02:19:56,603] [pool-1-thread-12] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-09-12 02:19:57,438] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-09-12 02:19:57,537] [pool-1-thread-5] Used files list does not include base file [testng] [2024-09-12 02:19:58,503] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-09-12 02:19:58,592] [pool-1-thread-6] Used files list does not include base file [testng] [2024-09-12 02:19:59,174] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-09-12 02:19:59,395] [pool-1-thread-1] Used files list does not include base file [testng] [2024-09-12 02:19:59,492] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-09-12 02:19:59,734] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-09-12 02:19:59,964] [pool-1-thread-12] Used files list does not include base file [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 33 minutes 18 seconds Finished: SUCCESS