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Started by upstream project "BIOFORMATS-test-repo" build number 194 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins15407338590981419411.sh + '[' ivision = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_30803_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 15:29:15,552 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 15:29:15,553 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 15:29:15,553 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 15:29:15,554 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 15:29:15,555 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 15:29:15,555 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 15:29:15,555 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 15:29:15,555 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 15:29:15,556 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 15:29:15,556 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 15:29:15,557 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 15:29:15,557 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 15:29:15,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 15:29:15,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 15:29:15,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 15:29:15,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 15:29:15,807 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 15:29:15,807 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 15:29:15,807 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 15:29:15,807 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 15:29:15,807 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 15:29:15,808 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 15:29:15,808 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 252 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-19 15:29:15,817] [main] java.version = 21 [testng] 15:29:15,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 15:29:15,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:29:15,860 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-19_15-29-15.log] [testng] 15:29:15,862 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-09-19 15:29:15,863] [main] testng.directory = /data [testng] [2024-09-19 15:29:15,863] [main] testng.configDirectory = /config [testng] [2024-09-19 15:29:15,872] [main] testng.multiplier = 1.0 [testng] [2024-09-19 15:29:15,872] [main] testng.in-memory = false [testng] [2024-09-19 15:29:15,872] [main] testng.allow-missing = false [testng] [2024-09-19 15:29:15,872] [main] user.language = en [testng] [2024-09-19 15:29:15,872] [main] user.country = ${user.country} [testng] [2024-09-19 15:29:15,872] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-19 15:29:19,742] [main] ---------------------------------------- [testng] [2024-09-19 15:29:19,742] [main] Total files: 17 [testng] [2024-09-19 15:29:19,742] [main] Scan time: 3.869 s (227 ms/file) [testng] [2024-09-19 15:29:19,742] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 17 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-19 15:29:23,279] [pool-1-thread-1] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm: [testng] 15:29:23,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 15:29:23,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:29:23,281 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-19_15-29-23.log] [testng] 15:29:23,282 |-INFO in ch.qos.logback.core.sift.SiftProcessor@451958d0 - End of configuration. [testng] [2024-09-19 15:29:23,481] [pool-1-thread-12] Initializing /data/jcb/200810162/mut BA no bio.ipm: [testng] 15:29:23,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 15:29:23,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:29:23,483 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-19_15-29-23.log] [testng] 15:29:23,483 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26146bf5 - End of configuration. [testng] [2024-09-19 15:29:23,661] [pool-1-thread-11] Initializing /data/samples/48bit 150x100x3.ipm: [testng] 15:29:23,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 15:29:23,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:29:23,662 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-19_15-29-23.log] [testng] 15:29:23,662 |-INFO in ch.qos.logback.core.sift.SiftProcessor@590fa094 - End of configuration. [testng] [2024-09-19 15:29:23,817] [pool-1-thread-10] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center: [testng] 15:29:23,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 15:29:23,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:29:23,818 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-19_15-29-23.log] [testng] 15:29:23,818 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a398a4d - End of configuration. [testng] [2024-09-19 15:29:23,990] [pool-1-thread-9] Initializing /data/nigel/CD48_75_24hrColor.ipm: [testng] 15:29:23,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 15:29:23,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:29:23,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-19_15-29-23.log] [testng] 15:29:23,993 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a18b1fe - End of configuration. [testng] [2024-09-19 15:29:24,175] [pool-1-thread-8] Initializing /data/samples/16bit 320x256x1.ipm: [testng] 15:29:24,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 15:29:24,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:29:24,176 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-19_15-29-24.log] [testng] 15:29:24,177 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46cfed4 - End of configuration. [testng] [2024-09-19 15:29:24,367] [pool-1-thread-7] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm: [testng] 15:29:24,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 15:29:24,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:29:24,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-19_15-29-24.log] [testng] 15:29:24,368 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dbaf66d - End of configuration. [testng] [2024-09-19 15:29:24,542] [pool-1-thread-6] Initializing /data/christopher/Color48 Copy.ipm: [testng] 15:29:24,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 15:29:24,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:29:24,543 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-19_15-29-24.log] [testng] 15:29:24,544 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4da6a97b - End of configuration. [testng] [2024-09-19 15:29:24,704] [pool-1-thread-5] Initializing /data/samples/08Bit 320x256x1.ipm: [testng] 15:29:24,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 15:29:24,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:29:24,705 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-19_15-29-24.log] [testng] 15:29:24,706 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23e37d1d - End of configuration. [testng] [2024-09-19 15:29:24,890] [pool-1-thread-4] Initializing /data/jcb/200810162/mutBA plus bio.ipm: [testng] 15:29:24,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 15:29:24,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:29:24,891 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-19_15-29-24.log] [testng] 15:29:24,891 |-INFO in ch.qos.logback.core.sift.SiftProcessor@680d6be2 - End of configuration. [testng] [2024-09-19 15:29:25,054] [pool-1-thread-3] Initializing /data/samples/16-bit 320x256x3.ipm: [testng] 15:29:25,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 15:29:25,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:29:25,055 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-19_15-29-25.log] [testng] 15:29:25,055 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9dae383 - End of configuration. [testng] [2024-09-19 15:29:25,213] [pool-1-thread-2] Initializing /data/jcb/200810162/wt ba no bio.ipm: [testng] 15:29:25,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 15:29:25,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:29:25,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-19_15-29-25.log] [testng] 15:29:25,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f796609 - End of configuration. [testng] [2024-09-19 15:29:28,716] [pool-1-thread-11] Initializing /data/samples/24bit 300x200x3.ipm: [testng] [2024-09-19 15:29:28,866] [pool-1-thread-8] Initializing /data/jcb/200810162/wt BA plus bio.ipm: [testng] [2024-09-19 15:29:29,015] [pool-1-thread-5] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm: [testng] [2024-09-19 15:29:29,178] [pool-1-thread-3] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm: [testng] [2024-09-19 15:29:29,337] [pool-1-thread-1] Initializing /data/samples/08Bit 320x256xthree.ipm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 901, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 20 seconds Finished: SUCCESS