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Started by upstream project "BIOFORMATS-test-repo" build number 24 originally caused by: Started by upstream project "Trigger" build number 27 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins9385195560303495835.sh + '[' cellomics = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_3028_merge_ci -v /uod/idr/repos/curated/cellomics:/data -v /uod/idr-scratch/merge-ci/curated/cellomics:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 11:50:43,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 11:50:43,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 11:50:43,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 11:50:43,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 11:50:43,783 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 11:50:43,783 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 11:50:43,783 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 11:50:43,784 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 11:50:43,784 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 11:50:43,785 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 11:50:43,785 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 426 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-05 11:50:43,799] [main] java.version = 1.8.0_342 [testng] 11:50:43,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:50:43,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:50:43,861 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-05_11-50-43.log] [testng] 11:50:43,863 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-05 11:50:43,867] [main] testng.directory = /data [testng] [2024-04-05 11:50:43,867] [main] testng.configDirectory = /config [testng] [2024-04-05 11:50:43,883] [main] testng.multiplier = 1.0 [testng] [2024-04-05 11:50:43,883] [main] testng.in-memory = false [testng] [2024-04-05 11:50:43,883] [main] testng.allow-missing = false [testng] [2024-04-05 11:50:43,884] [main] user.language = en [testng] [2024-04-05 11:50:43,884] [main] user.country = ${user.country} [testng] [2024-04-05 11:50:43,884] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-05 11:50:56,095] [main] ---------------------------------------- [testng] [2024-04-05 11:50:56,096] [main] Total files: 2539 [testng] [2024-04-05 11:50:56,096] [main] Scan time: 12.211 s (4 ms/file) [testng] [2024-04-05 11:50:56,096] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 17 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-05 11:50:58,376] [pool-1-thread-1] Initializing /data/samples/different-field-count/plate_B03f00d0.C01: [testng] 11:50:58,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 11:50:58,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:50:58,378 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-05_11-50-58.log] [testng] 11:50:58,378 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45959522 - End of configuration. [testng] [2024-04-05 11:50:58,424] [pool-1-thread-12] Initializing /data/omar/FB03f00d0.C01: [testng] 11:50:58,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:50:58,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:50:58,425 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-05_11-50-58.log] [testng] 11:50:58,426 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19cfe76e - End of configuration. [testng] [2024-04-05 11:50:58,460] [pool-1-thread-11] Initializing /data/samples/plate-size/plate_B03f00d0.C01: [testng] 11:50:58,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:50:58,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:50:58,461 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-05_11-50-58.log] [testng] 11:50:58,462 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30332cfa - End of configuration. [testng] [2024-04-05 11:50:58,495] [pool-1-thread-10] Initializing /data/lee/icd002235_090127090001_a01f00d1.c01: [testng] 11:50:58,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 11:50:58,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:50:58,496 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-05_11-50-58.log] [testng] 11:50:58,497 |-INFO in ch.qos.logback.core.sift.SiftProcessor@768e6c88 - End of configuration. [testng] [2024-04-05 11:50:58,515] [pool-1-thread-9] Initializing /data/johannes/MFGTMP_081128200001_A02f239d1.C01: [testng] 11:50:58,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 11:50:58,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:50:58,516 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-05_11-50-58.log] [testng] 11:50:58,517 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38b0025c - End of configuration. [testng] [2024-04-05 11:50:58,553] [pool-1-thread-8] Initializing /data/qa-7352/test/MFGTMP-PC_130509120002_B02f00d0.C01: [testng] 11:50:58,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 11:50:58,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:50:58,554 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-05_11-50-58.log] [testng] 11:50:58,554 |-INFO in ch.qos.logback.core.sift.SiftProcessor@190f972e - End of configuration. [testng] [2024-04-05 11:50:58,725] [pool-1-thread-7] Initializing /data/johannes/MFGTMP_081222130005_E07f00d0.C01: [testng] 11:50:58,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 11:50:58,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:50:58,726 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-05_11-50-58.log] [testng] 11:50:58,726 |-INFO in ch.qos.logback.core.sift.SiftProcessor@574f3462 - End of configuration. [testng] [2024-04-05 11:50:58,740] [pool-1-thread-6] Initializing /data/lee/AS_09125_050116030001_D03f00d0.DIB: [testng] 11:50:58,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 11:50:58,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:50:58,741 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-05_11-50-58.log] [testng] 11:50:58,741 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37aabff3 - End of configuration. [testng] [2024-04-05 11:50:58,755] [pool-1-thread-5] Initializing /data/qa-7352/test/MFGTMP-PC_130509120002_B02f00o1.C01: [testng] 11:50:58,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 11:50:58,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:50:58,756 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-05_11-50-58.log] [testng] 11:50:58,756 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c316226 - End of configuration. [testng] [2024-04-05 11:50:58,849] [pool-1-thread-4] Initializing /data/omar/FB03f00o1.C01: [testng] 11:50:58,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:50:58,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:50:58,849 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-05_11-50-58.log] [testng] 11:50:58,850 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67d3010e - End of configuration. [testng] [2024-04-05 11:50:58,864] [pool-1-thread-3] Initializing /data/qa-21720/AS_09125_050117190001_A14f00d0.DIB: [testng] 11:50:58,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 11:50:58,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:50:58,865 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-05_11-50-58.log] [testng] 11:50:58,865 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10d6ae28 - End of configuration. [testng] [2024-04-05 11:50:58,875] [pool-1-thread-2] Initializing /data/omar/FB03f03o2.DIB: [testng] 11:50:58,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 11:50:58,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:50:58,876 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-05_11-50-58.log] [testng] 11:50:58,876 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47260f61 - End of configuration. [testng] [2024-04-05 11:51:00,570] [pool-1-thread-6] Initializing /data/omar/FB03f00o2.C01: [testng] [2024-04-05 11:51:00,588] [pool-1-thread-4] Initializing /data/public/BBBC001/AS_09125_050118150001_A03f00d0.DIB: [testng] [2024-04-05 11:51:00,602] [pool-1-thread-2] Initializing /data/samples/sparse-plate/plate_E03f00d0.C01: [testng] [2024-04-05 11:51:00,636] [pool-1-thread-9] Initializing /data/harri/MFGTMP-PC_111018140003/MFGTMP-PC_111018140003_E04f00d0.C01: [testng] [2024-04-05 11:51:00,730] [pool-1-thread-12] Initializing /data/omar/FB03f00d1.C01: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 901, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 47 seconds Finished: SUCCESS