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Started by upstream project "BIOFORMATS-test-repo" build number 197 originally caused by: Started by upstream project "Trigger" build number 221 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins9764096745332672144.sh + '[' amira = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_31164_merge_ci -v /test/idr/repos/curated/amira:/data -v /test/idr-scratch/merge-ci/curated/amira:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:49:03,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:49:03,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:49:03,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:49:03,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:49:03,684 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:49:03,685 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:49:03,685 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:49:03,686 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:49:03,686 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 01:49:03,687 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 01:49:03,687 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 619 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-23 01:49:03,705] [main] java.version = 1.8.0_342 [testng] 01:49:03,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:49:03,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:03,884 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-23_01-49-03.log] [testng] 01:49:03,887 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-09-23 01:49:03,908] [main] testng.directory = /data [testng] [2024-09-23 01:49:03,908] [main] testng.configDirectory = /config [testng] [2024-09-23 01:49:03,992] [main] testng.multiplier = 1.0 [testng] [2024-09-23 01:49:03,993] [main] testng.in-memory = false [testng] [2024-09-23 01:49:03,993] [main] testng.allow-missing = false [testng] [2024-09-23 01:49:03,993] [main] user.language = fr [testng] [2024-09-23 01:49:03,993] [main] user.country = FR [testng] [2024-09-23 01:49:03,994] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-09-23 01:49:05,175] [main] ---------------------------------------- [testng] [2024-09-23 01:49:05,175] [main] Total files: 15 [testng] [2024-09-23 01:49:05,176] [main] Scan time: 1.181 s (78 ms/file) [testng] [2024-09-23 01:49:05,176] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 12 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-23 01:49:06,865] [pool-1-thread-1] Initializing /data/jeremy/Virus_Membrane7-screenshot.PNG: [testng] 01:49:06,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:49:06,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:06,866 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-23_01-49-06.log] [testng] 01:49:06,867 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29791faf - End of configuration. [testng] [2024-09-23 01:49:06,880] [pool-1-thread-12] Initializing /data/ilya/test.am: [testng] 01:49:06,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:49:06,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:06,882 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-23_01-49-06.log] [testng] 01:49:06,882 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c27cacb - End of configuration. [testng] [2024-09-23 01:49:06,968] [pool-1-thread-11] Initializing /data/samples/emptykey/test.am: [testng] 01:49:06,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:49:06,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:06,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-23_01-49-06.log] [testng] 01:49:06,972 |-INFO in ch.qos.logback.core.sift.SiftProcessor@338d7ae0 - End of configuration. [testng] [2024-09-23 01:49:06,987] [pool-1-thread-10] Initializing /data/jeremy/Hiv_spikes.am: [testng] 01:49:06,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:49:06,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:06,988 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-23_01-49-06.log] [testng] 01:49:06,988 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13b3a33e - End of configuration. [testng] [2024-09-23 01:49:07,012] [pool-1-thread-9] Initializing /data/jcb/201108088/Haberman-Fig4A-original.am: [testng] 01:49:07,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:49:07,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:07,013 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-23_01-49-07.log] [testng] 01:49:07,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29e5139e - End of configuration. [testng] [2024-09-23 01:49:07,044] [pool-1-thread-8] Initializing /data/public/imagesc-50585/BF_CheckMIB.am: [testng] 01:49:07,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:49:07,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:07,045 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-23_01-49-07.log] [testng] 01:49:07,046 |-INFO in ch.qos.logback.core.sift.SiftProcessor@689ea080 - End of configuration. [testng] [2024-09-23 01:49:07,064] [pool-1-thread-7] Initializing /data/public/imagesc-50585/BF_Check.tif: [testng] 01:49:07,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:49:07,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:07,065 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-23_01-49-07.log] [testng] 01:49:07,065 |-INFO in ch.qos.logback.core.sift.SiftProcessor@403500aa - End of configuration. [testng] [2024-09-23 01:49:07,090] [pool-1-thread-6] Initializing /data/public/ignacio/test.am: [testng] 01:49:07,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:49:07,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:07,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-23_01-49-07.log] [testng] 01:49:07,091 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2424e7d2 - End of configuration. [testng] [2024-09-23 01:49:07,104] [pool-1-thread-5] Initializing /data/jeremy/Virus_Membrane7.am: [testng] 01:49:07,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:49:07,105 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:07,106 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-23_01-49-07.log] [testng] 01:49:07,106 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ae17bb4 - End of configuration. [testng] [2024-09-23 01:49:07,139] [pool-1-thread-4] Initializing /data/johannes/template.labels: [testng] 01:49:07,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:49:07,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:07,141 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-23_01-49-07.log] [testng] 01:49:07,141 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2314a2e0 - End of configuration. [testng] [2024-09-23 01:49:07,163] [pool-1-thread-3] Initializing /data/public/imagesc-50585/BF_CheckAmira.am: [testng] 01:49:07,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:49:07,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:07,164 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-23_01-49-07.log] [testng] 01:49:07,165 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15980e11 - End of configuration. [testng] [2024-09-23 01:49:07,179] [pool-1-thread-2] Initializing /data/johannes/template.grey: [testng] 01:49:07,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:49:07,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:07,180 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-23_01-49-07.log] [testng] 01:49:07,181 |-INFO in ch.qos.logback.core.sift.SiftProcessor@784662c5 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 636, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 13 seconds Finished: SUCCESS