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Started by upstream project "BIOFORMATS-test-repo" build number 195 originally caused by: Started by upstream project "Trigger" build number 217 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins4316545133690478161.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_30970_merge_ci -v /test/idr/repos/curated/imagepro:/data -v /test/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 18:26:08,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 18:26:08,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 18:26:08,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 18:26:08,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 18:26:08,879 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 18:26:08,880 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 18:26:08,880 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 18:26:08,881 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 18:26:08,882 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 18:26:08,884 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 18:26:08,884 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 424 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-20 18:26:08,903] [main] java.version = 1.8.0_342 [testng] 18:26:08,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 18:26:08,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:26:08,995 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-20_18-26-08.log] [testng] 18:26:08,999 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-09-20 18:26:09,003] [main] testng.directory = /data [testng] [2024-09-20 18:26:09,003] [main] testng.configDirectory = /config [testng] [2024-09-20 18:26:09,022] [main] testng.multiplier = 1.0 [testng] [2024-09-20 18:26:09,023] [main] testng.in-memory = false [testng] [2024-09-20 18:26:09,023] [main] testng.allow-missing = false [testng] [2024-09-20 18:26:09,023] [main] user.language = en [testng] [2024-09-20 18:26:09,023] [main] user.country = ${user.country} [testng] [2024-09-20 18:26:09,023] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-09-20 18:26:10,743] [main] ---------------------------------------- [testng] [2024-09-20 18:26:10,744] [main] Total files: 22 [testng] [2024-09-20 18:26:10,744] [main] Scan time: 1.72 s (78 ms/file) [testng] [2024-09-20 18:26:10,744] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-20 18:26:18,265] [pool-1-thread-1] Initializing /data/converted/mitosis-test.seq: [testng] 18:26:18,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 18:26:18,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:26:18,266 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-20_18-26-18.log] [testng] 18:26:18,267 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a1a0d21 - End of configuration. [testng] [2024-09-20 18:26:18,334] [pool-1-thread-12] Initializing /data/alex/AFAset0003.ips: [testng] 18:26:18,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 18:26:18,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:26:18,335 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-20_18-26-18.log] [testng] 18:26:18,336 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c823ea1 - End of configuration. [testng] [2024-09-20 18:26:18,358] [pool-1-thread-11] Initializing /data/converted/clown.seq: [testng] 18:26:18,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 18:26:18,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:26:18,360 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-20_18-26-18.log] [testng] 18:26:18,361 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18cda886 - End of configuration. [testng] [2024-09-20 18:26:18,381] [pool-1-thread-10] Initializing /data/converted/dub01.pic: [testng] 18:26:18,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 18:26:18,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:26:18,383 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-20_18-26-18.log] [testng] 18:26:18,384 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e45b5d9 - End of configuration. [testng] [2024-09-20 18:26:18,450] [pool-1-thread-9] Initializing /data/converted/clown.tif: [testng] 18:26:18,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 18:26:18,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:26:18,452 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-20_18-26-18.log] [testng] 18:26:18,453 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6aabd15 - End of configuration. [testng] [2024-09-20 18:26:18,480] [pool-1-thread-8] Initializing /data/converted/clown8c.tif: [testng] 18:26:18,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 18:26:18,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:26:18,482 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-20_18-26-18.log] [testng] 18:26:18,483 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28da782d - End of configuration. [testng] [2024-09-20 18:26:18,518] [pool-1-thread-7] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 18:26:18,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 18:26:18,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:26:18,520 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-20_18-26-18.log] [testng] 18:26:18,521 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38f44746 - End of configuration. [testng] [2024-09-20 18:26:18,573] [pool-1-thread-6] Initializing /data/samples/FLDUAL.TIF: [testng] 18:26:18,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 18:26:18,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:26:18,575 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-20_18-26-18.log] [testng] 18:26:18,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cbca690 - End of configuration. [testng] [2024-09-20 18:26:18,622] [pool-1-thread-5] Initializing /data/converted/clown8c.ipw: [testng] 18:26:18,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 18:26:18,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:26:18,624 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-20_18-26-18.log] [testng] 18:26:18,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7432918f - End of configuration. [testng] [2024-09-20 18:26:18,694] [pool-1-thread-4] Initializing /data/converted/mitosis-test.ipw: [testng] 18:26:18,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 18:26:18,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:26:18,697 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-20_18-26-18.log] [testng] 18:26:18,699 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6194ae67 - End of configuration. [testng] [2024-09-20 18:26:18,753] [pool-1-thread-3] Initializing /data/samples/PROBE.TIF: [testng] 18:26:18,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 18:26:18,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:26:18,764 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-20_18-26-18.log] [testng] 18:26:18,765 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19c6ddcc - End of configuration. [testng] [2024-09-20 18:26:18,792] [pool-1-thread-2] Initializing /data/converted/clown.ipw: [testng] 18:26:18,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 18:26:18,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:26:18,793 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-20_18-26-18.log] [testng] 18:26:18,793 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a0dc298 - End of configuration. [testng] [2024-09-20 18:26:21,273] [pool-1-thread-9] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] [2024-09-20 18:26:21,390] [pool-1-thread-3] Initializing /data/xiuwen/head2.seq: [testng] [2024-09-20 18:26:21,539] [pool-1-thread-5] Initializing /data/converted/dub01.seq: [testng] [2024-09-20 18:26:21,571] [pool-1-thread-11] Initializing /data/converted/dub01.ipw: [testng] [2024-09-20 18:26:21,616] [pool-1-thread-8] Initializing /data/samples/TISSUE.TIF: [testng] [2024-09-20 18:26:21,655] [pool-1-thread-10] Initializing /data/converted/mitosis-test.tif: [testng] [2024-09-20 18:26:21,941] [pool-1-thread-4] Initializing /data/samples/HEART.SEQ: [testng] [2024-09-20 18:26:22,023] [pool-1-thread-1] Initializing /data/converted/clown8c.seq: [testng] [2024-09-20 18:26:22,051] [pool-1-thread-2] Initializing /data/converted/NESb_C2_TP7.seq: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 33 seconds Finished: SUCCESS