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Started by upstream project "BIOFORMATS-test-repo" build number 187 originally caused by: Started by upstream project "Trigger" build number 209 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins15235655172147476365.sh + '[' mng = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_29608_merge_ci -v /uod/idr/repos/curated/mng:/data -v /uod/idr-scratch/merge-ci/curated/mng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:29:31,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:29:31,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:29:31,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:29:31,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:29:31,666 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:29:31,666 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:29:31,666 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:29:31,667 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:29:31,667 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 02:29:31,668 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 02:29:31,669 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 440 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-13 02:29:31,683] [main] java.version = 1.8.0_342 [testng] 02:29:31,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:29:31,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:31,746 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-13_02-29-31.log] [testng] 02:29:31,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-09-13 02:29:31,750] [main] testng.directory = /data [testng] [2024-09-13 02:29:31,751] [main] testng.configDirectory = /config [testng] [2024-09-13 02:29:31,765] [main] testng.multiplier = 1.0 [testng] [2024-09-13 02:29:31,766] [main] testng.in-memory = false [testng] [2024-09-13 02:29:31,766] [main] testng.allow-missing = false [testng] [2024-09-13 02:29:31,766] [main] user.language = en [testng] [2024-09-13 02:29:31,766] [main] user.country = ${user.country} [testng] [2024-09-13 02:29:31,766] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-09-13 02:29:33,394] [main] ---------------------------------------- [testng] [2024-09-13 02:29:33,394] [main] Total files: 78 [testng] [2024-09-13 02:29:33,394] [main] Scan time: 1.628 s (20 ms/file) [testng] [2024-09-13 02:29:33,394] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 78 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-13 02:29:50,802] [pool-1-thread-1] Initializing /data/images/Delta-gray2.mng: [testng] 02:29:50,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:29:50,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:50,803 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-13_02-29-50.log] [testng] 02:29:50,804 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a6616fd - End of configuration. [testng] [2024-09-13 02:29:50,924] [pool-1-thread-12] Initializing /data/images/png/Delta-grayFour.png: [testng] 02:29:50,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:29:50,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:50,926 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-13_02-29-50.log] [testng] 02:29:50,927 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a1d7b7e - End of configuration. [testng] [2024-09-13 02:29:50,937] [pool-1-thread-11] Initializing /data/images/scrollThree.mng: [testng] 02:29:50,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:29:50,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:50,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-13_02-29-50.log] [testng] 02:29:50,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@572f1995 - End of configuration. [testng] [2024-09-13 02:29:50,977] [pool-1-thread-10] Initializing /data/images/Delta-rgb-a8b.mng: [testng] 02:29:50,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:29:50,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:50,978 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-13_02-29-50.log] [testng] 02:29:50,978 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1000b974 - End of configuration. [testng] [2024-09-13 02:29:51,026] [pool-1-thread-9] Initializing /data/images/MNGTERM3-0.mng: [testng] 02:29:51,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:29:51,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:51,028 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-13_02-29-51.log] [testng] 02:29:51,028 |-INFO in ch.qos.logback.core.sift.SiftProcessor@470366f6 - End of configuration. [testng] [2024-09-13 02:29:51,059] [pool-1-thread-8] Initializing /data/images/MNGPAST_eightA.mng: [testng] 02:29:51,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:29:51,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:51,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-13_02-29-51.log] [testng] 02:29:51,061 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a6fe2cb - End of configuration. [testng] [2024-09-13 02:29:51,094] [pool-1-thread-7] Initializing /data/images/MNGTERM3-4.mng: [testng] 02:29:51,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:29:51,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:51,095 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-13_02-29-51.log] [testng] 02:29:51,096 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d7e9844 - End of configuration. [testng] [2024-09-13 02:29:51,121] [pool-1-thread-6] Initializing /data/roger/Well C4_01.mng: [testng] 02:29:51,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:29:51,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:51,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-13_02-29-51.log] [testng] 02:29:51,123 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f237891 - End of configuration. [testng] [2024-09-13 02:29:54,335] [pool-1-thread-5] Initializing /data/images/PNGBASxx.mng: [testng] 02:29:54,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:29:54,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:54,337 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-13_02-29-54.log] [testng] 02:29:54,337 |-INFO in ch.qos.logback.core.sift.SiftProcessor@355eb227 - End of configuration. [testng] [2024-09-13 02:29:54,380] [pool-1-thread-4] Initializing /data/images/png/Delta-rgb-aEightB.png: [testng] 02:29:54,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:29:54,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:54,382 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-13_02-29-54.log] [testng] 02:29:54,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fac623 - End of configuration. [testng] [2024-09-13 02:29:54,388] [pool-1-thread-3] Initializing /data/images/MNGTERM2.mng: [testng] 02:29:54,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:29:54,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:54,389 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-13_02-29-54.log] [testng] 02:29:54,390 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4458edf6 - End of configuration. [testng] [2024-09-13 02:29:54,449] [pool-1-thread-2] Initializing /data/images/Delta-gray-a8w.mng: [testng] 02:29:54,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:29:54,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:29:54,450 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-13_02-29-54.log] [testng] 02:29:54,451 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cf7cd53 - End of configuration. [testng] [2024-09-13 02:29:56,124] [pool-1-thread-12] Initializing /data/images/PROM-BASI-zfil.mng: [testng] [2024-09-13 02:29:56,157] [pool-1-thread-4] Initializing /data/images/png/Delta-rgb-aEightW.png: [testng] [2024-09-13 02:29:56,166] [pool-1-thread-8] Initializing /data/images/Waves1.mng: [testng] [2024-09-13 02:29:56,194] [pool-1-thread-3] Initializing /data/images/I01SCRL.mng: [testng] [2024-09-13 02:29:56,217] [pool-1-thread-9] Initializing /data/images/Delta-gray-a16b.mng: [testng] [2024-09-13 02:29:56,251] [pool-1-thread-7] Initializing /data/images/PNGCMSPx.mng: [testng] [2024-09-13 02:29:56,280] [pool-1-thread-11] Initializing /data/images/png/Delta-grayTwo.png: [testng] [2024-09-13 02:29:56,285] [pool-1-thread-1] Initializing /data/images/png/Delta-graySixteen.png: [testng] [2024-09-13 02:29:56,292] [pool-1-thread-2] Initializing /data/images/MNGPAST16a.mng: [testng] [2024-09-13 02:29:56,308] [pool-1-thread-10] Initializing /data/images/png/MNGPAST-eightB.png: [testng] [2024-09-13 02:29:56,316] [pool-1-thread-5] Initializing /data/images/Waves2.mng: [testng] [2024-09-13 02:29:56,979] [pool-1-thread-1] Initializing /data/images/png/MNGPAST16b.png: [testng] [2024-09-13 02:29:56,986] [pool-1-thread-10] Initializing /data/images/png/Delta-rgb-a16b.png: [testng] [2024-09-13 02:29:56,990] [pool-1-thread-4] Initializing /data/images/MNGTERM3-1.mng: [testng] [2024-09-13 02:29:57,056] [pool-1-thread-11] Initializing /data/images/Delta-rgb-a8w.mng: [testng] [2024-09-13 02:29:57,288] [pool-1-thread-5] Initializing /data/images/png/Delta-rgbEight.png: [testng] [2024-09-13 02:29:57,298] [pool-1-thread-8] Initializing /data/images/scrollTwo.mng: [testng] [2024-09-13 02:29:57,349] [pool-1-thread-2] Initializing /data/images/scrollOne.mng: [testng] [2024-09-13 02:29:57,369] [pool-1-thread-3] Initializing /data/roger/Well D2_01.mng: [testng] [2024-09-13 02:30:00,315] [pool-1-thread-1] Initializing /data/images/png/Delta-grayOne.png: [testng] [2024-09-13 02:30:00,337] [pool-1-thread-7] Initializing /data/images/png/Delta-rgb-a16w.png: [testng] [2024-09-13 02:30:00,343] [pool-1-thread-9] Initializing /data/images/PROM-BASN-zfil.mng: [testng] [2024-09-13 02:30:00,373] [pool-1-thread-12] Initializing /data/images/MNGTERM3-7.mng: [testng] [2024-09-13 02:30:00,423] [pool-1-thread-10] Initializing /data/images/australia1.mng: [testng] [2024-09-13 02:30:00,518] [pool-1-thread-4] Initializing /data/images/DUTCH-two.mng: [testng] [2024-09-13 02:30:00,586] [pool-1-thread-5] Initializing /data/images/MNGPAST16b.mng: [testng] [2024-09-13 02:30:00,659] [pool-1-thread-1] Initializing /data/images/png/MNGPAST-eightA.png: [testng] [2024-09-13 02:30:00,703] [pool-1-thread-7] Initializing /data/images/png/PROM-repl.png: [testng] [2024-09-13 02:30:00,733] [pool-1-thread-2] Initializing /data/images/png/Delta-gray-a16b.png: [testng] [2024-09-13 02:30:00,756] [pool-1-thread-11] Initializing /data/images/MNGTERM3-3.mng: [testng] [2024-09-13 02:30:00,848] [pool-1-thread-12] Initializing /data/images/PNGCH-CC.mng: [testng] [2024-09-13 02:30:00,949] [pool-1-thread-1] Initializing /data/images/home.mng: [testng] [2024-09-13 02:30:00,999] [pool-1-thread-9] Initializing /data/images/Delta-gray16.mng: [testng] [2024-09-13 02:30:01,051] [pool-1-thread-10] Initializing /data/roger/Well B3_01.mng: [testng] [2024-09-13 02:30:04,016] [pool-1-thread-4] Initializing /data/images/Delta-rgb-a16b.mng: [testng] [2024-09-13 02:30:04,045] [pool-1-thread-8] Initializing /data/images/PNGFxxxx.mng: [testng] [2024-09-13 02:30:04,065] [pool-1-thread-7] Initializing /data/images/MNGTERM0.mng: [testng] [2024-09-13 02:30:04,087] [pool-1-thread-2] Initializing /data/images/Waves3.mng: [testng] [2024-09-13 02:30:04,104] [pool-1-thread-5] Initializing /data/images/MNGTERM3-6.mng: [testng] [2024-09-13 02:30:04,306] [pool-1-thread-11] Initializing /data/roger/Well E6_01.mng: [testng] [2024-09-13 02:30:07,302] [pool-1-thread-12] Initializing /data/images/Delta-rgbEight.mng: [testng] [2024-09-13 02:30:07,361] [pool-1-thread-1] Initializing /data/images/PROM-BASI-repl.mng: [testng] [2024-09-13 02:30:07,409] [pool-1-thread-9] Initializing /data/images/Delta-gray8.mng: [testng] [2024-09-13 02:30:07,571] [pool-1-thread-2] Initializing /data/images/png/Delta-gray-aEightB.png: [testng] [2024-09-13 02:30:07,575] [pool-1-thread-5] Initializing /data/images/png/Delta-gray-aEightW.png: [testng] [2024-09-13 02:30:07,579] [pool-1-thread-7] Initializing /data/images/buttonOne.mng: [testng] [2024-09-13 02:30:07,649] [pool-1-thread-8] Initializing /data/images/Delta-rgb-a16w.mng: [testng] [2024-09-13 02:30:07,733] [pool-1-thread-4] Initializing /data/images/png/Delta-gray-a16w.png: [testng] [2024-09-13 02:30:07,905] [pool-1-thread-5] Initializing /data/images/MNGTERM3-5.mng: [testng] [2024-09-13 02:30:07,948] [pool-1-thread-12] Initializing /data/images/Delta-gray-a16w.mng: [testng] [2024-09-13 02:30:07,998] [pool-1-thread-2] Initializing /data/images/MNGTERM3-8.mng: [testng] [2024-09-13 02:30:08,096] [pool-1-thread-9] Initializing /data/images/PROM-BASN-repl.mng: [testng] [2024-09-13 02:30:08,133] [pool-1-thread-1] Initializing /data/images/png/Delta-grayEight.png: [testng] [2024-09-13 02:30:08,157] [pool-1-thread-7] Initializing /data/images/png/PROM-zfil.png: [testng] [2024-09-13 02:30:08,165] [pool-1-thread-4] Initializing /data/images/Delta-gray4.mng: [testng] [2024-09-13 02:30:08,350] [pool-1-thread-1] Initializing /data/images/MNGTERM3-2.mng: [testng] [2024-09-13 02:30:08,464] [pool-1-thread-8] Initializing /data/images/MNGPAST_eightB.mng: [testng] [2024-09-13 02:30:08,504] [pool-1-thread-7] Initializing /data/images/png/Delta-rgb16.png: [testng] [2024-09-13 02:30:08,511] [pool-1-thread-5] Initializing /data/images/PNGGxxxx.mng: [testng] [2024-09-13 02:30:08,561] [pool-1-thread-2] Initializing /data/images/PNGSxxxx.mng: [testng] [2024-09-13 02:30:08,701] [pool-1-thread-12] Initializing /data/images/MNGTERM1.mng: [testng] [2024-09-13 02:30:08,802] [pool-1-thread-7] Initializing /data/images/Delta-gray1.mng: [testng] [2024-09-13 02:30:08,852] [pool-1-thread-4] Initializing /data/images/Delta-rgb16.mng: [testng] [2024-09-13 02:30:08,997] [pool-1-thread-9] Initializing /data/images/Delta-gray-a8b.mng: [testng] [2024-09-13 02:30:09,070] [pool-1-thread-1] Initializing /data/images/png/MNGPAST16a.png: [testng] [2024-09-13 02:30:09,085] [pool-1-thread-8] Initializing /data/images/buttonTwo.mng: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 4134, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 0 seconds Finished: SUCCESS