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Started by upstream project "BIOFORMATS-test-repo" build number 192 originally caused by: Started by upstream project "Trigger" build number 214 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins3808190483646743622.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_30321_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:22:02,034 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:22:02,035 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 01:22:02,035 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:02,036 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:02,037 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:22:02,037 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:22:02,037 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:22:02,037 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:02,038 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:02,038 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:22:02,038 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:22:02,039 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:22:02,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:22:02,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:22:02,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:22:02,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:22:02,217 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:22:02,217 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:22:02,217 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:22:02,218 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:22:02,218 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 01:22:02,218 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 01:22:02,218 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 180 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-18 01:22:02,227] [main] java.version = 17.0.2 [testng] 01:22:02,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:22:02,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:02,270 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-18_01-22-02.log] [testng] 01:22:02,271 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-09-18 01:22:02,273] [main] testng.directory = /data [testng] [2024-09-18 01:22:02,273] [main] testng.configDirectory = /config [testng] [2024-09-18 01:22:02,289] [main] testng.multiplier = 1.0 [testng] [2024-09-18 01:22:02,289] [main] testng.in-memory = false [testng] [2024-09-18 01:22:02,290] [main] testng.allow-missing = false [testng] [2024-09-18 01:22:02,290] [main] user.language = en [testng] [2024-09-18 01:22:02,290] [main] user.country = ${user.country} [testng] [2024-09-18 01:22:02,290] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-18 01:22:03,209] [main] ---------------------------------------- [testng] [2024-09-18 01:22:03,209] [main] Total files: 36 [testng] [2024-09-18 01:22:03,209] [main] Scan time: 0.919 s (25 ms/file) [testng] [2024-09-18 01:22:03,209] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-18 01:22:04,550] [pool-1-thread-1] Initializing /data/generated/mri-stack17.pcx: [testng] 01:22:04,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:22:04,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:04,554 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-18_01-22-04.log] [testng] 01:22:04,554 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71b177b6 - End of configuration. [testng] [2024-09-18 01:22:04,610] [pool-1-thread-12] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] 01:22:04,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:22:04,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:04,612 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-18_01-22-04.log] [testng] 01:22:04,612 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48757499 - End of configuration. [testng] [2024-09-18 01:22:04,627] [pool-1-thread-11] Initializing /data/generated/mri-stack16.pcx: [testng] 01:22:04,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:22:04,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:04,628 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-18_01-22-04.log] [testng] 01:22:04,629 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dd7dd74 - End of configuration. [testng] [2024-09-18 01:22:04,640] [pool-1-thread-10] Initializing /data/generated/mri-stack0.pcx: [testng] 01:22:04,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:22:04,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:04,640 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-18_01-22-04.log] [testng] 01:22:04,641 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d938d13 - End of configuration. [testng] [2024-09-18 01:22:04,649] [pool-1-thread-9] Initializing /data/generated/mri-stack12.pcx: [testng] 01:22:04,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:22:04,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:04,651 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-18_01-22-04.log] [testng] 01:22:04,651 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a53f342 - End of configuration. [testng] [2024-09-18 01:22:04,660] [pool-1-thread-8] Initializing /data/generated/mri-stack26.pcx: [testng] 01:22:04,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:22:04,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:04,661 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-18_01-22-04.log] [testng] 01:22:04,661 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e354906 - End of configuration. [testng] [2024-09-18 01:22:04,667] [pool-1-thread-7] Initializing /data/generated/mri-stack21.pcx: [testng] 01:22:04,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:22:04,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:04,668 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-18_01-22-04.log] [testng] 01:22:04,668 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d178726 - End of configuration. [testng] [2024-09-18 01:22:04,674] [pool-1-thread-6] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] 01:22:04,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:22:04,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:04,675 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-18_01-22-04.log] [testng] 01:22:04,675 |-INFO in ch.qos.logback.core.sift.SiftProcessor@163b808a - End of configuration. [testng] [2024-09-18 01:22:04,684] [pool-1-thread-5] Initializing /data/generated/mri-stack25.pcx: [testng] 01:22:04,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:22:04,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:04,685 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-18_01-22-04.log] [testng] 01:22:04,686 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59bfa464 - End of configuration. [testng] [2024-09-18 01:22:04,691] [pool-1-thread-4] Initializing /data/generated/mri-stack3.pcx: [testng] 01:22:04,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:22:04,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:04,692 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-18_01-22-04.log] [testng] 01:22:04,692 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a9d771a - End of configuration. [testng] [2024-09-18 01:22:04,699] [pool-1-thread-3] Initializing /data/generated/mri-stack5.pcx: [testng] 01:22:04,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:22:04,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:04,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-18_01-22-04.log] [testng] 01:22:04,701 |-INFO in ch.qos.logback.core.sift.SiftProcessor@196433ac - End of configuration. [testng] [2024-09-18 01:22:04,707] [pool-1-thread-2] Initializing /data/generated/mri-stack15.pcx: [testng] 01:22:04,707 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:22:04,707 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:04,707 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-18_01-22-04.log] [testng] 01:22:04,708 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7dc69d2c - End of configuration. [testng] [2024-09-18 01:22:06,785] [pool-1-thread-1] Initializing /data/generated/mri-stack8.pcx: [testng] [2024-09-18 01:22:06,793] [pool-1-thread-8] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2024-09-18 01:22:06,801] [pool-1-thread-3] Initializing /data/generated/mri-stack6.pcx: [testng] [2024-09-18 01:22:06,811] [pool-1-thread-5] Initializing /data/generated/mri-stack22.pcx: [testng] [2024-09-18 01:22:06,817] [pool-1-thread-10] Initializing /data/generated/mri-stack2.pcx: [testng] [2024-09-18 01:22:06,822] [pool-1-thread-2] Initializing /data/generated/mri-stack19.pcx: [testng] [2024-09-18 01:22:06,829] [pool-1-thread-11] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2024-09-18 01:22:06,837] [pool-1-thread-4] Initializing /data/generated/mri-stack10.pcx: [testng] [2024-09-18 01:22:06,843] [pool-1-thread-7] Initializing /data/generated/mri-stack9.pcx: [testng] [2024-09-18 01:22:06,848] [pool-1-thread-9] Initializing /data/generated/mri-stack11.pcx: [testng] [2024-09-18 01:22:06,853] [pool-1-thread-6] Initializing /data/generated/mri-stack18.pcx: [testng] [2024-09-18 01:22:06,858] [pool-1-thread-12] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2024-09-18 01:22:07,096] [pool-1-thread-10] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] [2024-09-18 01:22:07,103] [pool-1-thread-9] Initializing /data/generated/mri-stack1.pcx: [testng] [2024-09-18 01:22:07,108] [pool-1-thread-3] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [2024-09-18 01:22:07,138] [pool-1-thread-1] Initializing /data/generated/mri-stack23.pcx: [testng] [2024-09-18 01:22:07,145] [pool-1-thread-6] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] [2024-09-18 01:22:07,153] [pool-1-thread-7] Initializing /data/generated/mri-stack4.pcx: [testng] [2024-09-18 01:22:07,201] [pool-1-thread-2] Initializing /data/generated/mri-stack24.pcx: [testng] [2024-09-18 01:22:07,205] [pool-1-thread-4] Initializing /data/generated/mri-stack13.pcx: [testng] [2024-09-18 01:22:07,210] [pool-1-thread-5] Initializing /data/generated/mri-stack20.pcx: [testng] [2024-09-18 01:22:07,413] [pool-1-thread-9] Initializing /data/generated/mri-stack14.pcx: [testng] [2024-09-18 01:22:07,465] [pool-1-thread-7] Initializing /data/generated/mri-stack7.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 10 seconds Finished: SUCCESS