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Started by upstream project "BIOFORMATS-test-repo" build number 191
originally caused by:
 Started by upstream project "Trigger" build number 213
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins12657165196657624636.sh
+ '[' minc = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_30228_merge_ci -v /uod/idr/repos/curated/minc:/data -v /uod/idr-scratch/merge-ci/curated/minc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 01:51:09,432 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:51:09,434 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
   [testng] 01:51:09,434 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:51:09,436 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:51:09,436 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:51:09,436 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:51:09,437 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:51:09,437 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:51:09,437 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:51:09,438 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:51:09,438 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:51:09,439 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:51:09,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:51:09,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:51:09,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:51:09,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:51:09,671 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:51:09,671 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:51:09,671 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:51:09,671 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:51:09,671 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
   [testng] 01:51:09,672 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
   [testng] 01:51:09,672 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 235 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-09-17 01:51:09,683] [main] java.version = 11.0.16
   [testng] 01:51:09,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:51:09,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:51:09,736 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-17_01-51-09.log]
   [testng] 01:51:09,739 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-09-17 01:51:09,742] [main] testng.directory = /data
   [testng] [2024-09-17 01:51:09,742] [main] testng.configDirectory = /config
   [testng] [2024-09-17 01:51:09,754] [main] testng.multiplier = 1.0
   [testng] [2024-09-17 01:51:09,756] [main] testng.in-memory = false
   [testng] [2024-09-17 01:51:09,756] [main] testng.allow-missing = false
   [testng] [2024-09-17 01:51:09,756] [main] user.language = en
   [testng] [2024-09-17 01:51:09,756] [main] user.country = ${user.country}
   [testng] [2024-09-17 01:51:09,756] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-09-17 01:51:10,936] [main] ----------------------------------------
   [testng] [2024-09-17 01:51:10,937] [main] Total files: 15
   [testng] [2024-09-17 01:51:10,937] [main] Scan time: 1.18 s (78 ms/file)
   [testng] [2024-09-17 01:51:10,937] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-09-17 01:51:20,956] [pool-1-thread-1] Initializing /data/samples/ICBM/icbm_template_2.00mm.mnc: 
   [testng] 01:51:20,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:51:20,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:51:20,960 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-17_01-51-20.log]
   [testng] 01:51:20,960 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57f02621 - End of configuration.
   [testng] [2024-09-17 01:51:21,002] [pool-1-thread-12] Initializing /data/samples/ICBM/icbm_template_3.00mm.mnc: 
   [testng] 01:51:21,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:51:21,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:51:21,004 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-17_01-51-21.log]
   [testng] 01:51:21,004 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34ef30fb - End of configuration.
   [testng] [2024-09-17 01:51:21,036] [pool-1-thread-11] Initializing /data/qa-17215/IBSR01.mnc: 
   [testng] 01:51:21,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:51:21,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:51:21,037 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-17_01-51-21.log]
   [testng] 01:51:21,038 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4511b9f2 - End of configuration.
   [testng] [2024-09-17 01:51:21,197] [pool-1-thread-10] Initializing /data/daren/test_32bit_float.mnc: 
   [testng] 01:51:21,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:51:21,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:51:21,198 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-17_01-51-21.log]
   [testng] 01:51:21,199 |-INFO in ch.qos.logback.core.sift.SiftProcessor@460e19ce - End of configuration.
   [testng] [2024-09-17 01:51:21,520] [pool-1-thread-9] Initializing /data/samples/ICBM/icbm_template_zero.50mm.mnc: 
   [testng] 01:51:21,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:51:21,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:51:21,522 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-17_01-51-21.log]
   [testng] 01:51:21,522 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f561102 - End of configuration.
   [testng] [2024-09-17 01:51:21,702] [pool-1-thread-8] Initializing /data/samples/ICBM/icbm_template_4.00mm.mnc: 
   [testng] 01:51:21,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:51:21,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:51:21,703 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-17_01-51-21.log]
   [testng] 01:51:21,703 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5210075a - End of configuration.
   [testng] [2024-09-17 01:51:21,747] [pool-1-thread-7] Initializing /data/bigbrain/8-bit_full_400um_2009b_sym.mnc: 
   [testng] 01:51:21,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:51:21,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:51:21,748 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-17_01-51-21.log]
   [testng] 01:51:21,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61b28c26 - End of configuration.
   [testng] [2024-09-17 01:51:23,012] [pool-1-thread-6] Initializing /data/bigbrain/pm6479o.mnc: 
   [testng] 01:51:23,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:51:23,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:51:23,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-17_01-51-23.log]
   [testng] 01:51:23,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bc0ae4c - End of configuration.
   [testng] [2024-09-17 01:51:23,767] [pool-1-thread-5] Initializing /data/bigbrain/full16_400um_2009b_sym.mnc: 
   [testng] 01:51:23,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:51:23,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:51:23,769 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-17_01-51-23.log]
   [testng] 01:51:23,769 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d6d3eff - End of configuration.
   [testng] [2024-09-17 01:51:26,620] [pool-1-thread-4] Initializing /data/samples/N3/average_305_mask_1mm.mnc: 
   [testng] 01:51:26,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:51:26,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:51:26,622 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-17_01-51-26.log]
   [testng] 01:51:26,623 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1547c4bf - End of configuration.
   [testng] [2024-09-17 01:51:26,735] [pool-1-thread-3] Initializing /data/samples/ICBM/icbm_template_zero.75mm.mnc: 
   [testng] 01:51:26,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:51:26,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:51:26,736 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-17_01-51-26.log]
   [testng] 01:51:26,737 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60804ce6 - End of configuration.
   [testng] [2024-09-17 01:51:26,837] [pool-1-thread-2] Initializing /data/samples/ICBM/icbm_template_6.00mm.mnc: 
   [testng] 01:51:26,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:51:26,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:51:26,838 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-17_01-51-26.log]
   [testng] 01:51:26,839 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63db178a - End of configuration.

BUILD SUCCESSFUL
Total time: 41 seconds
Finished: SUCCESS