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Started by upstream project "BIOFORMATS-test-repo" build number 194 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins4775851784783037387.sh + '[' apng = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_30775_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 14:07:21,926 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 14:07:21,927 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 14:07:21,927 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 14:07:21,928 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 14:07:21,929 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 14:07:21,929 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 14:07:21,929 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 14:07:21,929 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 14:07:21,930 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 14:07:21,930 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 14:07:21,930 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 14:07:21,931 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 14:07:22,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 14:07:22,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 14:07:22,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 14:07:22,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 14:07:22,112 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 14:07:22,113 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 14:07:22,113 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 14:07:22,113 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 14:07:22,114 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 14:07:22,114 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 14:07:22,114 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 184 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-19 14:07:22,123] [main] java.version = 21 [testng] 14:07:22,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 14:07:22,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:07:22,165 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-19_14-07-22.log] [testng] 14:07:22,167 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-09-19 14:07:22,168] [main] testng.directory = /data [testng] [2024-09-19 14:07:22,168] [main] testng.configDirectory = /config [testng] [2024-09-19 14:07:22,176] [main] testng.multiplier = 1.0 [testng] [2024-09-19 14:07:22,177] [main] testng.in-memory = false [testng] [2024-09-19 14:07:22,177] [main] testng.allow-missing = false [testng] [2024-09-19 14:07:22,177] [main] user.language = en [testng] [2024-09-19 14:07:22,177] [main] user.country = ${user.country} [testng] [2024-09-19 14:07:22,177] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-19 14:07:22,747] [main] ---------------------------------------- [testng] [2024-09-19 14:07:22,747] [main] Total files: 21 [testng] [2024-09-19 14:07:22,747] [main] Scan time: 0.57 s (27 ms/file) [testng] [2024-09-19 14:07:22,748] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-19 14:07:24,703] [pool-1-thread-1] Initializing /data/samples/joanna_viera01.png: [testng] 14:07:24,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 14:07:24,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:07:24,704 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-19_14-07-24.log] [testng] 14:07:24,705 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d4777fb - End of configuration. [testng] [2024-09-19 14:07:24,731] [pool-1-thread-12] Initializing /data/samples/Sun.png: [testng] 14:07:24,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 14:07:24,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:07:24,733 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-19_14-07-24.log] [testng] 14:07:24,733 |-INFO in ch.qos.logback.core.sift.SiftProcessor@177d9b0d - End of configuration. [testng] [2024-09-19 14:07:24,756] [pool-1-thread-11] Initializing /data/samples/Matrix.png: [testng] 14:07:24,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 14:07:24,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:07:24,757 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-19_14-07-24.log] [testng] 14:07:24,758 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12e0fead - End of configuration. [testng] [2024-09-19 14:07:24,774] [pool-1-thread-10] Initializing /data/samples/william_wong05.png: [testng] 14:07:24,774 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 14:07:24,774 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:07:24,775 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-19_14-07-24.log] [testng] 14:07:24,775 |-INFO in ch.qos.logback.core.sift.SiftProcessor@570ecaa - End of configuration. [testng] [2024-09-19 14:07:24,792] [pool-1-thread-9] Initializing /data/samples/william_wong02.png: [testng] 14:07:24,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 14:07:24,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:07:24,793 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-19_14-07-24.log] [testng] 14:07:24,793 |-INFO in ch.qos.logback.core.sift.SiftProcessor@292262e3 - End of configuration. [testng] [2024-09-19 14:07:24,815] [pool-1-thread-8] Initializing /data/samples/daniel_coltri_two.png: [testng] 14:07:24,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 14:07:24,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:07:24,816 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-19_14-07-24.log] [testng] 14:07:24,816 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ca2bb95 - End of configuration. [testng] [2024-09-19 14:07:24,829] [pool-1-thread-7] Initializing /data/samples/StarV838.png: [testng] 14:07:24,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 14:07:24,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:07:24,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-19_14-07-24.log] [testng] 14:07:24,831 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5aab4b6 - End of configuration. [testng] [2024-09-19 14:07:24,846] [pool-1-thread-6] Initializing /data/samples/PhugAnimation3.png: [testng] 14:07:24,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 14:07:24,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:07:24,847 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-19_14-07-24.log] [testng] 14:07:24,848 |-INFO in ch.qos.logback.core.sift.SiftProcessor@167b6194 - End of configuration. [testng] [2024-09-19 14:07:24,870] [pool-1-thread-5] Initializing /data/samples/daniel_coltri_one.png: [testng] 14:07:24,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 14:07:24,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:07:24,871 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-19_14-07-24.log] [testng] 14:07:24,871 |-INFO in ch.qos.logback.core.sift.SiftProcessor@529ddb8d - End of configuration. [testng] [2024-09-19 14:07:24,889] [pool-1-thread-4] Initializing /data/qa-7473/n.tif: [testng] 14:07:24,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 14:07:24,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:07:24,891 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-19_14-07-24.log] [testng] 14:07:24,891 |-INFO in ch.qos.logback.core.sift.SiftProcessor@143761f9 - End of configuration. [testng] [2024-09-19 14:07:25,429] [pool-1-thread-3] Initializing /data/samples/atom.png: [testng] 14:07:25,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 14:07:25,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:07:25,430 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-19_14-07-25.log] [testng] 14:07:25,431 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dff74a6 - End of configuration. [testng] [2024-09-19 14:07:25,446] [pool-1-thread-2] Initializing /data/samples/MoonPhases.png: [testng] 14:07:25,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 14:07:25,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:07:25,447 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-19_14-07-25.log] [testng] 14:07:25,447 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23dedc0 - End of configuration. [testng] [2024-09-19 14:07:27,245] [pool-1-thread-1] Initializing /data/samples/william_wong01.png: [testng] [2024-09-19 14:07:27,268] [pool-1-thread-10] Initializing /data/colin/test.sfstdge.png: [testng] [2024-09-19 14:07:27,292] [pool-1-thread-8] Initializing /data/samples/spinfox.png: [testng] [2024-09-19 14:07:27,692] [pool-1-thread-12] Initializing /data/samples/william_wong04.png: [testng] [2024-09-19 14:07:27,711] [pool-1-thread-3] Initializing /data/samples/chompy2.png: [testng] [2024-09-19 14:07:27,731] [pool-1-thread-6] Initializing /data/samples/orbit.png: [testng] [2024-09-19 14:07:27,753] [pool-1-thread-11] Initializing /data/samples/phug_logo.png: [testng] [2024-09-19 14:07:27,770] [pool-1-thread-9] Initializing /data/qa-7473/x.png: [testng] [2024-09-19 14:07:27,790] [pool-1-thread-2] Initializing /data/samples/monkey_apng.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 10 seconds Finished: SUCCESS