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Started by upstream project "BIOFORMATS-test-repo" build number 195 originally caused by: Started by upstream project "Trigger" build number 217 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins16134229007300481941.sh + '[' fluoview = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_30911_merge_ci -v /test/idr/repos/curated/fluoview:/data -v /test/idr-scratch/merge-ci/curated/fluoview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 17:50:02,525 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 17:50:02,527 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 17:50:02,527 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 17:50:02,528 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 17:50:02,528 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 17:50:02,528 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 17:50:02,529 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 17:50:02,529 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 17:50:02,529 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 17:50:02,529 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 17:50:02,530 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 17:50:02,530 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 17:50:02,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 17:50:02,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 17:50:02,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 17:50:02,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 17:50:02,794 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 17:50:02,794 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 17:50:02,794 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 17:50:02,795 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 17:50:02,795 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 17:50:02,796 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 17:50:02,796 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 267 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-20 17:50:02,806] [main] java.version = 1.8.0_342 [testng] 17:50:02,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 17:50:02,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:50:02,854 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-20_17-50-02.log] [testng] 17:50:02,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-09-20 17:50:02,858] [main] testng.directory = /data [testng] [2024-09-20 17:50:02,858] [main] testng.configDirectory = /config [testng] [2024-09-20 17:50:02,870] [main] testng.multiplier = 1.0 [testng] [2024-09-20 17:50:02,871] [main] testng.in-memory = false [testng] [2024-09-20 17:50:02,871] [main] testng.allow-missing = false [testng] [2024-09-20 17:50:02,871] [main] user.language = en [testng] [2024-09-20 17:50:02,871] [main] user.country = ${user.country} [testng] [2024-09-20 17:50:02,871] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-09-20 17:50:04,040] [main] ---------------------------------------- [testng] [2024-09-20 17:50:04,040] [main] Total files: 14 [testng] [2024-09-20 17:50:04,041] [main] Scan time: 1.169 s (83 ms/file) [testng] [2024-09-20 17:50:04,041] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 13 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-20 17:50:09,162] [pool-1-thread-1] Initializing /data/jae/BrdU.1c-1.z.Live1-25-2005_11-58-40_AM.tif: [testng] 17:50:09,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 17:50:09,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:50:09,164 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-20_17-50-09.log] [testng] 17:50:09,164 |-INFO in ch.qos.logback.core.sift.SiftProcessor@661c08db - End of configuration. [testng] [2024-09-20 17:50:09,212] [pool-1-thread-12] Initializing /data/timg/eric-three.tif: [testng] 17:50:09,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 17:50:09,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:50:09,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-20_17-50-09.log] [testng] 17:50:09,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24ffa04c - End of configuration. [testng] [2024-09-20 17:50:09,299] [pool-1-thread-11] Initializing /data/aaron/olympus_fv500.tif: [testng] 17:50:09,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 17:50:09,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:50:09,300 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-20_17-50-09.log] [testng] 17:50:09,301 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18e8cac4 - End of configuration. [testng] [2024-09-20 17:50:09,409] [pool-1-thread-10] Initializing /data/timg/eric-three-projection.tif: [testng] 17:50:09,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 17:50:09,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:50:09,411 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-20_17-50-09.log] [testng] 17:50:09,412 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3872c86c - End of configuration. [testng] [2024-09-20 17:50:09,449] [pool-1-thread-9] Initializing /data/timg/eric-one.tif: [testng] 17:50:09,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 17:50:09,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:50:09,450 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-20_17-50-09.log] [testng] 17:50:09,451 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36c2dca9 - End of configuration. [testng] [2024-09-20 17:50:09,535] [pool-1-thread-8] Initializing /data/timg/LiveOne.tif: [testng] 17:50:09,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 17:50:09,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:50:09,536 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-20_17-50-09.log] [testng] 17:50:09,536 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c5feb7 - End of configuration. [testng] [2024-09-20 17:50:09,569] [pool-1-thread-7] Initializing /data/brian/DBTRG 2X 1a-1_DSP.TIF: [testng] 17:50:09,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 17:50:09,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:50:09,570 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-20_17-50-09.log] [testng] 17:50:09,570 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7eee2591 - End of configuration. [testng] [2024-09-20 17:50:09,616] [pool-1-thread-6] Initializing /data/timg/LiveTwo.tif: [testng] 17:50:09,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 17:50:09,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:50:09,617 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-20_17-50-09.log] [testng] 17:50:09,617 |-INFO in ch.qos.logback.core.sift.SiftProcessor@754c29b3 - End of configuration. [testng] [2024-09-20 17:50:09,679] [pool-1-thread-5] Initializing /data/shalin/40xNA0.6-512x512.tif: [testng] 17:50:09,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 17:50:09,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:50:09,680 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-20_17-50-09.log] [testng] 17:50:09,680 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d2cd20d - End of configuration. [testng] [2024-09-20 17:50:09,762] [pool-1-thread-4] Initializing /data/timg/LiveThree-xyzt.tif: [testng] 17:50:09,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 17:50:09,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:50:09,763 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-20_17-50-09.log] [testng] 17:50:09,763 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40ba9993 - End of configuration. [testng] [2024-09-20 17:50:09,840] [pool-1-thread-3] Initializing /data/brian/DBTRG 2X 1a-1.tif: [testng] 17:50:09,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 17:50:09,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:50:09,841 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-20_17-50-09.log] [testng] 17:50:09,841 |-INFO in ch.qos.logback.core.sift.SiftProcessor@350b2e49 - End of configuration. [testng] [2024-09-20 17:50:09,927] [pool-1-thread-2] Initializing /data/timg/eric-one-3d.tif: [testng] 17:50:09,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 17:50:09,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:50:09,928 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-20_17-50-09.log] [testng] 17:50:09,928 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c0b9d9e - End of configuration. [testng] [2024-09-20 17:50:11,792] [pool-1-thread-8] Initializing /data/timg/E1-v2(11 som).tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 689, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 13 seconds Finished: SUCCESS