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Started by upstream project "BIOFORMATS-test-repo" build number 187 originally caused by: Started by upstream project "Trigger" build number 209 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins3852693417602966437.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_29589_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:18:10,037 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:18:10,038 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:18:10,038 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:18:10,039 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:18:10,040 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:18:10,040 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:18:10,040 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:18:10,040 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:18:10,041 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:18:10,041 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:18:10,041 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:18:10,041 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:18:10,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:18:10,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:18:10,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:18:10,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:18:10,338 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:18:10,338 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:18:10,338 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:18:10,339 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:18:10,339 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:18:10,340 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:18:10,340 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 299 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-13 02:18:10,353] [main] java.version = 1.8.0_342 [testng] 02:18:10,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:18:10,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:10,408 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-13_02-18-10.log] [testng] 02:18:10,410 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-09-13 02:18:10,412] [main] testng.directory = /data [testng] [2024-09-13 02:18:10,412] [main] testng.configDirectory = /config [testng] [2024-09-13 02:18:10,425] [main] testng.multiplier = 1.0 [testng] [2024-09-13 02:18:10,425] [main] testng.in-memory = false [testng] [2024-09-13 02:18:10,425] [main] testng.allow-missing = false [testng] [2024-09-13 02:18:10,426] [main] user.language = en [testng] [2024-09-13 02:18:10,426] [main] user.country = ${user.country} [testng] [2024-09-13 02:18:10,426] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-09-13 02:18:27,956] [main] ---------------------------------------- [testng] [2024-09-13 02:18:27,956] [main] Total files: 268 [testng] [2024-09-13 02:18:27,957] [main] Scan time: 17.53 s (65 ms/file) [testng] [2024-09-13 02:18:27,957] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-13 02:18:43,220] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] 02:18:43,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:18:43,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:43,221 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-13_02-18-43.log] [testng] 02:18:43,222 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50f51192 - End of configuration. [testng] [2024-09-13 02:18:43,252] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] 02:18:43,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:18:43,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:43,253 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-13_02-18-43.log] [testng] 02:18:43,254 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5613a30c - End of configuration. [testng] [2024-09-13 02:18:43,272] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] 02:18:43,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:18:43,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:43,273 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-13_02-18-43.log] [testng] 02:18:43,274 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f7c2687 - End of configuration. [testng] [2024-09-13 02:18:43,293] [pool-1-thread-10] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] 02:18:43,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:18:43,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:43,294 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-13_02-18-43.log] [testng] 02:18:43,294 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d97f6f0 - End of configuration. [testng] [2024-09-13 02:18:43,345] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] 02:18:43,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:18:43,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:43,346 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-13_02-18-43.log] [testng] 02:18:43,346 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bc4d1b4 - End of configuration. [testng] [2024-09-13 02:18:43,363] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] 02:18:43,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:18:43,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:43,365 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-13_02-18-43.log] [testng] 02:18:43,366 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f68a534 - End of configuration. [testng] [2024-09-13 02:18:43,389] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] 02:18:43,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:18:43,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:43,390 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-13_02-18-43.log] [testng] 02:18:43,390 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60863b05 - End of configuration. [testng] [2024-09-13 02:18:43,431] [pool-1-thread-6] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] 02:18:43,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:18:43,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:43,432 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-13_02-18-43.log] [testng] 02:18:43,432 |-INFO in ch.qos.logback.core.sift.SiftProcessor@486b5d0b - End of configuration. [testng] [2024-09-13 02:18:43,510] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] 02:18:43,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:18:43,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:43,511 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-13_02-18-43.log] [testng] 02:18:43,512 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1651098a - End of configuration. [testng] [2024-09-13 02:18:43,588] [pool-1-thread-4] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] 02:18:43,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:18:43,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:43,589 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-13_02-18-43.log] [testng] 02:18:43,589 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c16d15f - End of configuration. [testng] [2024-09-13 02:18:43,645] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] 02:18:43,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:18:43,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:43,646 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-13_02-18-43.log] [testng] 02:18:43,646 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f0bbd14 - End of configuration. [testng] [2024-09-13 02:18:43,667] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] 02:18:43,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:18:43,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:43,668 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-13_02-18-43.log] [testng] 02:18:43,668 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dfe921 - End of configuration. [testng] [2024-09-13 02:18:44,838] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-09-13 02:18:44,863] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-09-13 02:18:44,882] [pool-1-thread-9] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-09-13 02:18:44,924] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-09-13 02:18:44,981] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-09-13 02:18:44,997] [pool-1-thread-8] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-09-13 02:18:45,072] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-09-13 02:18:45,086] [pool-1-thread-1] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-09-13 02:18:45,199] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-09-13 02:18:45,227] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-09-13 02:18:45,558] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-09-13 02:18:45,801] [pool-1-thread-4] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-09-13 02:18:45,871] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-09-13 02:18:45,921] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-09-13 02:18:45,937] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-09-13 02:18:46,190] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-09-13 02:18:46,270] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-09-13 02:18:46,313] [pool-1-thread-9] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-09-13 02:18:46,362] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] [2024-09-13 02:18:46,391] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-09-13 02:18:46,684] [pool-1-thread-10] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-09-13 02:18:46,776] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-09-13 02:18:46,793] [pool-1-thread-2] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-09-13 02:18:46,823] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-09-13 02:18:46,988] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-09-13 02:18:47,068] [pool-1-thread-4] Initializing /data/steve/FITS/M104.fits: [testng] [2024-09-13 02:18:47,146] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-09-13 02:18:47,254] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-09-13 02:18:47,293] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-09-13 02:18:47,323] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-09-13 02:18:47,347] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-09-13 02:18:47,375] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2024-09-13 02:18:47,480] [pool-1-thread-4] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-09-13 02:18:47,575] [pool-1-thread-1] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-09-13 02:18:47,758] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-09-13 02:18:47,870] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-09-13 02:18:47,926] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-09-13 02:18:47,991] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] [2024-09-13 02:18:48,021] [pool-1-thread-3] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-09-13 02:18:48,059] [pool-1-thread-5] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-09-13 02:18:48,266] [pool-1-thread-3] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-09-13 02:18:48,300] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-09-13 02:18:48,373] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-09-13 02:18:48,491] [pool-1-thread-7] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-09-13 02:18:48,526] [pool-1-thread-2] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-09-13 02:18:48,566] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-09-13 02:18:48,589] [pool-1-thread-6] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-09-13 02:18:48,671] [pool-1-thread-10] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-09-13 02:18:48,715] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-09-13 02:18:48,731] [pool-1-thread-4] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-09-13 02:18:48,881] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-09-13 02:18:48,946] [pool-1-thread-9] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-09-13 02:18:48,961] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-09-13 02:18:49,050] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-09-13 02:18:49,083] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-09-13 02:18:49,164] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-09-13 02:18:49,192] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-09-13 02:18:49,330] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-09-13 02:18:49,388] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-09-13 02:18:49,428] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-09-13 02:18:49,543] [pool-1-thread-5] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-09-13 02:18:49,584] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-09-13 02:18:49,709] [pool-1-thread-1] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-09-13 02:18:49,756] [pool-1-thread-12] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-09-13 02:18:49,824] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-09-13 02:18:49,875] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-09-13 02:18:49,920] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-09-13 02:18:49,930] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-09-13 02:18:50,165] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-09-13 02:18:50,264] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-09-13 02:18:50,401] [pool-1-thread-8] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-09-13 02:18:50,476] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-09-13 02:18:50,537] [pool-1-thread-6] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-09-13 02:18:50,581] [pool-1-thread-5] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2024-09-13 02:18:50,675] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-09-13 02:18:50,725] [pool-1-thread-10] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-09-13 02:18:50,746] [pool-1-thread-12] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-09-13 02:18:50,787] [pool-1-thread-2] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-09-13 02:18:50,815] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-09-13 02:18:50,854] [pool-1-thread-1] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2024-09-13 02:18:51,135] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-09-13 02:18:51,223] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-09-13 02:18:51,244] [pool-1-thread-3] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-09-13 02:18:51,306] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-09-13 02:18:51,341] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-09-13 02:18:51,388] [pool-1-thread-12] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-09-13 02:18:51,437] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-09-13 02:18:51,496] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-09-13 02:18:51,514] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-09-13 02:18:51,542] [pool-1-thread-4] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-09-13 02:18:51,547] [pool-1-thread-5] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-09-13 02:18:51,616] [pool-1-thread-8] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-09-13 02:18:51,659] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-09-13 02:18:51,802] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-09-13 02:18:51,815] [pool-1-thread-4] Initializing /data/steve/FITS/M13.fits: [testng] [2024-09-13 02:18:51,847] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-09-13 02:18:51,967] [pool-1-thread-1] Initializing /data/steve/FITS/M51.fits: [testng] [2024-09-13 02:18:52,078] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-09-13 02:18:52,112] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-09-13 02:18:52,175] [pool-1-thread-7] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-09-13 02:18:52,217] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-09-13 02:18:52,231] [pool-1-thread-9] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-09-13 02:18:52,271] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-09-13 02:18:52,286] [pool-1-thread-4] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-09-13 02:18:52,315] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-09-13 02:18:52,349] [pool-1-thread-10] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-09-13 02:18:52,373] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-09-13 02:18:52,390] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-09-13 02:18:52,519] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-09-13 02:18:52,576] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-09-13 02:18:52,615] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-09-13 02:18:52,653] [pool-1-thread-4] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-09-13 02:18:52,777] [pool-1-thread-6] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-09-13 02:18:52,852] [pool-1-thread-5] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-09-13 02:18:52,918] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-09-13 02:18:52,938] [pool-1-thread-11] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-09-13 02:18:53,114] [pool-1-thread-10] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-09-13 02:18:53,126] [pool-1-thread-1] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-09-13 02:18:53,155] [pool-1-thread-9] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-09-13 02:18:53,174] [pool-1-thread-8] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-09-13 02:18:53,238] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-09-13 02:18:53,342] [pool-1-thread-6] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-09-13 02:18:53,383] [pool-1-thread-4] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-09-13 02:18:53,462] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-09-13 02:18:53,536] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-09-13 02:18:53,586] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-09-13 02:18:53,620] [pool-1-thread-3] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-09-13 02:18:53,679] [pool-1-thread-1] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-09-13 02:18:53,718] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-09-13 02:18:53,773] [pool-1-thread-12] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-09-13 02:18:53,887] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-09-13 02:18:54,089] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-09-13 02:18:54,137] [pool-1-thread-8] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-09-13 02:18:54,177] [pool-1-thread-2] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-09-13 02:18:54,243] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-09-13 02:18:54,341] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2024-09-13 02:18:54,421] [pool-1-thread-12] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-09-13 02:18:54,483] [pool-1-thread-1] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-09-13 02:18:54,675] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-09-13 02:18:54,896] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-09-13 02:18:54,917] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-09-13 02:18:54,943] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-09-13 02:18:55,039] [pool-1-thread-7] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-09-13 02:18:55,109] [pool-1-thread-2] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-09-13 02:18:55,256] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-09-13 02:18:55,362] [pool-1-thread-11] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-09-13 02:18:55,453] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-09-13 02:18:55,493] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 50 seconds Finished: SUCCESS