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Started by upstream project "BIOFORMATS-test-repo" build number 193 originally caused by: Started by upstream project "Trigger" build number 215 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins11006096389909047783.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_30485_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:21:29,067 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:21:29,068 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 01:21:29,068 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:29,069 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:29,069 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:21:29,069 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:21:29,070 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:21:29,070 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:29,070 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:29,071 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:21:29,071 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:21:29,071 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:21:29,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:21:29,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:21:29,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:21:29,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:21:29,249 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:21:29,249 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:21:29,249 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:21:29,250 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:21:29,250 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 01:21:29,250 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 01:21:29,250 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 180 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-19 01:21:29,259] [main] java.version = 21 [testng] 01:21:29,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:21:29,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:29,300 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-19_01-21-29.log] [testng] 01:21:29,301 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-09-19 01:21:29,302] [main] testng.directory = /data [testng] [2024-09-19 01:21:29,302] [main] testng.configDirectory = /config [testng] [2024-09-19 01:21:29,310] [main] testng.multiplier = 1.0 [testng] [2024-09-19 01:21:29,311] [main] testng.in-memory = false [testng] [2024-09-19 01:21:29,311] [main] testng.allow-missing = false [testng] [2024-09-19 01:21:29,311] [main] user.language = en [testng] [2024-09-19 01:21:29,311] [main] user.country = ${user.country} [testng] [2024-09-19 01:21:29,311] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-19 01:21:29,965] [main] ---------------------------------------- [testng] [2024-09-19 01:21:29,965] [main] Total files: 36 [testng] [2024-09-19 01:21:29,965] [main] Scan time: 0.654 s (18 ms/file) [testng] [2024-09-19 01:21:29,966] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-19 01:21:31,236] [pool-1-thread-1] Initializing /data/generated/mri-stack1.pcx: [testng] 01:21:31,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:21:31,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:31,238 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-19_01-21-31.log] [testng] 01:21:31,239 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dd2c742 - End of configuration. [testng] [2024-09-19 01:21:31,254] [pool-1-thread-12] Initializing /data/generated/mri-stack9.pcx: [testng] 01:21:31,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:21:31,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:31,255 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-19_01-21-31.log] [testng] 01:21:31,256 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dd9a693 - End of configuration. [testng] [2024-09-19 01:21:31,262] [pool-1-thread-11] Initializing /data/generated/mri-stack15.pcx: [testng] 01:21:31,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:21:31,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:31,263 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-19_01-21-31.log] [testng] 01:21:31,263 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29c3a9dd - End of configuration. [testng] [2024-09-19 01:21:31,278] [pool-1-thread-10] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] 01:21:31,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:21:31,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:31,279 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-19_01-21-31.log] [testng] 01:21:31,280 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5de88823 - End of configuration. [testng] [2024-09-19 01:21:31,292] [pool-1-thread-9] Initializing /data/generated/mri-stack10.pcx: [testng] 01:21:31,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:21:31,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:31,294 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-19_01-21-31.log] [testng] 01:21:31,294 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29f01419 - End of configuration. [testng] [2024-09-19 01:21:31,303] [pool-1-thread-8] Initializing /data/generated/mri-stack13.pcx: [testng] 01:21:31,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:21:31,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:31,304 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-19_01-21-31.log] [testng] 01:21:31,304 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20eb8257 - End of configuration. [testng] [2024-09-19 01:21:31,313] [pool-1-thread-7] Initializing /data/generated/mri-stack4.pcx: [testng] 01:21:31,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:21:31,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:31,313 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-19_01-21-31.log] [testng] 01:21:31,314 |-INFO in ch.qos.logback.core.sift.SiftProcessor@999d128 - End of configuration. [testng] [2024-09-19 01:21:31,322] [pool-1-thread-6] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] 01:21:31,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:21:31,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:31,323 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-19_01-21-31.log] [testng] 01:21:31,323 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b97b877 - End of configuration. [testng] [2024-09-19 01:21:31,335] [pool-1-thread-5] Initializing /data/generated/mri-stack21.pcx: [testng] 01:21:31,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:21:31,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:31,335 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-19_01-21-31.log] [testng] 01:21:31,336 |-INFO in ch.qos.logback.core.sift.SiftProcessor@498679da - End of configuration. [testng] [2024-09-19 01:21:31,346] [pool-1-thread-4] Initializing /data/generated/mri-stack6.pcx: [testng] 01:21:31,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:21:31,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:31,347 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-19_01-21-31.log] [testng] 01:21:31,348 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42bcb890 - End of configuration. [testng] [2024-09-19 01:21:31,354] [pool-1-thread-3] Initializing /data/generated/mri-stack23.pcx: [testng] 01:21:31,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:21:31,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:31,355 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-19_01-21-31.log] [testng] 01:21:31,356 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b77fe1a - End of configuration. [testng] [2024-09-19 01:21:31,364] [pool-1-thread-2] Initializing /data/generated/mri-stack14.pcx: [testng] 01:21:31,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:21:31,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:31,366 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-19_01-21-31.log] [testng] 01:21:31,366 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e464c - End of configuration. [testng] [2024-09-19 01:21:34,541] [pool-1-thread-7] Initializing /data/generated/mri-stack16.pcx: [testng] [2024-09-19 01:21:34,548] [pool-1-thread-9] Initializing /data/generated/mri-stack7.pcx: [testng] [2024-09-19 01:21:34,560] [pool-1-thread-1] Initializing /data/generated/mri-stack19.pcx: [testng] [2024-09-19 01:21:34,571] [pool-1-thread-3] Initializing /data/generated/mri-stack2.pcx: [testng] [2024-09-19 01:21:34,580] [pool-1-thread-4] Initializing /data/generated/mri-stack11.pcx: [testng] [2024-09-19 01:21:34,585] [pool-1-thread-5] Initializing /data/generated/mri-stack26.pcx: [testng] [2024-09-19 01:21:34,599] [pool-1-thread-11] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] [2024-09-19 01:21:34,617] [pool-1-thread-8] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] [2024-09-19 01:21:34,629] [pool-1-thread-2] Initializing /data/generated/mri-stack25.pcx: [testng] [2024-09-19 01:21:34,640] [pool-1-thread-12] Initializing /data/generated/mri-stack18.pcx: [testng] [2024-09-19 01:21:34,660] [pool-1-thread-10] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] [2024-09-19 01:21:34,671] [pool-1-thread-6] Initializing /data/generated/mri-stack8.pcx: [testng] [2024-09-19 01:21:34,980] [pool-1-thread-6] Initializing /data/generated/mri-stack3.pcx: [testng] [2024-09-19 01:21:34,988] [pool-1-thread-9] Initializing /data/generated/mri-stack12.pcx: [testng] [2024-09-19 01:21:35,030] [pool-1-thread-1] Initializing /data/generated/mri-stack24.pcx: [testng] [2024-09-19 01:21:35,039] [pool-1-thread-5] Initializing /data/generated/mri-stack20.pcx: [testng] [2024-09-19 01:21:35,045] [pool-1-thread-2] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2024-09-19 01:21:35,059] [pool-1-thread-12] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [2024-09-19 01:21:35,098] [pool-1-thread-4] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] [2024-09-19 01:21:35,114] [pool-1-thread-7] Initializing /data/generated/mri-stack0.pcx: [testng] [2024-09-19 01:21:35,120] [pool-1-thread-3] Initializing /data/generated/mri-stack5.pcx: [testng] [2024-09-19 01:21:35,217] [pool-1-thread-6] Initializing /data/generated/mri-stack17.pcx: [testng] [2024-09-19 01:21:35,283] [pool-1-thread-9] Initializing /data/generated/mri-stack22.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 seconds Finished: SUCCESS