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Started by upstream project "BIOFORMATS-test-repo" build number 196 originally caused by: Started by upstream project "Trigger" build number 220 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins11875982629789976790.sh + '[' psd = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_31109_merge_ci -v /test/idr/repos/curated/psd:/data -v /test/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:24:51,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:24:51,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:24:51,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:24:51,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:24:51,461 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:24:51,462 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:24:51,462 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:24:51,463 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:24:51,463 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5e600dd5 - End of configuration. [testng] 02:24:51,465 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@a38c7fe - Registering current configuration as safe fallback point [testng] 02:24:51,465 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6fdbe764 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 544 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-22 02:24:51,485] [main] java.version = 17.0.2 [testng] 02:24:51,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:24:51,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:51,563 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-22_02-24-51.log] [testng] 02:24:51,566 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-09-22 02:24:51,571] [main] testng.directory = /data [testng] [2024-09-22 02:24:51,572] [main] testng.configDirectory = /config [testng] [2024-09-22 02:24:51,650] [main] testng.multiplier = 1.0 [testng] [2024-09-22 02:24:51,651] [main] testng.in-memory = false [testng] [2024-09-22 02:24:51,652] [main] testng.allow-missing = false [testng] [2024-09-22 02:24:51,652] [main] user.language = en [testng] [2024-09-22 02:24:51,652] [main] user.country = ${user.country} [testng] [2024-09-22 02:24:51,652] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-22 02:24:52,450] [main] ---------------------------------------- [testng] [2024-09-22 02:24:52,450] [main] Total files: 18 [testng] [2024-09-22 02:24:52,450] [main] Scan time: 0.798 s (44 ms/file) [testng] [2024-09-22 02:24:52,450] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-22 02:24:54,400] [pool-1-thread-1] Initializing /data/ascb/607x.psd: [testng] 02:24:54,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:24:54,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:54,402 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-22_02-24-54.log] [testng] 02:24:54,403 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dc5bbb0 - End of configuration. [testng] [2024-09-22 02:24:54,476] [pool-1-thread-12] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 02:24:54,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:24:54,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:54,478 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-22_02-24-54.log] [testng] 02:24:54,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dc8e8ad - End of configuration. [testng] [2024-09-22 02:24:54,610] [pool-1-thread-11] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 02:24:54,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:24:54,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:54,612 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-22_02-24-54.log] [testng] 02:24:54,613 |-INFO in ch.qos.logback.core.sift.SiftProcessor@638e7f7b - End of configuration. [testng] [2024-09-22 02:24:54,638] [pool-1-thread-10] Initializing /data/misc/smilie.psd: [testng] 02:24:54,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:24:54,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:54,640 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-22_02-24-54.log] [testng] 02:24:54,641 |-INFO in ch.qos.logback.core.sift.SiftProcessor@338317da - End of configuration. [testng] [2024-09-22 02:24:54,667] [pool-1-thread-9] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] 02:24:54,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:24:54,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:54,669 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-22_02-24-54.log] [testng] 02:24:54,670 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5397e18a - End of configuration. [testng] [2024-09-22 02:24:54,743] [pool-1-thread-8] Initializing /data/misc/glossy_orbs.psd: [testng] 02:24:54,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:24:54,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:54,748 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-22_02-24-54.log] [testng] 02:24:54,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7461d7e5 - End of configuration. [testng] [2024-09-22 02:24:54,775] [pool-1-thread-7] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] 02:24:54,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:24:54,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:54,777 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-22_02-24-54.log] [testng] 02:24:54,778 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56a5a589 - End of configuration. [testng] [2024-09-22 02:24:54,882] [pool-1-thread-6] Initializing /data/misc/vig_drawing_1.psd: [testng] 02:24:54,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:24:54,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:54,884 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-22_02-24-54.log] [testng] 02:24:54,885 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b4efa30 - End of configuration. [testng] [2024-09-22 02:24:54,960] [pool-1-thread-5] Initializing /data/ascb/423.psd: [testng] 02:24:54,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:24:54,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:54,964 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-22_02-24-54.log] [testng] 02:24:54,965 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a67480f - End of configuration. [testng] [2024-09-22 02:24:55,057] [pool-1-thread-4] Initializing /data/misc/venus_composite_8bit.psd: [testng] 02:24:55,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:24:55,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:55,059 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-22_02-24-55.log] [testng] 02:24:55,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c8f6f59 - End of configuration. [testng] [2024-09-22 02:24:55,162] [pool-1-thread-3] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 02:24:55,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:24:55,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:55,164 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-22_02-24-55.log] [testng] 02:24:55,165 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36451b94 - End of configuration. [testng] [2024-09-22 02:24:55,200] [pool-1-thread-2] Initializing /data/big-images/8kx8k.psd: [testng] 02:24:55,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:24:55,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:55,201 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-22_02-24-55.log] [testng] 02:24:55,201 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52cbcc5b - End of configuration. [testng] [2024-09-22 02:24:58,983] [pool-1-thread-8] Initializing /data/qa-4117/caspase gel-1.psd: [testng] [2024-09-22 02:24:59,101] [pool-1-thread-11] Initializing /data/ascb/thin&thick fill.2.psd: [testng] [2024-09-22 02:24:59,258] [pool-1-thread-10] Initializing /data/simon/colour_separated_image.psd: [testng] [2024-09-22 02:24:59,602] [pool-1-thread-12] Initializing /data/cris/house.tif: [testng] [2024-09-22 02:24:59,675] [pool-1-thread-6] Initializing /data/misc/glossy_buttons.psd: [testng] [2024-09-22 02:24:59,888] [pool-1-thread-7] Initializing /data/misc/venus_composite.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 4 seconds Finished: SUCCESS